Wall clock time and date at job start Tue Mar 31 2020 03:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99793 * 2 1 4 4 H 1.48499 * 109.47485 * 270.00303 * 3 2 1 5 5 H 1.48497 * 109.47412 * 30.00799 * 3 2 1 6 6 H 1.48498 * 109.47200 * 150.00518 * 3 2 1 7 7 C 1.37879 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99736 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99709 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46945 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47490 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99275 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00224 * 179.97438 * 11 10 9 14 14 C 1.47040 * 120.83492 * 359.97438 * 13 11 10 15 15 C 1.53414 * 109.31067 * 115.71727 * 14 13 11 16 16 C 1.50677 * 108.77116 * 45.38173 * 15 14 13 17 17 N 1.34414 * 128.66414 * 162.14164 * 16 15 14 18 18 H 0.96996 * 124.95974 * 359.70561 * 17 16 15 19 19 N 1.28833 * 110.08843 * 179.74531 * 17 16 15 20 20 C 1.32224 * 110.15130 * 0.11193 * 19 17 16 21 21 C 1.47712 * 126.69906 * 180.02562 * 20 19 17 22 22 N 1.34774 * 120.00005 * 359.97438 * 21 20 19 23 23 O 1.21576 * 119.99680 * 179.97438 * 21 20 19 24 24 C 1.35590 * 124.26819 * 342.09694 * 16 15 14 25 25 C 1.47536 * 120.83186 * 179.97438 * 13 11 10 26 26 H 0.96997 * 119.99641 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47375 * 60.00140 * 9 7 2 28 28 H 1.08999 * 109.47458 * 299.99726 * 9 7 2 29 29 H 1.09001 * 109.47434 * 60.00410 * 10 9 7 30 30 H 1.09005 * 109.47266 * 299.99579 * 10 9 7 31 31 H 1.09004 * 109.50043 * 235.66795 * 14 13 11 32 32 H 1.09002 * 109.49872 * 355.76743 * 14 13 11 33 33 H 1.08999 * 109.58913 * 165.17099 * 15 14 13 34 34 H 1.09004 * 109.58698 * 285.59481 * 15 14 13 35 35 H 0.96994 * 120.00153 * 359.97438 * 22 21 20 36 36 H 0.97004 * 119.99848 * 179.97438 * 22 21 20 37 37 H 1.09002 * 109.92673 * 343.29117 * 25 13 11 38 38 H 1.09003 * 109.92516 * 104.48215 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5286 -2.6365 -0.0022 12 8 6.1350 -1.5861 -0.0018 13 7 6.2025 -3.8037 -0.0026 14 6 5.4859 -5.0876 -0.0026 15 6 5.7868 -5.8366 -1.3072 16 6 7.2673 -5.7635 -1.5779 17 7 8.0096 -6.5264 -2.3987 18 1 7.6681 -7.2549 -2.9405 19 7 9.2409 -6.1495 -2.3601 20 6 9.3807 -5.1348 -1.5239 21 6 10.6337 -4.4214 -1.2032 22 7 11.7896 -4.7933 -1.7881 23 8 10.6223 -3.4988 -0.4115 24 6 8.1056 -4.8679 -1.0004 25 6 7.6777 -3.8251 -0.0032 26 1 -0.4849 0.8400 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8746 -0.6800 -0.8911 29 1 3.6580 -3.1497 -0.8925 30 1 3.6587 -3.1509 0.8876 31 1 5.8149 -5.6879 0.8457 32 1 4.4138 -4.9060 0.0737 33 1 5.4845 -6.8792 -1.2082 34 1 5.2417 -5.3724 -2.1291 35 1 11.7987 -5.5296 -2.4194 36 1 12.6124 -4.3246 -1.5777 37 1 8.0633 -2.8491 -0.2978 38 1 8.0457 -4.0869 0.9889 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271768688.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:24 Heat of formation + Delta-G solvation = -2.754930 kcal Electronic energy + Delta-G solvation = -23019.123774 eV Core-core repulsion = 19476.882096 eV Total energy + Delta-G solvation = -3542.241678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.16792 -39.54964 -39.27286 -36.52458 -33.97260 -33.57428 -32.87442 -31.98403 -31.16303 -29.97121 -26.88932 -25.05061 -24.59007 -23.85388 -21.43954 -20.38690 -19.96848 -18.77689 -17.97271 -17.52740 -17.01240 -16.63855 -16.31958 -15.85486 -15.60086 -15.37472 -14.61504 -14.39088 -14.09524 -14.01350 -13.58299 -13.36931 -13.23378 -12.70481 -12.53667 -12.23870 -11.87889 -11.71326 -11.33146 -11.21605 -10.94311 -10.50272 -10.10843 -10.01893 -9.96934 -9.75594 -9.68633 -9.21293 -9.12812 -8.96678 -8.58601 -8.48486 -6.01904 -4.00503 1.22664 1.75660 2.42996 3.06920 3.14506 3.16959 3.24335 3.40588 3.47255 3.59342 4.14117 4.25366 4.53270 4.56434 4.72243 4.94068 5.10903 5.12796 5.27093 5.34089 5.43176 5.51590 5.58746 5.77093 5.87584 6.03963 6.08625 6.15473 6.45673 6.57330 6.62330 6.71391 7.01369 7.39261 7.46045 7.49563 7.63658 7.80986 8.00163 8.50268 8.64019 9.00763 9.61661 11.10820 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.025189 B = 0.003575 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.308115 B = 7829.578360 C = 8609.101268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.000 4.000 10 C -0.120 4.120 11 C 0.514 3.486 12 O -0.532 6.532 13 N -0.627 5.627 14 C 0.113 3.887 15 C -0.068 4.068 16 C 0.025 3.975 17 N -0.370 5.370 18 H 0.446 0.554 19 N -0.263 5.263 20 C -0.004 4.004 21 C 0.608 3.392 22 N -0.844 5.844 23 O -0.524 6.524 24 C -0.156 4.156 25 C 0.191 3.809 26 H 0.263 0.737 27 H 0.025 0.975 28 H 0.019 0.981 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.406 0.594 36 H 0.406 0.594 37 H 0.109 0.891 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.695 -19.465 -4.999 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.184 1.184 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.038 4.038 10 C -0.160 4.160 11 C 0.305 3.695 12 O -0.407 6.407 13 N -0.363 5.363 14 C -0.011 4.011 15 C -0.108 4.108 16 C -0.102 4.102 17 N -0.083 5.083 18 H 0.291 0.709 19 N -0.100 5.100 20 C -0.164 4.164 21 C 0.391 3.609 22 N -0.408 5.408 23 O -0.397 6.397 24 C -0.167 4.167 25 C 0.068 3.932 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.037 0.963 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.235 0.765 36 H 0.237 0.763 37 H 0.127 0.873 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 19.300 -18.800 -5.144 27.429 hybrid contribution 0.148 0.495 -0.263 0.580 sum 19.448 -18.305 -5.407 27.249 Atomic orbital electron populations 1.69911 1.06296 1.26972 1.51145 1.24965 0.94699 0.99243 0.94306 0.86809 0.80705 0.83380 0.78776 1.20264 1.21455 1.18419 1.21097 0.89241 0.94516 1.51324 0.90941 1.19388 0.96386 0.90226 0.97777 1.21696 0.87883 1.03302 1.03083 1.21562 0.91522 0.82202 0.74258 1.90673 1.70649 1.30876 1.48486 1.48446 1.05966 1.06213 1.75688 1.21663 0.99048 0.84624 0.95769 1.20717 0.87338 1.02331 1.00442 1.21088 0.96254 0.95598 0.97308 1.42993 1.04499 1.27418 1.33416 0.70913 1.73746 1.00814 1.14779 1.20669 1.21366 0.95021 0.98684 1.01320 1.16848 0.82004 0.82014 0.80049 1.43626 1.09914 1.39057 1.48182 1.90895 1.85726 1.28644 1.34477 1.20178 0.91517 1.01202 1.03829 1.19817 0.79478 0.97959 0.95934 0.92736 0.95708 0.96270 0.89680 0.89487 0.90624 0.87522 0.88889 0.88833 0.76481 0.76272 0.87335 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.75 27.47 -169.99 -4.67 18.08 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 7 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C 0.00 0.00 3.33 -27.89 -0.09 -0.09 16 10 C -0.12 -2.28 3.99 -27.88 -0.11 -2.39 16 11 C 0.51 9.69 7.71 -10.99 -0.08 9.60 16 12 O -0.53 -12.36 15.50 5.55 0.09 -12.27 16 13 N -0.63 -9.09 2.95 -173.63 -0.51 -9.60 16 14 C 0.11 1.10 6.28 -3.53 -0.02 1.08 16 15 C -0.07 -0.51 6.46 -27.68 -0.18 -0.69 16 16 C 0.02 0.24 7.15 -82.42 -0.59 -0.35 16 17 N -0.37 -2.88 6.82 33.43 0.23 -2.65 16 18 H 0.45 1.69 8.96 -190.22 -1.71 -0.02 16 19 N -0.26 -2.59 11.96 33.26 0.40 -2.20 16 20 C 0.00 -0.05 7.12 -83.02 -0.59 -0.64 16 21 C 0.61 7.46 8.10 -12.39 -0.10 7.36 16 22 N -0.84 -6.47 8.87 30.50 0.27 -6.20 16 23 O -0.52 -8.35 16.84 5.30 0.09 -8.26 16 24 C -0.16 -2.00 6.08 -104.85 -0.64 -2.63 16 25 C 0.19 2.82 5.89 -4.72 -0.03 2.80 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 27 H 0.02 0.65 7.16 -51.93 -0.37 0.28 16 28 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 29 H 0.08 1.45 7.91 -51.93 -0.41 1.04 16 30 H 0.09 1.50 7.74 -51.93 -0.40 1.10 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.11 0.97 5.94 -51.93 -0.31 0.66 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.41 2.28 8.57 -40.82 -0.35 1.93 16 36 H 0.41 2.39 8.93 -40.82 -0.36 2.03 16 37 H 0.11 1.94 7.02 -51.93 -0.36 1.57 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 320.99 15.07 4.84 4.84 Total: -1.00 -38.48 320.99 -7.31 -45.79 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.94 Total: -1.17 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.87 Total: 0.81 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 1.16 Total: -47.81 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: 0.18 Total: -20.53 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.67 Total: 18.08 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -38.48 -7.31 -45.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271768688.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.032 kcal (2) G-P(sol) polarization free energy of solvation -38.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds