Wall clock time and date at job start Tue Mar 31 2020 03:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48495 * 109.47363 * 240.00008 * 3 2 1 5 5 H 1.48506 * 109.46719 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47174 * 119.99835 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.08996 * 113.46545 * 267.45937 * 12 9 7 14 14 C 1.53001 * 113.46558 * 37.83696 * 12 9 7 15 15 N 1.46504 * 109.46966 * 285.49627 * 14 12 9 16 16 C 1.34779 * 119.99668 * 180.02562 * 15 14 12 17 17 O 1.21607 * 120.00069 * 359.97438 * 16 15 14 18 18 C 1.47299 * 119.99845 * 180.02562 * 16 15 14 19 19 C 1.37933 * 125.89788 * 180.02562 * 18 16 15 20 20 C 1.39443 * 107.45557 * 179.97438 * 19 18 16 21 21 C 1.37928 * 107.46549 * 0.02562 * 20 19 18 22 22 C 1.47296 * 125.90044 * 180.02562 * 21 20 19 23 23 N 1.34772 * 119.99793 * 179.97438 * 22 21 20 24 24 O 1.21613 * 119.99750 * 359.97438 * 22 21 20 25 25 N 1.36754 * 125.89721 * 359.71178 * 18 16 15 26 26 H 0.97001 * 125.66303 * 0.02562 * 25 18 16 27 27 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 28 28 H 1.09003 * 113.46750 * 322.15715 * 10 9 7 29 29 H 1.09000 * 113.47312 * 92.60160 * 10 9 7 30 30 H 1.08996 * 114.20600 * 220.34475 * 11 10 9 31 31 H 1.08998 * 114.38368 * 87.53582 * 11 10 9 32 32 H 1.09002 * 109.47370 * 45.49563 * 14 12 9 33 33 H 1.09003 * 109.46961 * 165.49707 * 14 12 9 34 34 H 0.96999 * 120.00354 * 0.02562 * 15 14 12 35 35 H 1.08001 * 126.27177 * 0.02562 * 19 18 16 36 36 H 1.08007 * 126.26134 * 179.97438 * 20 19 18 37 37 H 0.97002 * 120.00231 * 359.97438 * 23 22 21 38 38 H 0.97002 * 119.99685 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3445 -4.0911 0.7061 12 6 1.6797 -3.8155 0.0005 13 1 1.7412 -4.2474 -0.9983 14 6 2.9022 -4.1398 0.8615 15 7 4.1160 -3.6902 0.1751 16 6 5.3216 -3.8729 0.7492 17 8 5.4019 -4.4106 1.8370 18 6 6.5419 -3.4203 0.0595 19 6 7.8317 -3.5454 0.5321 20 6 8.6829 -2.9920 -0.4237 21 6 7.8985 -2.5379 -1.4634 22 6 8.3844 -1.8812 -2.6890 23 7 7.5085 -1.4836 -3.6330 24 8 9.5759 -1.6979 -2.8491 25 7 6.5922 -2.8090 -1.1628 26 1 5.8280 -2.5998 -1.7223 27 1 -0.4849 0.8401 -0.0004 28 1 -0.7200 -2.1579 0.6255 29 1 -0.4978 -2.9554 -0.9903 30 1 -0.1719 -4.9834 0.3522 31 1 0.3904 -4.0224 1.7929 32 1 2.8169 -3.6293 1.8207 33 1 2.9555 -5.2160 1.0261 34 1 4.0519 -3.2609 -0.6924 35 1 8.1280 -3.9911 1.4702 36 1 9.7594 -2.9296 -0.3609 37 1 6.5582 -1.6302 -3.5054 38 1 7.8286 -1.0515 -4.4403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038711785.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:16 Heat of formation + Delta-G solvation = 26.243441 kcal Electronic energy + Delta-G solvation = -23001.676206 eV Core-core repulsion = 19460.691992 eV Total energy + Delta-G solvation = -3540.984214 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.63958 -39.50014 -38.81870 -38.04429 -34.36931 -34.07722 -32.36944 -31.26600 -29.99627 -28.17962 -27.63534 -24.23811 -23.60552 -22.34178 -21.39389 -20.52319 -20.13406 -19.58128 -18.99927 -17.48488 -17.04840 -16.61670 -15.74247 -15.66771 -15.28206 -14.86410 -14.71274 -14.20946 -14.17802 -13.91247 -13.66915 -13.38856 -13.01974 -12.81993 -12.75231 -12.03242 -11.65990 -11.25109 -11.11989 -10.88668 -10.72736 -10.62157 -10.21175 -10.08711 -9.97653 -9.94021 -9.39110 -9.26847 -8.94889 -8.87146 -8.42658 -7.04422 -5.90863 -3.24278 0.90180 2.08773 2.64732 3.12389 3.15958 3.23365 3.25338 3.32846 3.34099 3.41753 4.29409 4.59099 4.75513 5.04785 5.10319 5.13025 5.26176 5.43869 5.56291 5.73389 5.76768 5.94881 5.96771 6.18121 6.26853 6.28608 6.43375 6.47194 6.54122 6.62412 6.67647 6.85584 7.06117 7.08446 7.26074 7.44323 7.62302 7.83114 7.87147 8.25610 8.87643 9.55748 10.48630 11.25928 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.005028 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.726676 B = 5567.562292 C = 6902.029846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.003 4.003 3 Si 0.908 3.092 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.152 3.848 11 C -0.160 4.160 12 C 0.126 3.874 13 H 0.048 0.952 14 C 0.121 3.879 15 N -0.710 5.710 16 C 0.580 3.420 17 O -0.529 6.529 18 C 0.002 3.998 19 C -0.128 4.128 20 C -0.116 4.116 21 C -0.031 4.031 22 C 0.595 3.405 23 N -0.853 5.853 24 O -0.529 6.529 25 N -0.520 5.520 26 H 0.418 0.582 27 H 0.255 0.745 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.396 0.604 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.399 0.601 38 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.943 -7.423 -5.230 12.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.201 4.201 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.026 3.974 11 C -0.199 4.199 12 C 0.018 3.982 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.360 5.360 16 C 0.365 3.635 17 O -0.405 6.405 18 C -0.116 4.116 19 C -0.154 4.154 20 C -0.143 4.143 21 C -0.147 4.147 22 C 0.381 3.619 23 N -0.417 5.417 24 O -0.405 6.405 25 N -0.118 5.118 26 H 0.256 0.744 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.230 0.770 35 H 0.175 0.825 36 H 0.173 0.827 37 H 0.227 0.773 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 9.657 -7.344 -4.481 12.934 hybrid contribution -0.431 1.501 -1.172 1.953 sum 9.226 -5.843 -5.654 12.297 Atomic orbital electron populations 1.69808 1.04976 1.25578 1.55723 1.24773 0.95631 0.97416 1.02244 0.86288 0.78590 0.83460 0.77904 1.21328 1.21401 1.20992 1.18711 0.89764 0.81386 1.44869 0.90545 1.45631 1.02652 0.98448 1.86038 1.22030 0.88625 0.90217 0.96534 1.23664 0.96695 0.99111 1.00445 1.22439 0.92055 0.87854 0.95841 0.93459 1.21910 0.82583 0.98554 0.97266 1.45886 1.06124 1.60841 1.23135 1.17184 0.81833 0.79383 0.85078 1.90813 1.86217 1.43620 1.19858 1.20840 0.96364 1.06487 0.87935 1.21288 0.89658 1.03638 1.00845 1.21280 0.99836 1.00812 0.92339 1.20456 0.83687 1.11489 0.99106 1.17161 0.85827 0.77359 0.81582 1.43742 1.10455 1.64313 1.23177 1.90869 1.15308 1.56057 1.78258 1.41997 1.07698 1.45540 1.16580 0.74356 0.93468 0.90938 0.95658 0.92267 0.90090 0.90635 0.91789 0.77000 0.82540 0.82662 0.77303 0.75899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.67 11.51 55.49 0.64 -25.03 16 2 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 3 Si 0.91 20.98 29.55 -169.99 -5.02 15.96 16 4 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.22 -5.51 10.55 -15.06 -0.16 -5.66 16 8 H 0.08 1.81 7.51 -52.49 -0.39 1.41 16 9 N -0.60 -13.59 3.65 -176.98 -0.65 -14.24 16 10 C 0.15 3.25 7.39 -8.50 -0.06 3.19 16 11 C -0.16 -2.70 8.03 -26.21 -0.21 -2.91 16 12 C 0.13 2.20 4.10 -72.39 -0.30 1.91 16 13 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 14 C 0.12 2.00 5.52 -4.04 -0.02 1.97 16 15 N -0.71 -10.82 5.33 -61.42 -0.33 -11.15 16 16 C 0.58 9.27 7.81 -12.58 -0.10 9.17 16 17 O -0.53 -10.07 16.87 5.27 0.09 -9.98 16 18 C 0.00 0.03 7.04 -82.10 -0.58 -0.55 16 19 C -0.13 -1.66 10.60 -39.24 -0.42 -2.08 16 20 C -0.12 -1.42 10.60 -39.25 -0.42 -1.83 16 21 C -0.03 -0.36 7.04 -82.10 -0.58 -0.94 16 22 C 0.60 6.99 8.08 -12.58 -0.10 6.89 16 23 N -0.85 -6.69 8.87 30.40 0.27 -6.42 16 24 O -0.53 -8.01 17.71 5.27 0.09 -7.91 16 25 N -0.52 -5.73 5.90 -5.89 -0.03 -5.76 16 26 H 0.42 3.58 7.34 -40.82 -0.30 3.28 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.07 1.77 7.13 -51.93 -0.37 1.40 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 5.45 7.48 -40.82 -0.31 5.15 16 35 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.16 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.40 2.30 7.93 -40.82 -0.32 1.98 16 38 H 0.41 2.62 8.93 -40.82 -0.36 2.26 16 LS Contribution 332.55 15.07 5.01 5.01 Total: -1.00 -33.35 332.55 -7.54 -40.89 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -4.57 Total: 9.65 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -3.03 Total: 8.98 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -0.10 Total: -62.60 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.18 Total: -17.89 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.35 -7.54 -40.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038711785.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.131 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds