Wall clock time and date at job start Tue Mar 31 2020 03:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48495 * 109.47363 * 240.00008 * 3 2 1 5 5 H 1.48506 * 109.46719 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47174 * 119.99835 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.08996 * 113.46545 * 267.45937 * 12 9 7 14 14 C 1.53001 * 113.46558 * 37.83696 * 12 9 7 15 15 N 1.46504 * 109.46966 * 285.49627 * 14 12 9 16 16 C 1.34779 * 119.99668 * 180.02562 * 15 14 12 17 17 O 1.21607 * 120.00069 * 359.97438 * 16 15 14 18 18 C 1.47299 * 119.99845 * 180.02562 * 16 15 14 19 19 C 1.37933 * 125.89788 * 180.02562 * 18 16 15 20 20 C 1.39443 * 107.45557 * 179.97438 * 19 18 16 21 21 C 1.37928 * 107.46549 * 0.02562 * 20 19 18 22 22 C 1.47296 * 125.90044 * 180.02562 * 21 20 19 23 23 N 1.34772 * 119.99793 * 179.97438 * 22 21 20 24 24 O 1.21613 * 119.99750 * 359.97438 * 22 21 20 25 25 N 1.36754 * 125.89721 * 359.71178 * 18 16 15 26 26 H 0.97001 * 125.66303 * 0.02562 * 25 18 16 27 27 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 28 28 H 1.09003 * 113.46750 * 322.15715 * 10 9 7 29 29 H 1.09000 * 113.47312 * 92.60160 * 10 9 7 30 30 H 1.08996 * 114.20600 * 220.34475 * 11 10 9 31 31 H 1.08998 * 114.38368 * 87.53582 * 11 10 9 32 32 H 1.09002 * 109.47370 * 45.49563 * 14 12 9 33 33 H 1.09003 * 109.46961 * 165.49707 * 14 12 9 34 34 H 0.96999 * 120.00354 * 0.02562 * 15 14 12 35 35 H 1.08001 * 126.27177 * 0.02562 * 19 18 16 36 36 H 1.08007 * 126.26134 * 179.97438 * 20 19 18 37 37 H 0.97002 * 120.00231 * 359.97438 * 23 22 21 38 38 H 0.97002 * 119.99685 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3445 -4.0911 0.7061 12 6 1.6797 -3.8155 0.0005 13 1 1.7412 -4.2474 -0.9983 14 6 2.9022 -4.1398 0.8615 15 7 4.1160 -3.6902 0.1751 16 6 5.3216 -3.8729 0.7492 17 8 5.4019 -4.4106 1.8370 18 6 6.5419 -3.4203 0.0595 19 6 7.8317 -3.5454 0.5321 20 6 8.6829 -2.9920 -0.4237 21 6 7.8985 -2.5379 -1.4634 22 6 8.3844 -1.8812 -2.6890 23 7 7.5085 -1.4836 -3.6330 24 8 9.5759 -1.6979 -2.8491 25 7 6.5922 -2.8090 -1.1628 26 1 5.8280 -2.5998 -1.7223 27 1 -0.4849 0.8401 -0.0004 28 1 -0.7200 -2.1579 0.6255 29 1 -0.4978 -2.9554 -0.9903 30 1 -0.1719 -4.9834 0.3522 31 1 0.3904 -4.0224 1.7929 32 1 2.8169 -3.6293 1.8207 33 1 2.9555 -5.2160 1.0261 34 1 4.0519 -3.2609 -0.6924 35 1 8.1280 -3.9911 1.4702 36 1 9.7594 -2.9296 -0.3609 37 1 6.5582 -1.6302 -3.5054 38 1 7.8286 -1.0515 -4.4403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038711785.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:16 Heat of formation + Delta-G solvation = -0.791427 kcal Electronic energy + Delta-G solvation = -23002.848526 eV Core-core repulsion = 19460.691992 eV Total energy + Delta-G solvation = -3542.156534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.63195 -40.71708 -39.98865 -39.43982 -35.69574 -34.94080 -34.25574 -32.24375 -31.08373 -29.94167 -28.98762 -25.39699 -25.33633 -23.65624 -22.51999 -21.55163 -21.25855 -20.94102 -20.20022 -18.71104 -18.16787 -17.84355 -17.14487 -17.04152 -16.56907 -16.12590 -15.93814 -15.71150 -15.28269 -15.12699 -14.95996 -14.72014 -14.44170 -13.80297 -13.77490 -13.59504 -13.33264 -12.95042 -12.71939 -12.60754 -12.36152 -11.90001 -11.68911 -11.61569 -11.37972 -10.95252 -10.89495 -10.82607 -10.22291 -10.18013 -9.45054 -8.89230 -7.87927 -5.19291 -0.11422 1.05734 1.41646 1.46560 1.50610 1.67894 2.04064 2.18993 2.25175 2.36939 2.45572 3.34526 3.42210 3.68542 3.80231 3.94949 4.08946 4.14571 4.22847 4.35106 4.64150 4.70070 4.76116 4.87945 5.03352 5.07804 5.10054 5.27335 5.32490 5.37331 5.59088 5.65130 5.73002 5.75286 5.96897 6.00721 6.26822 6.43066 6.92347 7.02996 7.07408 7.64233 8.64086 9.29512 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.005028 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.726676 B = 5567.562292 C = 6902.029846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.302 1.302 6 H -0.288 1.288 7 C -0.206 4.206 8 H 0.089 0.911 9 N -0.628 5.628 10 C 0.142 3.858 11 C -0.136 4.136 12 C 0.134 3.866 13 H 0.074 0.926 14 C 0.128 3.872 15 N -0.705 5.705 16 C 0.582 3.418 17 O -0.564 6.564 18 C -0.016 4.016 19 C -0.128 4.128 20 C -0.126 4.126 21 C -0.023 4.023 22 C 0.596 3.404 23 N -0.832 5.832 24 O -0.566 6.566 25 N -0.504 5.504 26 H 0.430 0.570 27 H 0.245 0.755 28 H 0.033 0.967 29 H 0.025 0.975 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.405 0.595 35 H 0.161 0.839 36 H 0.166 0.834 37 H 0.412 0.588 38 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.956 -8.443 -6.436 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.228 1.228 6 H -0.215 1.215 7 C -0.335 4.335 8 H 0.106 0.894 9 N -0.354 5.354 10 C 0.016 3.984 11 C -0.175 4.175 12 C 0.028 3.972 13 H 0.092 0.908 14 C 0.004 3.996 15 N -0.355 5.355 16 C 0.370 3.630 17 O -0.443 6.443 18 C -0.134 4.134 19 C -0.154 4.154 20 C -0.152 4.152 21 C -0.141 4.141 22 C 0.381 3.619 23 N -0.396 5.396 24 O -0.445 6.445 25 N -0.103 5.103 26 H 0.271 0.729 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.240 0.760 35 H 0.179 0.821 36 H 0.184 0.816 37 H 0.242 0.758 38 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 10.643 -8.385 -5.745 14.717 hybrid contribution -0.735 1.746 -0.829 2.068 sum 9.908 -6.639 -6.574 13.618 Atomic orbital electron populations 1.69992 1.06309 1.25232 1.58603 1.25477 0.96295 1.00350 1.03923 0.85391 0.77247 0.79988 0.78154 1.19445 1.22829 1.21490 1.19114 0.90496 0.82346 1.41497 0.89371 1.45939 1.03558 0.99966 1.85980 1.22045 0.87850 0.92085 0.96396 1.23493 0.95876 0.98122 0.99976 1.22582 0.92763 0.84717 0.97127 0.90829 1.21721 0.82700 0.99478 0.95698 1.45798 1.05675 1.60701 1.23325 1.17390 0.82387 0.78643 0.84627 1.90793 1.86756 1.45336 1.21446 1.20508 0.95541 1.08299 0.89073 1.21455 0.89629 1.03195 1.01152 1.21472 1.00504 1.00926 0.92309 1.20565 0.83818 1.10665 0.99087 1.17137 0.85601 0.77252 0.81902 1.43585 1.10748 1.62721 1.22531 1.90861 1.16884 1.57744 1.78999 1.41858 1.07938 1.44659 1.15854 0.72934 0.94630 0.94819 0.95764 0.88245 0.90334 0.93557 0.89618 0.76022 0.82120 0.81647 0.75790 0.74722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.75 11.51 21.65 0.25 -54.50 16 2 C -0.07 -3.58 5.50 84.86 0.47 -3.11 16 3 Si 0.96 43.21 29.55 68.60 2.03 45.24 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.21 -10.14 10.55 84.03 0.89 -9.25 16 8 H 0.09 4.01 7.51 -2.91 -0.02 3.98 16 9 N -0.63 -27.69 3.65 -713.85 -2.61 -30.30 16 10 C 0.14 6.03 7.39 83.18 0.61 6.64 16 11 C -0.14 -4.24 8.03 30.94 0.25 -3.99 16 12 C 0.13 4.33 4.10 41.80 0.17 4.51 16 13 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 14 C 0.13 3.96 5.52 86.38 0.48 4.43 16 15 N -0.71 -19.94 5.33 -466.49 -2.49 -22.43 16 16 C 0.58 17.73 7.81 86.63 0.68 18.41 16 17 O -0.56 -21.01 16.87 -4.05 -0.07 -21.08 16 18 C -0.02 -0.41 7.04 40.69 0.29 -0.12 16 19 C -0.13 -3.13 10.60 22.49 0.24 -2.89 16 20 C -0.13 -2.86 10.60 22.49 0.24 -2.62 16 21 C -0.02 -0.50 7.04 40.69 0.29 -0.22 16 22 C 0.60 12.69 8.08 86.63 0.70 13.39 16 23 N -0.83 -10.67 8.87 -175.99 -1.56 -12.23 16 24 O -0.57 -16.29 17.71 -4.07 -0.07 -16.36 16 25 N -0.50 -9.86 5.90 -172.55 -1.02 -10.88 16 26 H 0.43 6.06 7.34 -92.71 -0.68 5.38 16 27 H 0.24 13.96 8.31 -92.71 -0.77 13.19 16 28 H 0.03 1.68 7.13 -2.39 -0.02 1.66 16 29 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.08 2.51 8.12 -2.39 -0.02 2.49 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.40 10.00 7.48 -92.71 -0.69 9.31 16 35 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 36 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.41 3.36 7.93 -92.71 -0.74 2.62 16 38 H 0.42 4.19 8.93 -92.71 -0.83 3.37 16 Total: -1.00 -72.92 332.55 -2.03 -74.96 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -1.79 Total: 22.40 kcal Atomic # 6 Polarization: 19.88 SS G_CDS: 5.29 Total: 25.17 kcal Atomic # 7 Polarization: -122.91 SS G_CDS: -7.42 Total: -130.33 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.14 Total: -37.44 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -72.92 -2.03 -74.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038711785.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.167 kcal (2) G-P(sol) polarization free energy of solvation -72.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds