Wall clock time and date at job start Tue Mar 31 2020 03:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99975 * 2 1 4 4 H 1.48492 * 109.47233 * 274.43586 * 3 2 1 5 5 H 1.48499 * 109.46769 * 34.43286 * 3 2 1 6 6 H 1.48499 * 109.47114 * 154.42972 * 3 2 1 7 7 C 1.38809 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00152 * 163.16577 * 7 2 1 9 9 N 1.36941 * 119.99893 * 343.16767 * 7 2 1 10 10 C 1.47148 * 120.97938 * 333.62838 * 9 7 2 11 11 C 1.53299 * 108.38857 * 230.51476 * 10 9 7 12 12 O 1.42965 * 109.21963 * 307.70385 * 11 10 9 13 13 C 1.42961 * 114.16821 * 62.58071 * 12 11 10 14 14 H 1.08993 * 109.55714 * 57.36513 * 13 12 11 15 15 C 1.52999 * 109.51048 * 177.49751 * 13 12 11 16 16 N 1.46507 * 109.46848 * 299.74160 * 15 13 12 17 17 C 1.34774 * 119.99782 * 180.02562 * 16 15 13 18 18 O 1.21468 * 120.00109 * 0.02562 * 17 16 15 19 19 C 1.48536 * 120.00023 * 179.97438 * 17 16 15 20 20 N 1.32459 * 119.18772 * 179.97438 * 19 17 16 21 21 C 1.32118 * 120.76558 * 179.97438 * 20 19 17 22 22 C 1.38794 * 119.16415 * 0.25016 * 21 20 19 23 23 C 1.38803 * 118.50937 * 359.50984 * 22 21 20 24 24 N 1.32109 * 119.15896 * 0.49257 * 23 22 21 25 25 C 1.47151 * 120.98387 * 153.61416 * 9 7 2 26 26 H 0.96996 * 119.99656 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.68458 * 350.24137 * 10 9 7 28 28 H 1.09001 * 109.68131 * 110.75469 * 10 9 7 29 29 H 1.09001 * 109.50683 * 67.62106 * 11 10 9 30 30 H 1.08995 * 109.51781 * 187.72540 * 11 10 9 31 31 H 1.08998 * 109.47073 * 179.74366 * 15 13 12 32 32 H 1.08995 * 109.47809 * 59.73806 * 15 13 12 33 33 H 0.96993 * 120.00183 * 0.02562 * 16 15 13 34 34 H 1.07999 * 120.40998 * 179.97438 * 21 20 19 35 35 H 1.08003 * 120.74624 * 179.72046 * 22 21 20 36 36 H 1.08003 * 120.41927 * 180.24069 * 23 22 21 37 37 H 1.09000 * 109.68294 * 9.75784 * 25 9 7 38 38 H 1.09000 * 109.67830 * 249.20813 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4039 2.1006 -1.3958 5 1 1.4976 2.6238 0.7917 6 1 3.5915 1.4150 0.6043 7 6 2.0103 -1.2021 -0.0005 8 1 3.0556 -1.2220 -0.2714 9 7 1.3696 -2.3628 0.3424 10 6 0.1979 -2.3467 1.2323 11 6 0.4251 -3.3714 2.3496 12 8 0.7644 -4.6331 1.7692 13 6 1.9801 -4.6234 1.0170 14 1 2.8004 -4.2924 1.6538 15 6 2.2718 -6.0332 0.4991 16 7 2.4128 -6.9505 1.6328 17 6 2.6744 -8.2546 1.4159 18 8 2.7939 -8.6695 0.2805 19 6 2.8179 -9.1845 2.5653 20 7 3.0746 -10.4632 2.3336 21 6 3.2088 -11.3174 3.3325 22 6 3.0723 -10.8606 4.6360 23 6 2.8085 -9.5134 4.8417 24 7 2.6865 -8.7145 3.7967 25 6 1.8324 -3.6629 -0.1685 26 1 -0.4849 0.8400 0.0004 27 1 0.0785 -1.3531 1.6642 28 1 -0.6960 -2.6111 0.6673 29 1 1.2394 -3.0353 2.9917 30 1 -0.4853 -3.4744 2.9400 31 1 3.1964 -6.0242 -0.0780 32 1 1.4502 -6.3643 -0.1360 33 1 2.3178 -6.6191 2.5394 34 1 3.4176 -12.3588 3.1370 35 1 3.1724 -11.5374 5.4716 36 1 2.7003 -9.1241 5.8433 37 1 2.7954 -3.5408 -0.6643 38 1 1.1032 -4.0604 -0.8745 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035557575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:30 Heat of formation + Delta-G solvation = 4.680665 kcal Electronic energy + Delta-G solvation = -22747.775612 eV Core-core repulsion = 19205.856366 eV Total energy + Delta-G solvation = -3541.919246 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.49284 -39.38860 -38.35614 -35.05973 -34.38980 -33.98048 -32.67991 -31.49969 -30.61711 -27.69639 -26.25743 -24.99513 -24.61366 -23.17105 -21.93350 -21.03280 -19.76549 -18.50561 -17.91795 -16.91380 -16.39711 -16.14531 -15.77816 -15.55700 -15.34465 -14.93965 -14.47223 -14.22951 -14.03900 -13.97455 -13.73455 -13.22562 -13.04987 -12.72302 -12.35434 -11.61450 -11.56368 -11.30330 -11.13163 -10.86283 -10.71275 -10.40688 -10.29675 -10.16568 -10.12960 -9.97944 -9.68451 -9.65736 -9.07518 -9.00125 -8.55202 -6.76248 -5.85358 -3.28967 0.12253 0.67441 2.52268 2.69440 3.33588 3.40882 3.43002 3.59480 3.61705 4.04684 4.13463 4.26545 4.42504 4.51735 4.61235 4.89082 5.12718 5.28333 5.32392 5.47414 5.51074 5.79412 5.81637 5.84812 6.02452 6.15221 6.27836 6.37086 6.45705 6.48752 6.50642 6.75068 7.09792 7.32565 7.51263 7.68127 7.70144 7.85289 8.12893 8.32431 9.10376 9.73121 10.29938 11.22849 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.035824 B = 0.002964 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.401244 B = 9445.641952 C = 9705.764682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.389 6.389 13 C 0.065 3.935 14 H 0.061 0.939 15 C 0.130 3.870 16 N -0.694 5.694 17 C 0.579 3.421 18 O -0.510 6.510 19 C 0.289 3.711 20 N -0.470 5.470 21 C 0.144 3.856 22 C -0.213 4.213 23 C 0.147 3.853 24 N -0.492 5.492 25 C 0.122 3.878 26 H 0.255 0.745 27 H 0.094 0.906 28 H 0.028 0.972 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.415 0.585 34 H 0.176 0.824 35 H 0.154 0.846 36 H 0.177 0.823 37 H 0.065 0.935 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.206 -19.033 12.032 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.308 6.308 13 C 0.005 3.995 14 H 0.078 0.922 15 C 0.006 3.994 16 N -0.347 5.347 17 C 0.359 3.641 18 O -0.382 6.382 19 C 0.019 3.981 20 N -0.184 5.184 21 C -0.022 4.022 22 C -0.235 4.235 23 C -0.020 4.020 24 N -0.209 5.209 25 C -0.006 4.006 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.252 0.748 34 H 0.193 0.807 35 H 0.172 0.828 36 H 0.194 0.806 37 H 0.083 0.917 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.968 -18.658 10.381 21.922 hybrid contribution 0.500 0.622 1.304 1.529 sum 5.468 -18.036 11.685 22.175 Atomic orbital electron populations 1.70037 1.05286 1.25648 1.53715 1.25051 0.95345 0.98492 1.00765 0.86242 0.79148 0.83458 0.77709 1.21351 1.21487 1.20372 1.19196 0.92615 0.84428 1.42212 0.91331 1.44068 1.33657 1.01028 1.53027 1.21445 0.89134 0.98270 0.89782 1.23324 0.99074 0.84852 0.96524 1.87787 1.41163 1.32728 1.69152 1.22811 0.87717 0.93563 0.95421 0.92156 1.21559 1.02467 0.87207 0.88144 1.45736 1.69968 1.06995 1.11952 1.17241 0.78649 0.81842 0.86354 1.90811 1.49269 1.76561 1.21588 1.23003 0.94125 0.90018 0.90974 1.68279 1.10471 1.02924 1.36754 1.23413 0.90788 1.00051 0.87958 1.23196 1.01745 0.98498 1.00021 1.23347 0.90219 0.89982 0.98439 1.68355 1.12972 1.40095 0.99467 1.21447 0.99041 0.87197 0.92874 0.93505 0.88798 0.95347 0.94042 0.90021 0.89683 0.90225 0.74849 0.80693 0.82830 0.80634 0.91677 0.95128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 11.15 55.49 0.62 -25.26 16 2 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 3 Si 0.91 21.33 29.59 -169.99 -5.03 16.30 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.26 -6.90 9.65 -15.06 -0.15 -7.05 16 8 H 0.07 1.81 7.88 -52.48 -0.41 1.39 16 9 N -0.59 -14.80 3.05 -171.83 -0.52 -15.32 16 10 C 0.14 3.30 5.44 -3.53 -0.02 3.28 16 11 C 0.04 0.77 6.99 37.31 0.26 1.03 16 12 O -0.39 -7.31 10.14 -35.23 -0.36 -7.67 16 13 C 0.06 1.14 2.86 -26.58 -0.08 1.06 16 14 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 15 C 0.13 2.00 5.37 -4.04 -0.02 1.98 16 16 N -0.69 -10.16 5.44 -61.03 -0.33 -10.49 16 17 C 0.58 9.12 7.85 -12.01 -0.09 9.03 16 18 O -0.51 -9.54 16.86 5.39 0.09 -9.45 16 19 C 0.29 3.93 7.60 -157.08 -1.19 2.73 16 20 N -0.47 -5.99 10.13 -11.12 -0.11 -6.10 16 21 C 0.14 1.13 11.30 -17.22 -0.19 0.93 16 22 C -0.21 -1.19 10.18 -39.17 -0.40 -1.59 16 23 C 0.15 1.07 11.30 -17.22 -0.19 0.87 16 24 N -0.49 -5.55 9.57 -11.12 -0.11 -5.66 16 25 C 0.12 2.52 6.02 -3.53 -0.02 2.50 16 26 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.41 5.70 7.66 -40.82 -0.31 5.39 16 34 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.15 0.27 8.06 -52.48 -0.42 -0.16 16 36 H 0.18 0.65 8.06 -52.48 -0.42 0.22 16 37 H 0.06 1.27 7.96 -51.93 -0.41 0.86 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -34.01 325.89 -7.85 -41.86 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.82 Total: 2.14 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: -2.18 Total: 14.75 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.46 Total: -62.83 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.27 Total: -17.12 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.01 -7.85 -41.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035557575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.538 kcal (2) G-P(sol) polarization free energy of solvation -34.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds