Wall clock time and date at job start Tue Mar 31 2020 03:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99760 * 2 1 4 4 H 1.48503 * 109.46914 * 274.80789 * 3 2 1 5 5 H 1.48497 * 109.47512 * 34.81048 * 3 2 1 6 6 H 1.48504 * 109.46638 * 154.81088 * 3 2 1 7 7 C 1.38810 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99897 * 187.60750 * 7 2 1 9 9 N 1.36939 * 119.99898 * 7.61430 * 7 2 1 10 10 C 1.47575 * 134.49050 * 7.05288 * 9 7 2 11 11 C 1.53949 * 86.11739 * 155.35832 * 10 9 7 12 12 C 1.47581 * 134.49233 * 187.05294 * 9 7 2 13 13 H 1.08997 * 113.87028 * 90.32540 * 12 9 7 14 14 C 1.53001 * 113.76812 * 318.93917 * 12 9 7 15 15 N 1.46502 * 109.46762 * 78.50586 * 14 12 9 16 16 C 1.34780 * 119.99632 * 179.97438 * 15 14 12 17 17 O 1.21612 * 120.00266 * 0.02562 * 16 15 14 18 18 C 1.47301 * 120.00024 * 180.02562 * 16 15 14 19 19 C 1.37925 * 125.90177 * 180.02562 * 18 16 15 20 20 C 1.39450 * 107.46211 * 179.97438 * 19 18 16 21 21 C 1.37929 * 107.45899 * 359.97438 * 20 19 18 22 22 C 1.47296 * 125.90039 * 179.97438 * 21 20 19 23 23 N 1.34775 * 120.00206 * 179.74599 * 22 21 20 24 24 O 1.21616 * 120.00072 * 0.02562 * 22 21 20 25 25 N 1.36755 * 125.89592 * 0.26750 * 18 16 15 26 26 H 0.97008 * 125.66621 * 0.03217 * 25 18 16 27 27 H 0.97002 * 119.99817 * 359.97438 * 1 2 3 28 28 H 1.08998 * 113.77303 * 41.06105 * 10 9 7 29 29 H 1.09003 * 113.87177 * 269.66860 * 10 9 7 30 30 H 1.08993 * 113.74518 * 269.26041 * 11 10 9 31 31 H 1.09003 * 113.84076 * 137.96197 * 11 10 9 32 32 H 1.09001 * 109.47214 * 318.50653 * 14 12 9 33 33 H 1.08997 * 109.47023 * 198.50410 * 14 12 9 34 34 H 0.96999 * 120.00559 * 359.97438 * 15 14 12 35 35 H 1.07994 * 126.26890 * 359.97438 * 19 18 16 36 36 H 1.07993 * 126.26959 * 179.97438 * 20 19 18 37 37 H 0.96997 * 120.00576 * 180.27321 * 23 22 21 38 38 H 0.97002 * 120.00211 * 0.27968 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3960 2.1051 -1.3952 5 1 1.5022 2.6212 0.7992 6 1 3.5949 1.4129 0.5959 7 6 2.0103 -1.2021 0.0005 8 1 3.0831 -1.2062 0.1244 9 7 1.3346 -2.3829 -0.1561 10 6 -0.0617 -2.7414 -0.4719 11 6 0.5096 -4.0680 -1.0047 12 6 1.7102 -3.8079 -0.0768 13 1 1.5981 -4.2389 0.9181 14 6 3.0636 -4.1253 -0.7159 15 7 4.1392 -3.7338 0.1985 16 6 5.4261 -3.9213 -0.1555 17 8 5.6945 -4.4151 -1.2340 18 6 6.5077 -3.5283 0.7641 19 6 7.8597 -3.6636 0.5273 20 6 8.5317 -3.1714 1.6457 21 6 7.5785 -2.7433 2.5460 22 6 7.8436 -2.1508 3.8682 23 7 6.8172 -1.7677 4.6531 24 8 8.9889 -2.0025 4.2495 25 7 6.3445 -2.9703 2.0019 26 1 5.4946 -2.7669 2.4231 27 1 -0.4850 0.8401 0.0004 28 1 -0.5122 -2.1162 -1.2427 29 1 -0.6967 -2.8578 0.4063 30 1 0.7610 -4.0433 -2.0649 31 1 -0.0776 -4.9435 -0.7275 32 1 3.1624 -3.5734 -1.6506 33 1 3.1287 -5.1946 -0.9168 34 1 3.9253 -3.3397 1.0585 35 1 8.3146 -4.0753 -0.3614 36 1 9.6023 -3.1325 1.7819 37 1 6.9919 -1.3738 5.5222 38 1 5.9037 -1.8859 4.3491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038711786.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:19 Heat of formation + Delta-G solvation = 21.704210 kcal Electronic energy + Delta-G solvation = -22949.305848 eV Core-core repulsion = 19408.124798 eV Total energy + Delta-G solvation = -3541.181050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64524 -39.48865 -38.77600 -37.91486 -34.38182 -34.08215 -32.33817 -31.27191 -30.00676 -28.12423 -27.66810 -24.27356 -23.49718 -22.46267 -21.42597 -20.53353 -20.14449 -19.54963 -18.93399 -17.48709 -17.04913 -16.58331 -15.76000 -15.67883 -15.29864 -14.86776 -14.72908 -14.20597 -14.16546 -13.91642 -13.68165 -13.42299 -13.04475 -12.82625 -12.76205 -12.01288 -11.53157 -11.27711 -11.18979 -10.87032 -10.67960 -10.60489 -10.26211 -10.09109 -9.97089 -9.84970 -9.53893 -9.27422 -8.93144 -8.86024 -8.43564 -7.03536 -5.92025 -3.23569 0.89508 2.08017 2.64094 3.11430 3.15951 3.22165 3.27261 3.33181 3.36012 3.40533 4.30197 4.58620 4.74169 4.98947 5.09707 5.11867 5.25807 5.47827 5.55443 5.72749 5.77054 5.93408 5.95962 6.16621 6.27078 6.27954 6.42935 6.47782 6.53019 6.62317 6.68820 6.85090 7.05695 7.09514 7.28187 7.42045 7.60905 7.83312 7.86717 8.24257 8.89480 9.56956 10.46269 11.25559 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.004906 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.746391 B = 5706.160833 C = 6989.887829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.003 4.003 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.601 5.601 10 C 0.165 3.835 11 C -0.156 4.156 12 C 0.123 3.877 13 H 0.049 0.951 14 C 0.123 3.877 15 N -0.711 5.711 16 C 0.580 3.420 17 O -0.529 6.529 18 C 0.002 3.998 19 C -0.128 4.128 20 C -0.116 4.116 21 C -0.030 4.030 22 C 0.595 3.405 23 N -0.853 5.853 24 O -0.529 6.529 25 N -0.520 5.520 26 H 0.418 0.582 27 H 0.255 0.745 28 H 0.061 0.939 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.409 0.591 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.055 -7.913 6.069 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.200 4.200 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.327 5.327 10 C 0.040 3.960 11 C -0.195 4.195 12 C 0.016 3.984 13 H 0.066 0.934 14 C -0.001 4.001 15 N -0.361 5.361 16 C 0.365 3.635 17 O -0.405 6.405 18 C -0.116 4.116 19 C -0.154 4.154 20 C -0.143 4.143 21 C -0.147 4.147 22 C 0.381 3.619 23 N -0.417 5.417 24 O -0.405 6.405 25 N -0.118 5.118 26 H 0.257 0.743 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.230 0.770 35 H 0.175 0.825 36 H 0.173 0.827 37 H 0.241 0.759 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 8.881 -7.852 5.475 13.058 hybrid contribution -0.633 1.528 1.022 1.944 sum 8.248 -6.324 6.498 12.257 Atomic orbital electron populations 1.69840 1.04994 1.25484 1.55788 1.24789 0.95564 0.97523 1.02159 0.86218 0.78488 0.83834 0.77811 1.21437 1.21692 1.20790 1.18889 0.90375 0.82133 1.43969 0.90569 1.46148 1.06209 0.98460 1.81931 1.22065 0.87690 0.89461 0.96758 1.23768 0.97117 0.99086 0.99492 1.22509 0.91640 0.87941 0.96336 0.93391 1.21854 0.85478 0.99186 0.93579 1.45890 1.05428 1.63068 1.21667 1.17183 0.81651 0.79013 0.85604 1.90815 1.83105 1.44601 1.21965 1.20833 0.96181 1.07582 0.87053 1.21287 0.90313 1.03859 0.99963 1.21281 0.99176 1.01258 0.92564 1.20457 0.85094 1.12404 0.96756 1.17163 0.85059 0.77036 0.82677 1.43740 1.09158 1.66405 1.22377 1.90870 1.20887 1.55392 1.73338 1.41998 1.07950 1.47296 1.14560 0.74348 0.93539 0.92095 0.94969 0.90417 0.92598 0.90561 0.91667 0.77001 0.82540 0.82661 0.75896 0.77305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.71 11.76 55.49 0.65 -25.06 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.17 16 3 Si 0.91 21.14 29.56 -169.99 -5.02 16.12 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.23 -5.69 10.49 -15.06 -0.16 -5.84 16 8 H 0.08 1.84 7.80 -52.49 -0.41 1.43 16 9 N -0.60 -13.59 3.56 -170.75 -0.61 -14.20 16 10 C 0.17 3.56 7.31 -2.98 -0.02 3.54 16 11 C -0.16 -2.60 7.86 -25.80 -0.20 -2.81 16 12 C 0.12 2.15 4.33 -66.86 -0.29 1.86 16 13 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 14 C 0.12 2.01 5.54 -4.04 -0.02 1.99 16 15 N -0.71 -10.70 5.51 -61.42 -0.34 -11.04 16 16 C 0.58 9.18 7.81 -12.57 -0.10 9.08 16 17 O -0.53 -9.97 16.87 5.27 0.09 -9.88 16 18 C 0.00 0.02 7.04 -82.10 -0.58 -0.55 16 19 C -0.13 -1.65 10.60 -39.24 -0.42 -2.06 16 20 C -0.12 -1.41 10.60 -39.24 -0.42 -1.83 16 21 C -0.03 -0.36 7.04 -82.10 -0.58 -0.94 16 22 C 0.60 6.95 8.08 -12.58 -0.10 6.85 16 23 N -0.85 -6.61 8.87 30.40 0.27 -6.34 16 24 O -0.53 -7.98 17.71 5.26 0.09 -7.88 16 25 N -0.52 -5.67 5.90 -5.89 -0.03 -5.71 16 26 H 0.42 3.53 7.34 -40.82 -0.30 3.23 16 27 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.06 1.46 7.69 -51.93 -0.40 1.06 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.40 5.37 7.57 -40.82 -0.31 5.06 16 35 H 0.16 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.41 2.59 8.93 -40.82 -0.36 2.22 16 38 H 0.40 2.25 7.93 -40.82 -0.32 1.93 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -33.54 333.76 -7.47 -41.01 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -4.62 Total: 8.84 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -2.98 Total: 9.11 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.06 Total: -62.34 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.18 Total: -17.76 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.54 -7.47 -41.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038711786.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.710 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds