Wall clock time and date at job start Tue Mar 31 2020 03:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99578 * 2 1 4 4 H 1.48505 * 109.47333 * 274.98787 * 3 2 1 5 5 H 1.48498 * 109.47096 * 34.99387 * 3 2 1 6 6 H 1.48500 * 109.46839 * 154.99106 * 3 2 1 7 7 C 1.38811 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00336 * 185.05951 * 7 2 1 9 9 N 1.36937 * 119.99808 * 5.05530 * 7 2 1 10 10 C 1.47582 * 134.49112 * 173.48168 * 9 7 2 11 11 C 1.53946 * 86.11632 * 155.36100 * 10 9 7 12 12 N 1.46502 * 113.74018 * 137.95213 * 11 10 9 13 13 C 1.34774 * 120.00185 * 156.92574 * 12 11 10 14 14 O 1.21623 * 119.99613 * 359.97438 * 13 12 11 15 15 C 1.47327 * 120.00314 * 180.02562 * 13 12 11 16 16 C 1.36684 * 126.19670 * 180.02562 * 15 13 12 17 17 N 1.34500 * 106.73279 * 179.97438 * 16 15 13 18 18 C 1.36618 * 107.93431 * 0.07366 * 17 16 15 19 19 N 1.29488 * 108.90282 * 359.90576 * 18 17 16 20 20 C 1.51102 * 122.83862 * 179.86500 * 18 17 16 21 21 O 1.43446 * 107.75710 * 345.47785 * 20 18 17 22 22 C 1.43010 * 114.08636 * 49.75183 * 21 20 18 23 23 C 1.46643 * 128.72044 * 180.13253 * 17 16 15 24 24 C 1.47813 * 134.45777 * 353.35772 * 9 7 2 25 25 H 0.97000 * 120.00337 * 359.97438 * 1 2 3 26 26 H 1.09005 * 113.76848 * 41.05862 * 10 9 7 27 27 H 1.08999 * 113.77044 * 269.66209 * 10 9 7 28 28 H 1.08993 * 113.74160 * 269.15373 * 11 10 9 29 29 H 0.97000 * 120.00058 * 336.92599 * 12 11 10 30 30 H 1.08006 * 126.63094 * 0.21562 * 16 15 13 31 31 H 1.08996 * 109.80284 * 225.90874 * 20 18 17 32 32 H 1.08997 * 109.80375 * 105.03552 * 20 18 17 33 33 H 1.08993 * 109.43147 * 169.48315 * 22 21 20 34 34 H 1.09002 * 109.39110 * 49.59893 * 22 21 20 35 35 H 1.09001 * 109.73542 * 283.24901 * 23 17 16 36 36 H 1.09003 * 109.73522 * 43.90047 * 23 17 16 37 37 H 1.08991 * 113.77235 * 90.37650 * 24 9 7 38 38 H 1.08998 * 113.83364 * 318.90935 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5042 2.6199 0.8029 6 1 3.5964 1.4121 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0872 -1.2040 0.0819 9 7 1.3297 -2.3857 -0.1056 10 6 1.7288 -3.7983 -0.2581 11 6 0.3712 -4.1420 0.3812 12 7 -0.3173 -5.2632 -0.2632 13 6 -1.2386 -5.9707 0.4201 14 8 -1.4982 -5.6787 1.5719 15 6 -1.9305 -7.0986 -0.2277 16 6 -2.8816 -7.8974 0.3430 17 7 -3.2452 -8.7944 -0.5909 18 6 -2.5189 -8.5434 -1.7205 19 7 -1.7385 -7.5336 -1.5018 20 6 -2.6604 -9.3602 -2.9839 21 8 -3.3731 -10.5600 -2.6517 22 6 -4.5770 -10.3379 -1.9125 23 6 -4.2333 -9.8732 -0.4910 24 6 -0.1000 -2.7609 -0.1093 25 1 -0.4850 0.8400 0.0004 26 1 2.5862 -4.0810 0.3527 27 1 1.8197 -4.1196 -1.2957 28 1 0.4078 -4.2331 1.4667 29 1 -0.1100 -5.4963 -1.1817 30 1 -3.2692 -7.8203 1.3481 31 1 -1.6739 -9.6124 -3.3730 32 1 -3.2184 -8.7937 -3.7293 33 1 -5.1482 -11.2649 -1.8628 34 1 -5.1714 -9.5719 -2.4106 35 1 -3.8149 -10.7042 0.0769 36 1 -5.1319 -9.5047 0.0039 37 1 -0.5475 -2.7768 -1.1031 38 1 -0.7001 -2.2169 0.6201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030524560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:18 Heat of formation + Delta-G solvation = 20.365471 kcal Electronic energy + Delta-G solvation = -22609.270731 eV Core-core repulsion = 19068.031629 eV Total energy + Delta-G solvation = -3541.239102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.54499 -40.81728 -39.38686 -38.87259 -35.42117 -35.00388 -33.71275 -31.74281 -30.82155 -29.48347 -27.38999 -26.64835 -25.45731 -24.64252 -23.69242 -21.40340 -21.18683 -20.63114 -19.05155 -18.77336 -17.71244 -17.59840 -17.26554 -16.95080 -16.83949 -16.11960 -15.89471 -15.69088 -15.55348 -15.25596 -14.92580 -14.57718 -14.43850 -13.78989 -13.62248 -13.33721 -13.25015 -12.85193 -12.82666 -12.64058 -12.30177 -12.24390 -11.95122 -11.58066 -11.53156 -11.16407 -11.10427 -10.89696 -10.75408 -10.02470 -9.54882 -8.98297 -7.93601 -5.28973 0.48885 1.22631 1.43877 1.45674 1.48536 1.57619 2.20431 2.44528 2.50606 2.67201 2.96553 3.23028 3.38346 3.41337 3.64659 3.83821 3.88892 4.01916 4.16299 4.28510 4.32606 4.38859 4.50567 4.55923 4.67237 4.72816 4.73513 4.88470 4.89916 5.15873 5.19643 5.32320 5.45674 5.64951 5.73954 5.86619 5.97428 6.48792 6.78872 6.86564 7.24424 7.56372 8.50518 9.24130 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.040343 B = 0.002779 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.876301 B =10072.832666 C =10254.977240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.986 3.014 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.237 4.237 8 H 0.092 0.908 9 N -0.637 5.637 10 C 0.123 3.877 11 C 0.119 3.881 12 N -0.693 5.693 13 C 0.599 3.401 14 O -0.585 6.585 15 C -0.097 4.097 16 C 0.060 3.940 17 N -0.451 5.451 18 C 0.164 3.836 19 N -0.470 5.470 20 C 0.154 3.846 21 O -0.382 6.382 22 C 0.043 3.957 23 C 0.060 3.940 24 C 0.158 3.842 25 H 0.249 0.751 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.414 0.586 30 H 0.209 0.791 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.153 0.847 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.022 0.978 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.365 -26.671 -5.513 29.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.813 3.187 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.187 1.187 7 C -0.365 4.365 8 H 0.110 0.890 9 N -0.364 5.364 10 C -0.003 4.003 11 C 0.012 3.988 12 N -0.342 5.342 13 C 0.387 3.613 14 O -0.465 6.465 15 C -0.225 4.225 16 C -0.082 4.082 17 N -0.132 5.132 18 C -0.101 4.101 19 N -0.191 5.191 20 C 0.076 3.924 21 O -0.299 6.299 22 C -0.034 4.034 23 C -0.060 4.060 24 C 0.031 3.969 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.250 0.750 30 H 0.226 0.774 31 H 0.155 0.845 32 H 0.122 0.878 33 H 0.171 0.829 34 H 0.093 0.907 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.039 0.961 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -10.966 -26.088 -5.269 28.786 hybrid contribution -0.215 1.311 0.413 1.391 sum -11.181 -24.777 -4.855 27.613 Atomic orbital electron populations 1.70068 1.06783 1.25817 1.57632 1.25798 0.96606 1.01366 1.02536 0.84959 0.77881 0.78540 0.77334 1.21226 1.22181 1.18722 1.19462 0.91455 0.82868 1.42736 0.89033 1.46043 1.03187 1.02104 1.85089 1.22989 0.95116 0.83451 0.98729 1.23277 0.93170 0.84343 0.97975 1.45716 1.39902 1.31469 1.17150 1.17281 0.78599 0.80689 0.84719 1.90755 1.66508 1.70676 1.18607 1.20514 1.05955 1.02934 0.93147 1.22675 0.97903 0.90764 0.96841 1.45491 1.31716 1.25356 1.10671 1.24870 0.94400 0.97787 0.93060 1.70111 1.22874 1.11202 1.14909 1.21473 1.00327 0.83269 0.87326 1.88157 1.37900 1.29527 1.74320 1.23289 0.86689 1.05352 0.88037 1.23289 0.92350 0.88349 1.02009 1.22504 0.87372 0.90284 0.96775 0.94197 0.91328 0.92160 0.88392 0.74985 0.77420 0.84528 0.87784 0.82916 0.90735 0.87105 0.85139 0.96051 0.94935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.64 11.51 21.65 0.25 -60.39 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 3 Si 0.99 47.13 29.56 68.60 2.03 49.16 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.24 -13.83 10.70 84.03 0.90 -12.93 16 8 H 0.09 5.01 7.83 -2.91 -0.02 4.99 16 9 N -0.64 -34.66 3.70 -716.68 -2.65 -37.31 16 10 C 0.12 5.15 8.69 86.49 0.75 5.90 16 11 C 0.12 5.10 4.40 46.75 0.21 5.30 16 12 N -0.69 -25.63 5.37 -450.75 -2.42 -28.05 16 13 C 0.60 22.56 7.81 86.64 0.68 23.23 16 14 O -0.58 -25.52 16.50 -4.10 -0.07 -25.59 16 15 C -0.10 -2.99 6.99 40.53 0.28 -2.70 16 16 C 0.06 1.37 11.38 83.92 0.95 2.33 16 17 N -0.45 -7.74 3.12 -512.39 -1.60 -9.34 16 18 C 0.16 3.36 7.79 138.04 1.08 4.44 16 19 N -0.47 -13.11 10.99 -175.88 -1.93 -15.04 16 20 C 0.15 1.93 7.29 71.36 0.52 2.45 16 21 O -0.38 -4.19 10.78 -148.98 -1.61 -5.80 16 22 C 0.04 0.19 6.81 72.13 0.49 0.69 16 23 C 0.06 0.39 7.28 86.50 0.63 1.02 16 24 C 0.16 8.31 7.24 86.44 0.63 8.94 16 25 H 0.25 15.30 8.31 -92.71 -0.77 14.52 16 26 H 0.07 2.64 8.14 -2.38 -0.02 2.63 16 27 H 0.06 2.30 8.11 -2.39 -0.02 2.28 16 28 H 0.10 4.50 7.50 -2.39 -0.02 4.49 16 29 H 0.41 13.77 8.42 -92.71 -0.78 12.99 16 30 H 0.21 3.88 8.06 -2.91 -0.02 3.85 16 31 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.15 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.07 0.29 8.09 -2.39 -0.02 0.27 16 35 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.03 1.95 7.37 -2.39 -0.02 1.93 16 Total: -1.00 -82.58 325.41 -0.11 -82.69 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.31 Total: 14.69 kcal Atomic # 6 Polarization: 27.39 SS G_CDS: 7.58 Total: 34.97 kcal Atomic # 7 Polarization: -141.77 SS G_CDS: -8.35 Total: -150.12 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -1.67 Total: -31.39 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -82.58 -0.11 -82.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030524560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.056 kcal (2) G-P(sol) polarization free energy of solvation -82.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds