Wall clock time and date at job start Tue Mar 31 2020 04:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99859 * 2 1 4 4 H 1.48505 * 109.47402 * 269.99751 * 3 2 1 5 5 H 1.48494 * 109.47376 * 30.00582 * 3 2 1 6 6 H 1.48513 * 109.46867 * 150.00427 * 3 2 1 7 7 C 1.38814 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99553 * 179.97438 * 7 2 1 9 9 N 1.36927 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.47434 * 126.06493 * 0.02689 * 9 7 2 11 11 C 1.54496 * 107.15208 * 181.60605 * 10 9 7 12 12 C 1.56025 * 102.61411 * 22.83838 * 11 10 9 13 13 H 1.08999 * 112.86154 * 202.93014 * 12 11 10 14 14 C 1.53096 * 106.39108 * 78.38639 * 12 11 10 15 15 C 1.52845 * 110.57255 * 195.41458 * 14 12 11 16 16 N 1.47077 * 107.95175 * 57.34771 * 15 14 12 17 17 C 1.34771 * 121.15918 * 122.75040 * 16 15 14 18 18 O 1.21507 * 119.99812 * 174.55424 * 17 16 15 19 19 C 1.48279 * 120.00183 * 354.55601 * 17 16 15 20 20 C 1.47494 * 128.70964 * 184.87137 * 19 17 16 21 21 N 1.30656 * 102.71416 * 179.85429 * 20 19 17 22 22 O 1.20841 * 109.61218 * 0.43041 * 21 20 19 23 23 N 1.20900 * 115.91347 * 359.69477 * 22 21 20 24 24 C 1.46762 * 117.62190 * 302.69252 * 16 15 14 25 25 C 1.46466 * 126.05752 * 180.02562 * 9 7 2 26 26 H 1.09007 * 108.42404 * 269.25762 * 25 9 7 27 27 H 0.97005 * 119.99666 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.90193 * 300.98680 * 10 9 7 29 29 H 1.09003 * 109.90128 * 62.22032 * 10 9 7 30 30 H 1.09000 * 110.78610 * 141.12341 * 11 10 9 31 31 H 1.09000 * 110.78022 * 264.55965 * 11 10 9 32 32 H 1.08997 * 109.25982 * 315.69619 * 14 12 11 33 33 H 1.09002 * 109.25802 * 75.17312 * 14 12 11 34 34 H 1.09000 * 109.75930 * 176.97339 * 15 14 12 35 35 H 1.08993 * 109.76007 * 297.68828 * 15 14 12 36 36 H 1.07997 * 128.64053 * 359.97438 * 20 19 17 37 37 H 1.09000 * 109.22774 * 292.23066 * 24 16 15 38 38 H 1.09001 * 109.22205 * 172.82924 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1406 -2.5437 -0.0006 11 6 -0.4378 -4.0592 0.0408 12 6 0.8719 -4.6467 0.6523 13 1 1.0213 -5.6973 0.4033 14 6 0.7964 -4.3928 2.1602 15 6 2.1698 -4.5771 2.8052 16 7 3.1089 -3.6599 2.1419 17 6 3.8015 -2.7422 2.8451 18 8 4.6436 -2.0624 2.2928 19 6 3.5358 -2.5622 4.2928 20 6 4.1018 -1.5617 5.2170 21 7 3.5251 -1.8592 6.3510 22 8 2.7914 -2.8068 6.1967 23 7 2.7405 -3.2586 5.0764 24 6 3.2655 -3.7808 0.6877 25 6 1.9198 -3.7267 -0.0005 26 1 2.0474 -4.0470 -1.0346 27 1 -0.4850 0.8401 0.0004 28 1 -0.5653 -2.0581 0.8781 29 1 -0.5600 -2.1079 -0.9074 30 1 -1.2927 -4.2683 0.6840 31 1 -0.6040 -4.4483 -0.9637 32 1 0.4503 -3.3744 2.3364 33 1 0.0925 -5.0943 2.6081 34 1 2.1124 -4.3412 3.8679 35 1 2.5036 -5.6062 2.6736 36 1 4.8140 -0.7772 5.0079 37 1 3.7493 -4.7298 0.4564 38 1 3.8877 -2.9628 0.3245 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042275541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:17 Heat of formation + Delta-G solvation = 111.025076 kcal Electronic energy + Delta-G solvation = -24924.884600 eV Core-core repulsion = 21387.576793 eV Total energy + Delta-G solvation = -3537.307806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.98734 -41.50686 -39.71673 -36.84800 -35.76175 -35.54763 -34.69281 -32.86180 -30.96038 -30.12442 -27.49522 -26.53299 -25.50886 -24.65949 -23.92283 -21.86476 -21.76118 -20.15051 -20.00358 -19.25632 -18.52558 -18.49799 -17.24427 -16.73502 -16.28185 -16.10891 -15.89394 -15.63847 -15.27872 -14.62552 -14.53814 -14.35851 -13.82896 -13.77500 -13.45925 -13.20214 -13.00232 -12.79916 -12.68291 -12.46171 -12.41944 -12.23539 -12.05038 -11.84446 -11.69537 -11.54105 -11.40683 -11.25712 -10.95490 -10.68136 -9.69089 -8.82643 -7.84700 -5.15490 -0.36263 0.28002 1.37722 1.38490 1.44361 1.48626 1.92328 2.31183 2.43809 2.47023 2.83447 3.33689 3.41422 3.59181 3.66691 3.85560 3.95510 4.10097 4.24764 4.38282 4.44636 4.46100 4.59721 4.65465 4.72344 4.84690 4.94739 4.99013 5.09217 5.15070 5.27222 5.51791 5.53471 5.62823 5.71415 5.80732 6.21465 6.23357 6.84584 7.13104 7.34787 7.81822 8.45738 9.25832 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013095 B = 0.008009 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.721480 B = 3495.110471 C = 4649.901919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.954 3.046 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.208 4.208 8 H 0.073 0.927 9 N -0.606 5.606 10 C 0.186 3.814 11 C -0.130 4.130 12 C -0.086 4.086 13 H 0.127 0.873 14 C -0.115 4.115 15 C 0.082 3.918 16 N -0.575 5.575 17 C 0.597 3.403 18 O -0.553 6.553 19 C -0.044 4.044 20 C 0.043 3.957 21 N -0.356 5.356 22 O 0.343 5.657 23 N -0.314 5.314 24 C 0.118 3.882 25 C 0.140 3.860 26 H 0.037 0.963 27 H 0.242 0.758 28 H 0.004 0.996 29 H -0.001 1.001 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.248 0.752 37 H 0.105 0.895 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.349 -13.441 8.736 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.784 3.216 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.338 4.338 8 H 0.091 0.909 9 N -0.331 5.331 10 C 0.061 3.939 11 C -0.168 4.168 12 C -0.105 4.105 13 H 0.144 0.856 14 C -0.153 4.153 15 C -0.039 4.039 16 N -0.306 5.306 17 C 0.382 3.618 18 O -0.430 6.430 19 C -0.208 4.208 20 C -0.142 4.142 21 N -0.079 5.079 22 O 0.118 5.882 23 N -0.036 5.036 24 C -0.005 4.005 25 C 0.033 3.967 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.022 0.978 29 H 0.017 0.983 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.118 0.882 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.264 0.736 37 H 0.123 0.877 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.112 -13.350 9.284 16.773 hybrid contribution 0.577 2.204 -1.056 2.511 sum 4.688 -11.146 8.229 14.626 Atomic orbital electron populations 1.70164 1.05773 1.24548 1.59496 1.25378 0.96358 1.00180 1.03955 0.85405 0.77786 0.80827 0.77535 1.21291 1.22215 1.20278 1.19149 0.90372 0.83597 1.40658 0.90939 1.44483 1.02096 1.00418 1.86134 1.20959 0.83706 0.92345 0.96894 1.23030 0.97943 0.94832 1.01008 1.22470 0.94093 0.99355 0.94569 0.85558 1.21748 0.96923 1.01407 0.95231 1.22615 0.88295 0.93988 0.99052 1.47807 1.41076 1.33369 1.08346 1.16769 0.81869 0.80323 0.82834 1.90784 1.35146 1.47153 1.69907 1.26184 0.99158 0.97545 0.97919 1.28082 1.00832 1.00549 0.84761 1.75056 1.05772 1.03222 1.23853 1.85054 1.46550 1.32220 1.24359 1.75140 1.16342 1.19503 0.92657 1.21487 0.98147 1.02869 0.77965 1.21044 0.92559 0.86145 0.96941 0.94564 0.94899 0.97765 0.98283 0.90262 0.91097 0.95112 0.88202 0.86866 0.87482 0.73603 0.87665 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.36 10.38 21.65 0.22 -58.13 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 3 Si 0.95 48.51 29.55 68.60 2.03 50.54 16 4 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 5 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 6 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.21 -11.71 9.70 84.04 0.81 -10.90 16 8 H 0.07 4.14 6.51 -2.91 -0.02 4.13 16 9 N -0.61 -29.75 3.20 -674.19 -2.16 -31.90 16 10 C 0.19 8.95 4.61 86.71 0.40 9.35 16 11 C -0.13 -4.31 6.33 32.15 0.20 -4.10 16 12 C -0.09 -2.41 3.68 -9.38 -0.03 -2.45 16 13 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 14 C -0.11 -3.22 5.04 30.57 0.15 -3.06 16 15 C 0.08 2.09 6.35 86.22 0.55 2.64 16 16 N -0.58 -19.02 2.96 -826.24 -2.45 -21.47 16 17 C 0.60 21.96 7.73 86.92 0.67 22.63 16 18 O -0.55 -23.86 16.53 -3.74 -0.06 -23.92 16 19 C -0.04 -1.34 7.28 44.29 0.32 -1.02 16 20 C 0.04 1.09 12.63 87.31 1.10 2.20 16 21 N -0.36 -8.85 12.22 -61.41 -0.75 -9.60 16 22 O 0.34 8.46 11.65 140.85 1.64 10.10 16 23 N -0.31 -8.46 8.90 -52.08 -0.46 -8.92 16 24 C 0.12 3.99 5.67 85.75 0.49 4.48 16 25 C 0.14 5.12 2.96 44.75 0.13 5.26 16 26 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.24 14.64 8.31 -92.70 -0.77 13.87 16 28 H 0.00 0.23 7.04 -2.38 -0.02 0.21 16 29 H 0.00 -0.06 7.57 -2.39 -0.02 -0.08 16 30 H 0.08 2.34 7.97 -2.39 -0.02 2.32 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.03 1.17 6.85 -2.39 -0.02 1.15 16 33 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.11 2.90 3.94 -20.98 -0.08 2.82 16 35 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.25 4.91 8.06 -2.91 -0.02 4.88 16 37 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.06 2.62 5.57 -2.39 -0.01 2.60 16 Total: -1.00 -72.53 304.86 4.30 -68.22 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 1.02 Total: 3.49 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: 5.27 Total: 21.60 kcal Atomic # 7 Polarization: -124.43 SS G_CDS: -5.59 Total: -130.03 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 1.58 Total: -13.82 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -72.53 4.30 -68.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042275541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.248 kcal (2) G-P(sol) polarization free energy of solvation -72.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds