Wall clock time and date at job start Tue Mar 31 2020 03:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99717 * 2 1 4 4 H 1.48503 * 109.46937 * 274.98291 * 3 2 1 5 5 H 1.48497 * 109.47197 * 34.98535 * 3 2 1 6 6 H 1.48501 * 109.46750 * 154.98808 * 3 2 1 7 7 C 1.38806 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99394 * 185.09013 * 7 2 1 9 9 N 1.36935 * 120.00512 * 5.08772 * 7 2 1 10 10 C 1.47784 * 134.40310 * 173.51128 * 9 7 2 11 11 C 1.52877 * 85.78394 * 156.12681 * 10 9 7 12 12 C 1.47782 * 134.40032 * 353.51398 * 9 7 2 13 13 C 1.53469 * 115.59540 * 140.25089 * 11 10 9 14 14 C 1.54743 * 103.71889 * 152.75864 * 13 11 10 15 15 H 1.09000 * 110.50356 * 119.54690 * 14 13 11 16 16 N 1.46494 * 110.50867 * 242.11232 * 14 13 11 17 17 C 1.34780 * 120.00202 * 204.99845 * 16 14 13 18 18 O 1.21606 * 119.99541 * 0.02562 * 17 16 14 19 19 C 1.47424 * 120.00429 * 180.02562 * 17 16 14 20 20 C 1.41290 * 126.41513 * 0.02562 * 19 17 16 21 21 N 1.30441 * 108.02243 * 179.97438 * 20 19 17 22 22 N 1.39930 * 108.90207 * 359.74725 * 21 20 19 23 23 H 0.97004 * 125.76105 * 180.27419 * 22 21 20 24 24 C 1.34267 * 108.48835 * 0.42627 * 22 21 20 25 25 C 1.54545 * 104.07580 * 0.76638 * 14 13 11 26 26 O 1.43242 * 115.85721 * 265.50393 * 11 10 9 27 27 H 0.96999 * 120.00340 * 0.02562 * 1 2 3 28 28 H 1.08995 * 113.82395 * 41.90881 * 10 9 7 29 29 H 1.09000 * 113.92849 * 270.35513 * 10 9 7 30 30 H 1.08998 * 113.82480 * 89.65536 * 12 9 7 31 31 H 1.08997 * 113.82176 * 318.08541 * 12 9 7 32 32 H 1.09008 * 110.57261 * 34.20680 * 13 11 10 33 33 H 1.08993 * 110.70363 * 271.38087 * 13 11 10 34 34 H 0.97001 * 120.00658 * 25.00587 * 16 14 13 35 35 H 1.08002 * 125.98771 * 359.97438 * 20 19 17 36 36 H 1.07994 * 126.29264 * 179.84316 * 24 22 21 37 37 H 1.08994 * 110.33013 * 95.24995 * 25 14 13 38 38 H 1.08999 * 110.32539 * 217.48003 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0871 -1.2039 0.0835 9 7 1.3296 -2.3858 -0.1041 10 6 1.7316 -3.7998 -0.2552 11 6 0.3729 -4.1344 0.3606 12 6 -0.1002 -2.7592 -0.1111 13 6 -0.3577 -5.3343 -0.2573 14 6 -1.2372 -5.8643 0.9003 15 1 -2.2919 -5.8233 0.6281 16 7 -0.8520 -7.2332 1.2522 17 6 -1.7456 -8.0555 1.8368 18 8 -2.8718 -7.6612 2.0718 19 6 -1.3579 -9.4329 2.1915 20 6 -0.0940 -10.0288 1.9822 21 7 -0.1460 -11.2531 2.4293 22 7 -1.4248 -11.4938 2.9438 23 1 -1.7286 -12.3247 3.3417 24 6 -2.1616 -10.3819 2.7908 25 6 -0.9392 -4.9000 2.0706 26 8 0.3641 -4.3456 1.7773 27 1 -0.4850 0.8400 -0.0004 28 1 2.5795 -4.0854 0.3673 29 1 1.8365 -4.1213 -1.2914 30 1 -0.5490 -2.7648 -1.1044 31 1 -0.6988 -2.2232 0.6254 32 1 0.3556 -6.0947 -0.5756 33 1 -0.9780 -5.0176 -1.0957 34 1 0.0461 -7.5478 1.0646 35 1 0.7646 -9.5538 1.5310 36 1 -3.1922 -10.2522 3.0865 37 1 -1.6874 -4.1084 2.1090 38 1 -0.9151 -5.4456 3.0140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053748379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:59 Heat of formation + Delta-G solvation = 61.310152 kcal Electronic energy + Delta-G solvation = -22955.279520 eV Core-core repulsion = 19415.815913 eV Total energy + Delta-G solvation = -3539.463607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.66224 -40.14713 -38.79614 -36.08615 -34.27989 -32.24349 -32.05330 -30.98055 -29.88314 -27.99484 -25.84191 -24.89110 -23.74965 -22.30843 -21.95988 -20.83005 -20.23527 -18.96642 -18.92126 -16.69624 -16.41369 -16.35675 -15.44745 -15.29161 -15.08964 -14.95008 -14.69153 -14.31241 -14.01492 -13.68383 -13.38246 -13.15719 -12.93356 -12.67569 -11.85300 -11.55031 -11.49179 -11.39963 -11.18093 -11.06955 -10.83917 -10.51381 -10.32963 -10.24422 -9.90129 -9.74551 -9.49307 -9.30075 -9.10934 -8.77442 -8.65366 -6.83181 -5.73047 -3.03898 1.22068 1.85189 2.32004 3.19196 3.32405 3.42994 3.47767 3.50237 4.29326 4.30509 4.47637 4.50497 4.71358 4.85870 4.98969 5.08688 5.22169 5.28043 5.32590 5.42901 5.52881 5.67170 5.88963 5.97740 6.02520 6.06771 6.10519 6.37921 6.51475 6.54604 6.63841 6.68241 6.99861 7.08521 7.23014 7.49975 7.54005 7.71312 8.02023 8.21933 9.08646 9.75044 10.62868 11.44882 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.044715 B = 0.002979 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.040784 B = 9396.888773 C = 9675.639607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.220 4.220 8 H 0.080 0.920 9 N -0.605 5.605 10 C 0.130 3.870 11 C 0.055 3.945 12 C 0.154 3.846 13 C -0.145 4.145 14 C 0.114 3.886 15 H 0.104 0.896 16 N -0.712 5.712 17 C 0.593 3.407 18 O -0.551 6.551 19 C -0.292 4.292 20 C 0.086 3.914 21 N -0.297 5.297 22 N -0.465 5.465 23 H 0.444 0.556 24 C 0.133 3.867 25 C 0.038 3.962 26 O -0.338 6.338 27 H 0.253 0.747 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.400 0.600 35 H 0.192 0.808 36 H 0.192 0.808 37 H 0.069 0.931 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 -22.665 3.160 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.348 4.348 8 H 0.098 0.902 9 N -0.331 5.331 10 C 0.004 3.996 11 C 0.013 3.987 12 C 0.029 3.971 13 C -0.185 4.185 14 C 0.009 3.991 15 H 0.122 0.878 16 N -0.363 5.363 17 C 0.381 3.619 18 O -0.430 6.430 19 C -0.307 4.307 20 C -0.102 4.102 21 N -0.117 5.117 22 N -0.170 5.170 23 H 0.289 0.711 24 C -0.020 4.020 25 C -0.040 4.040 26 O -0.256 6.256 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.235 0.765 35 H 0.209 0.791 36 H 0.209 0.791 37 H 0.088 0.912 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.283 -23.030 3.665 23.710 hybrid contribution 0.084 1.091 -0.211 1.114 sum -4.199 -21.939 3.454 22.603 Atomic orbital electron populations 1.69830 1.05042 1.25307 1.56525 1.24802 0.95680 0.97497 1.02442 0.86119 0.78758 0.83619 0.77423 1.21680 1.21731 1.20563 1.19002 0.90737 0.81931 1.43096 0.90188 1.45824 1.02038 1.00537 1.84720 1.22505 0.93952 0.86527 0.96652 1.23797 0.98663 0.94509 0.81690 1.22550 0.88585 0.87856 0.98124 1.23069 0.98944 0.98657 0.97790 1.22437 1.00741 0.80729 0.95159 0.87817 1.45870 1.15339 1.12879 1.62212 1.17239 0.84473 0.83485 0.76733 1.90783 1.20418 1.76855 1.54938 1.20356 0.95695 0.97123 1.17486 1.24154 0.97600 0.91307 0.97177 1.77175 0.98314 1.18106 1.18150 1.46254 1.09408 1.13473 1.47914 0.71086 1.23077 0.98179 0.85861 0.94884 1.23811 0.87037 0.95352 0.97829 1.89011 1.31621 1.83174 1.21799 0.93681 0.93053 0.93544 0.94495 0.90815 0.90251 0.89212 0.76497 0.79128 0.79102 0.91249 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.72 11.52 55.49 0.64 -27.08 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.52 29.56 -169.99 -5.02 17.49 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.22 -6.32 10.69 -15.06 -0.16 -6.48 16 8 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 9 N -0.61 -15.82 3.70 -183.62 -0.68 -16.50 16 10 C 0.13 2.65 8.47 -3.40 -0.03 2.62 16 11 C 0.05 1.02 1.28 -90.66 -0.12 0.91 16 12 C 0.15 3.64 6.91 -3.40 -0.02 3.62 16 13 C -0.15 -1.99 6.24 -25.57 -0.16 -2.15 16 14 C 0.11 1.53 3.49 -66.20 -0.23 1.30 16 15 H 0.10 1.43 7.55 -51.93 -0.39 1.04 16 16 N -0.71 -7.98 5.07 -53.21 -0.27 -8.25 16 17 C 0.59 7.25 7.81 -12.52 -0.10 7.15 16 18 O -0.55 -8.56 16.55 5.27 0.09 -8.47 16 19 C -0.29 -2.83 6.13 -105.07 -0.64 -3.47 16 20 C 0.09 0.74 11.50 -16.98 -0.20 0.54 16 21 N -0.30 -2.71 12.63 30.86 0.39 -2.32 16 22 N -0.47 -3.02 7.29 30.85 0.22 -2.79 16 23 H 0.44 1.29 8.96 -182.72 -1.64 -0.35 16 24 C 0.13 0.99 11.82 -16.56 -0.20 0.80 16 25 C 0.04 0.61 7.37 37.97 0.28 0.88 16 26 O -0.34 -6.63 11.44 -35.23 -0.40 -7.04 16 27 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.86 7.96 -51.93 -0.41 0.45 16 31 H 0.07 1.96 7.39 -51.93 -0.38 1.58 16 32 H 0.08 0.91 7.69 -51.92 -0.40 0.51 16 33 H 0.09 1.18 7.84 -51.93 -0.41 0.77 16 34 H 0.40 3.56 7.34 -40.82 -0.30 3.26 16 35 H 0.19 1.09 7.50 -52.49 -0.39 0.70 16 36 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.09 1.32 8.06 -51.93 -0.42 0.90 16 LS Contribution 325.22 15.07 4.90 4.90 Total: -1.00 -36.78 325.22 -7.79 -44.56 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.98 Total: 0.13 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -1.67 Total: 5.38 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.30 Total: -56.96 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.32 Total: -15.51 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.78 -7.79 -44.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053748379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.874 kcal (2) G-P(sol) polarization free energy of solvation -36.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds