Wall clock time and date at job start Tue Mar 31 2020 03:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99975 * 2 1 4 4 H 1.48492 * 109.47233 * 274.43586 * 3 2 1 5 5 H 1.48499 * 109.46769 * 34.43286 * 3 2 1 6 6 H 1.48499 * 109.47114 * 154.42972 * 3 2 1 7 7 C 1.38809 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00152 * 163.16577 * 7 2 1 9 9 N 1.36941 * 119.99893 * 343.16767 * 7 2 1 10 10 C 1.47148 * 120.97938 * 333.62838 * 9 7 2 11 11 C 1.53299 * 108.38857 * 230.51476 * 10 9 7 12 12 O 1.42965 * 109.21963 * 307.70385 * 11 10 9 13 13 C 1.42961 * 114.16821 * 62.58071 * 12 11 10 14 14 H 1.08993 * 109.55714 * 57.36513 * 13 12 11 15 15 C 1.52999 * 109.51048 * 177.49751 * 13 12 11 16 16 N 1.46507 * 109.46848 * 299.74160 * 15 13 12 17 17 C 1.34774 * 119.99782 * 180.02562 * 16 15 13 18 18 O 1.21468 * 120.00109 * 0.02562 * 17 16 15 19 19 C 1.48536 * 120.00023 * 179.97438 * 17 16 15 20 20 N 1.32459 * 119.18772 * 179.97438 * 19 17 16 21 21 C 1.32118 * 120.76558 * 179.97438 * 20 19 17 22 22 C 1.38794 * 119.16415 * 0.25016 * 21 20 19 23 23 C 1.38803 * 118.50937 * 359.50984 * 22 21 20 24 24 N 1.32109 * 119.15896 * 0.49257 * 23 22 21 25 25 C 1.47151 * 120.98387 * 153.61416 * 9 7 2 26 26 H 0.96996 * 119.99656 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.68458 * 350.24137 * 10 9 7 28 28 H 1.09001 * 109.68131 * 110.75469 * 10 9 7 29 29 H 1.09001 * 109.50683 * 67.62106 * 11 10 9 30 30 H 1.08995 * 109.51781 * 187.72540 * 11 10 9 31 31 H 1.08998 * 109.47073 * 179.74366 * 15 13 12 32 32 H 1.08995 * 109.47809 * 59.73806 * 15 13 12 33 33 H 0.96993 * 120.00183 * 0.02562 * 16 15 13 34 34 H 1.07999 * 120.40998 * 179.97438 * 21 20 19 35 35 H 1.08003 * 120.74624 * 179.72046 * 22 21 20 36 36 H 1.08003 * 120.41927 * 180.24069 * 23 22 21 37 37 H 1.09000 * 109.68294 * 9.75784 * 25 9 7 38 38 H 1.09000 * 109.67830 * 249.20813 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4039 2.1006 -1.3958 5 1 1.4976 2.6238 0.7917 6 1 3.5915 1.4150 0.6043 7 6 2.0103 -1.2021 -0.0005 8 1 3.0556 -1.2220 -0.2714 9 7 1.3696 -2.3628 0.3424 10 6 0.1979 -2.3467 1.2323 11 6 0.4251 -3.3714 2.3496 12 8 0.7644 -4.6331 1.7692 13 6 1.9801 -4.6234 1.0170 14 1 2.8004 -4.2924 1.6538 15 6 2.2718 -6.0332 0.4991 16 7 2.4128 -6.9505 1.6328 17 6 2.6744 -8.2546 1.4159 18 8 2.7939 -8.6695 0.2805 19 6 2.8179 -9.1845 2.5653 20 7 3.0746 -10.4632 2.3336 21 6 3.2088 -11.3174 3.3325 22 6 3.0723 -10.8606 4.6360 23 6 2.8085 -9.5134 4.8417 24 7 2.6865 -8.7145 3.7967 25 6 1.8324 -3.6629 -0.1685 26 1 -0.4849 0.8400 0.0004 27 1 0.0785 -1.3531 1.6642 28 1 -0.6960 -2.6111 0.6673 29 1 1.2394 -3.0353 2.9917 30 1 -0.4853 -3.4744 2.9400 31 1 3.1964 -6.0242 -0.0780 32 1 1.4502 -6.3643 -0.1360 33 1 2.3178 -6.6191 2.5394 34 1 3.4176 -12.3588 3.1370 35 1 3.1724 -11.5374 5.4716 36 1 2.7003 -9.1241 5.8433 37 1 2.7954 -3.5408 -0.6643 38 1 1.1032 -4.0604 -0.8745 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035557575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:29 Heat of formation + Delta-G solvation = -21.422531 kcal Electronic energy + Delta-G solvation = -22748.907532 eV Core-core repulsion = 19205.856366 eV Total energy + Delta-G solvation = -3543.051166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.24199 -40.64069 -39.84423 -36.57283 -35.92153 -34.81086 -33.54648 -33.20272 -32.19539 -29.33437 -27.68920 -25.99116 -25.46373 -24.91938 -23.42000 -22.15381 -21.41977 -19.54065 -18.87640 -18.63123 -17.56986 -17.09236 -17.04999 -16.76663 -16.61748 -16.13801 -16.06887 -15.50233 -15.34878 -15.17867 -14.99938 -14.60878 -14.49650 -14.38969 -13.72285 -13.22405 -13.01461 -12.69670 -12.50750 -12.32103 -12.18708 -12.07534 -12.04368 -11.87942 -11.41057 -11.21966 -10.80422 -10.75261 -10.54656 -10.38103 -10.21946 -8.75690 -7.91338 -5.38751 -0.60422 0.09718 1.46952 1.48207 1.53373 1.58562 1.67078 2.47656 2.73654 2.80845 2.89279 3.23846 3.28939 3.48474 3.67390 3.89344 3.95961 4.04735 4.11758 4.23888 4.39408 4.47022 4.50907 4.60548 4.71707 4.74646 4.79645 4.89296 5.04849 5.21585 5.24656 5.30268 5.55613 5.61358 5.90904 6.24933 6.26824 6.33138 6.84605 7.02261 7.06098 7.74006 8.27789 9.14971 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.035824 B = 0.002964 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.401244 B = 9445.641952 C = 9705.764682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.267 1.267 7 C -0.267 4.267 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.054 3.946 12 O -0.390 6.390 13 C 0.080 3.920 14 H 0.071 0.929 15 C 0.139 3.861 16 N -0.687 5.687 17 C 0.576 3.424 18 O -0.552 6.552 19 C 0.258 3.742 20 N -0.507 5.507 21 C 0.129 3.871 22 C -0.177 4.177 23 C 0.134 3.866 24 N -0.507 5.507 25 C 0.117 3.883 26 H 0.252 0.748 27 H 0.068 0.932 28 H -0.001 1.001 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.420 0.580 34 H 0.209 0.791 35 H 0.204 0.796 36 H 0.215 0.785 37 H 0.075 0.925 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.517 -20.681 14.724 26.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.800 3.200 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.396 4.396 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.018 3.982 11 C -0.023 4.023 12 O -0.310 6.310 13 C 0.020 3.980 14 H 0.088 0.912 15 C 0.015 3.985 16 N -0.339 5.339 17 C 0.359 3.641 18 O -0.428 6.428 19 C -0.012 4.012 20 N -0.223 5.223 21 C -0.036 4.036 22 C -0.199 4.199 23 C -0.031 4.031 24 N -0.225 5.225 25 C -0.009 4.009 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.017 0.983 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.258 0.742 34 H 0.226 0.774 35 H 0.221 0.779 36 H 0.231 0.769 37 H 0.093 0.907 38 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 6.295 -20.336 13.108 25.000 hybrid contribution 0.098 0.994 0.544 1.137 sum 6.393 -19.343 13.653 24.524 Atomic orbital electron populations 1.70195 1.06760 1.26073 1.55174 1.25843 0.96103 1.01664 1.00995 0.85197 0.78224 0.79231 0.77385 1.21408 1.21695 1.19152 1.19561 0.93030 0.85493 1.41531 0.90903 1.44352 1.33753 1.01929 1.53734 1.21311 0.87925 0.98367 0.90613 1.23169 1.00797 0.83541 0.94842 1.87803 1.41771 1.32265 1.69117 1.22647 0.87544 0.93864 0.93949 0.91158 1.21377 1.02634 0.86167 0.88352 1.45608 1.69681 1.06812 1.11802 1.17665 0.77480 0.82125 0.86825 1.90766 1.51253 1.77312 1.23448 1.22361 0.97718 0.90143 0.90987 1.68177 1.11613 1.03204 1.39351 1.24119 0.90351 1.00867 0.88224 1.23721 0.97376 0.98362 1.00410 1.24133 0.89419 0.90736 0.98815 1.68293 1.13424 1.41304 0.99436 1.21597 0.98979 0.86220 0.94142 0.93924 0.91368 0.98322 0.92990 0.87300 0.88537 0.91318 0.74199 0.77420 0.77914 0.76893 0.90694 0.96262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.07 11.15 21.65 0.24 -54.83 16 2 C -0.05 -2.80 4.95 84.86 0.42 -2.38 16 3 Si 0.97 44.19 29.59 68.60 2.03 46.22 16 4 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.27 -14.51 9.65 84.03 0.81 -13.70 16 8 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 9 N -0.61 -30.94 3.05 -697.54 -2.13 -33.07 16 10 C 0.14 6.94 5.44 86.36 0.47 7.41 16 11 C 0.05 2.02 6.99 72.08 0.50 2.52 16 12 O -0.39 -14.30 10.14 -148.98 -1.51 -15.81 16 13 C 0.08 2.73 2.86 30.69 0.09 2.82 16 14 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 15 C 0.14 4.25 5.37 86.38 0.46 4.72 16 16 N -0.69 -19.97 5.44 -465.30 -2.53 -22.50 16 17 C 0.58 18.50 7.85 86.99 0.68 19.19 16 18 O -0.55 -21.41 16.86 -3.62 -0.06 -21.47 16 19 C 0.26 6.91 7.60 137.68 1.05 7.96 16 20 N -0.51 -12.60 10.13 -189.10 -1.92 -14.51 16 21 C 0.13 1.67 11.30 84.78 0.96 2.62 16 22 C -0.18 -1.19 10.18 22.54 0.23 -0.96 16 23 C 0.13 1.47 11.30 84.79 0.96 2.43 16 24 N -0.51 -10.61 9.57 -189.09 -1.81 -12.42 16 25 C 0.12 4.88 6.02 86.35 0.52 5.40 16 26 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 27 H 0.07 3.64 6.15 -2.39 -0.01 3.62 16 28 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 31 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.42 11.22 7.66 -92.71 -0.71 10.51 16 34 H 0.21 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.20 -0.66 8.06 -2.91 -0.02 -0.68 16 36 H 0.21 0.55 8.06 -2.91 -0.02 0.52 16 37 H 0.07 2.92 7.96 -2.39 -0.02 2.91 16 38 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -77.31 325.89 -0.16 -77.46 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.38 Total: 12.91 kcal Atomic # 6 Polarization: 30.87 SS G_CDS: 7.15 Total: 38.02 kcal Atomic # 7 Polarization: -129.19 SS G_CDS: -8.14 Total: -137.33 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.57 Total: -37.28 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -77.31 -0.16 -77.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035557575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.041 kcal (2) G-P(sol) polarization free energy of solvation -77.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds