Wall clock time and date at job start Tue Mar 31 2020 03:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99957 * 2 1 4 4 H 1.48503 * 109.47305 * 270.00277 * 3 2 1 5 5 H 1.48492 * 109.47306 * 30.00278 * 3 2 1 6 6 H 1.48504 * 109.47122 * 150.00416 * 3 2 1 7 7 C 1.38818 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99990 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99829 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00207 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47646 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47147 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99866 * 180.02562 * 12 11 10 14 14 O 1.21590 * 119.99866 * 359.97438 * 13 12 11 15 15 C 1.47535 * 120.00005 * 180.02562 * 13 12 11 16 16 C 1.39804 * 120.97773 * 359.97438 * 15 13 12 17 17 N 1.32197 * 118.97764 * 179.97438 * 16 15 13 18 18 C 1.31933 * 121.13935 * 0.02562 * 17 16 15 19 19 C 1.50706 * 118.90089 * 180.02562 * 18 17 16 20 20 C 1.53000 * 117.49681 * 300.00184 * 19 18 17 21 21 C 1.53002 * 60.02940 * 107.47810 * 20 19 18 22 22 N 1.31725 * 122.19713 * 0.27939 * 18 17 16 23 23 C 1.32768 * 120.87330 * 359.43894 * 22 18 17 24 24 O 1.35280 * 120.61585 * 180.24964 * 23 22 18 25 25 H 0.97004 * 120.00068 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00810 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.46944 * 59.99439 * 10 9 7 28 28 H 1.09005 * 109.46683 * 300.00232 * 10 9 7 29 29 H 1.08994 * 109.46958 * 59.99529 * 11 10 9 30 30 H 1.09004 * 109.46396 * 299.99641 * 11 10 9 31 31 H 0.97001 * 120.00043 * 359.97438 * 12 11 10 32 32 H 1.07992 * 120.51490 * 0.02562 * 16 15 13 33 33 H 1.08999 * 115.54993 * 154.33376 * 19 18 17 34 34 H 1.09002 * 117.49833 * 214.97915 * 20 19 18 35 35 H 1.09002 * 117.49953 * 359.97438 * 20 19 18 36 36 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 37 37 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 38 38 H 0.96697 * 114.00200 * 270.29191 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0638 -4.8197 -0.0035 12 7 1.7963 -6.0884 -0.0029 13 6 1.1224 -7.2556 -0.0049 14 8 -0.0935 -7.2556 -0.0067 15 6 1.8601 -8.5333 -0.0037 16 6 3.2579 -8.5572 -0.0011 17 7 3.8785 -9.7244 0.0004 18 6 3.2018 -10.8570 -0.0010 19 6 3.9607 -12.1590 0.0014 20 6 4.9059 -12.4279 -1.1713 21 6 5.4759 -12.0933 0.2086 22 7 1.8849 -10.8877 -0.0094 23 6 1.1772 -9.7644 -0.0058 24 8 -0.1751 -9.8020 -0.0094 25 1 -0.4850 0.8401 0.0004 26 1 0.3556 -2.3881 -0.0016 27 1 2.6841 -3.7149 0.8888 28 1 2.6854 -3.7141 -0.8912 29 1 0.4382 -4.7613 -0.8941 30 1 0.4362 -4.7625 0.8859 31 1 2.7663 -6.0884 -0.0018 32 1 3.8221 -7.6363 0.0006 33 1 3.4305 -13.0114 0.4262 34 1 4.9978 -13.4573 -1.5178 35 1 4.9784 -11.6633 -1.9448 36 1 5.9430 -12.9025 0.7699 37 1 5.9232 -11.1085 0.3430 38 1 -0.5659 -9.8131 -0.8938 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134890606.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:55 Heat of formation + Delta-G solvation = -10.352646 kcal Electronic energy + Delta-G solvation = -21956.591138 eV Core-core repulsion = 18414.019998 eV Total energy + Delta-G solvation = -3542.571139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.63141 -40.59949 -39.04646 -37.67864 -37.29522 -35.60100 -34.63154 -33.34982 -32.48307 -29.48723 -27.06325 -25.65902 -25.33233 -23.23282 -23.21065 -22.81871 -21.85400 -19.89455 -19.49476 -19.20363 -18.77070 -17.63124 -17.00234 -16.77163 -16.46464 -16.25517 -15.85597 -15.64234 -15.30392 -15.17089 -14.99426 -14.86243 -14.67649 -13.44973 -13.22501 -13.12001 -13.03692 -12.67507 -12.56331 -12.52138 -12.30401 -12.07799 -12.06096 -11.85835 -11.67716 -11.41705 -11.06205 -10.98447 -10.62112 -10.49035 -10.17158 -9.05602 -7.96248 -5.27353 -0.86822 -0.28653 1.49399 1.51508 1.59540 1.59876 1.80268 2.08575 2.37943 2.57790 2.62153 3.00827 3.12756 3.38363 3.45021 3.62653 3.77614 3.86870 4.00484 4.08618 4.16024 4.22517 4.28732 4.37399 4.59399 4.82580 4.87734 4.99124 5.01448 5.14136 5.18137 5.27331 5.34425 5.49933 5.59364 6.24635 6.32828 6.36935 6.76473 7.02635 7.31101 8.03322 8.25399 9.27365 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.028389 B = 0.002562 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.066815 B =10924.508750 C =11816.963296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.265 1.265 7 C -0.246 4.246 8 H 0.085 0.915 9 N -0.748 5.748 10 C 0.147 3.853 11 C 0.129 3.871 12 N -0.701 5.701 13 C 0.569 3.431 14 O -0.558 6.558 15 C -0.276 4.276 16 C 0.217 3.783 17 N -0.528 5.528 18 C 0.389 3.611 19 C -0.132 4.132 20 C -0.141 4.141 21 C -0.139 4.139 22 N -0.556 5.556 23 C 0.415 3.585 24 O -0.469 6.469 25 H 0.252 0.748 26 H 0.374 0.626 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.416 0.584 32 H 0.213 0.787 33 H 0.139 0.861 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.444 -26.874 -2.243 29.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.377 4.377 8 H 0.102 0.898 9 N -0.391 5.391 10 C 0.020 3.980 11 C 0.005 3.995 12 N -0.354 5.354 13 C 0.355 3.645 14 O -0.437 6.437 15 C -0.286 4.286 16 C 0.050 3.950 17 N -0.243 5.243 18 C 0.124 3.876 19 C -0.152 4.152 20 C -0.179 4.179 21 C -0.177 4.177 22 N -0.282 5.282 23 C 0.227 3.773 24 O -0.280 6.280 25 H 0.060 0.940 26 H 0.206 0.794 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.254 0.746 32 H 0.229 0.771 33 H 0.157 0.843 34 H 0.144 0.856 35 H 0.110 0.890 36 H 0.142 0.858 37 H 0.123 0.877 38 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 12.172 -27.572 -1.662 30.185 hybrid contribution -0.944 1.952 -0.370 2.200 sum 11.228 -25.620 -2.033 28.046 Atomic orbital electron populations 1.69836 1.06820 1.26243 1.59229 1.25669 0.96426 1.01469 1.03484 0.85073 0.77728 0.79062 0.77462 1.21310 1.22485 1.18990 1.19647 0.91765 0.84797 1.41519 0.89762 1.42424 1.05799 1.01104 1.89784 1.20877 0.93578 0.83919 0.99581 1.21213 0.94828 0.81877 1.01613 1.45525 1.11104 1.04430 1.74365 1.17778 0.86779 0.83390 0.76552 1.90827 1.14585 1.87640 1.50643 1.21821 0.97164 0.94466 1.15120 1.24018 0.89083 0.97938 0.83986 1.68266 1.40802 0.98231 1.17034 1.22764 0.84990 0.94342 0.85498 1.20940 0.92996 0.92072 1.09177 1.23113 0.99200 1.04216 0.91373 1.23165 0.90645 1.04854 0.99021 1.67888 1.09734 1.31613 1.18932 1.19619 0.85552 0.86615 0.85520 1.84601 1.12488 1.95217 1.35664 0.93956 0.79438 0.94244 0.94024 0.92170 0.92565 0.74606 0.77058 0.84346 0.85594 0.89029 0.85843 0.87683 0.70713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.29 13.06 21.65 0.28 -59.01 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 3 Si 0.98 45.13 29.55 68.60 2.03 47.16 16 4 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.25 -13.27 9.99 84.04 0.84 -12.43 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.75 -36.86 5.60 -343.45 -1.92 -38.79 16 10 C 0.15 5.26 6.37 86.38 0.55 5.81 16 11 C 0.13 4.12 5.79 86.38 0.50 4.62 16 12 N -0.70 -16.76 5.51 -466.28 -2.57 -19.33 16 13 C 0.57 15.48 7.78 86.70 0.67 16.15 16 14 O -0.56 -19.74 15.32 16.22 0.25 -19.50 16 15 C -0.28 -6.15 5.92 -19.83 -0.12 -6.27 16 16 C 0.22 3.58 10.81 85.02 0.92 4.50 16 17 N -0.53 -9.52 9.31 -186.93 -1.74 -11.26 16 18 C 0.39 7.60 7.31 138.73 1.01 8.62 16 19 C -0.13 -1.77 6.23 -11.51 -0.07 -1.84 16 20 C -0.14 -1.30 10.23 30.60 0.31 -0.99 16 21 C -0.14 -1.30 10.01 30.62 0.31 -1.00 16 22 N -0.56 -12.91 10.34 -299.85 -3.10 -16.01 16 23 C 0.42 10.11 7.85 85.17 0.67 10.78 16 24 O -0.47 -11.55 11.81 -65.43 -0.77 -12.33 16 25 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 26 H 0.37 20.05 7.67 -92.71 -0.71 19.33 16 27 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.42 6.68 6.60 -92.71 -0.61 6.07 16 32 H 0.21 1.81 6.53 -2.91 -0.02 1.79 16 33 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.10 1.19 7.53 -2.39 -0.02 1.17 16 38 H 0.43 6.85 9.06 -74.06 -0.67 6.18 16 Total: -1.00 -75.40 334.27 -2.34 -77.75 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -0.86 Total: 27.31 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 6.06 Total: 23.99 kcal Atomic # 7 Polarization: -135.34 SS G_CDS: -9.05 Total: -144.39 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.52 Total: -31.82 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -75.40 -2.34 -77.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134890606.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.394 kcal (2) G-P(sol) polarization free energy of solvation -75.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds