Wall clock time and date at job start Tue Mar 31 2020 03:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00469 * 2 1 4 4 H 1.48499 * 109.47125 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47553 * 119.99865 * 3 2 1 6 6 H 1.48510 * 109.46989 * 239.99988 * 3 2 1 7 7 C 1.37882 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00161 * 181.67652 * 7 2 1 9 9 C 1.50699 * 120.00104 * 1.67535 * 7 2 1 10 10 O 1.42902 * 112.94289 * 299.41396 * 9 7 2 11 11 C 1.53941 * 113.74637 * 167.81701 * 9 7 2 12 12 N 1.47806 * 86.03741 * 222.08673 * 11 9 7 13 13 C 1.34783 * 134.45623 * 204.63968 * 12 11 9 14 14 O 1.21273 * 120.00115 * 184.67233 * 13 12 11 15 15 C 1.50700 * 119.99725 * 4.67523 * 13 12 11 16 16 H 1.09004 * 109.69145 * 334.16403 * 15 13 12 17 17 C 1.53436 * 109.69441 * 94.70571 * 15 13 12 18 18 C 1.53103 * 109.55605 * 169.43411 * 17 15 13 19 19 C 1.53424 * 109.58133 * 289.94758 * 18 17 15 20 20 C 1.50600 * 108.33677 * 49.82351 * 19 18 17 21 21 N 1.32902 * 129.16823 * 163.48083 * 20 19 18 22 22 N 1.29018 * 108.63763 * 180.10158 * 21 20 19 23 23 N 1.29102 * 110.26053 * 359.97245 * 22 21 20 24 24 H 0.97004 * 126.01279 * 179.97438 * 23 22 21 25 25 C 1.34345 * 108.00338 * 359.96534 * 23 22 21 26 26 C 1.47578 * 91.05356 * 24.55004 * 12 11 9 27 27 H 0.96998 * 120.00350 * 174.75664 * 1 2 3 28 28 H 0.96698 * 113.99769 * 304.43995 * 10 9 7 29 29 H 1.09007 * 113.76506 * 336.35208 * 11 9 7 30 30 H 1.08996 * 113.77319 * 107.74441 * 11 9 7 31 31 H 1.08997 * 109.45695 * 289.46284 * 17 15 13 32 32 H 1.09004 * 109.45602 * 49.40657 * 17 15 13 33 33 H 1.08998 * 109.45088 * 49.98025 * 18 17 15 34 34 H 1.09001 * 109.45486 * 169.93831 * 18 17 15 35 35 H 1.08995 * 109.69112 * 169.53851 * 19 18 17 36 36 H 1.09007 * 109.69099 * 290.07903 * 19 18 17 37 37 H 1.09005 * 113.76944 * 221.15515 * 26 12 11 38 38 H 1.08997 * 113.87387 * 89.77005 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1030 1.6962 -1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0840 -1.1944 0.0279 9 6 1.2514 -2.4989 -0.0370 10 8 0.3844 -2.6743 1.0853 11 6 2.1417 -3.7203 -0.3293 12 7 1.0507 -4.1744 -1.2170 13 6 0.6480 -5.3745 -1.6799 14 8 -0.2574 -5.4416 -2.4840 15 6 1.3227 -6.6329 -1.1981 16 1 2.3397 -6.4052 -0.8787 17 6 0.5328 -7.2263 -0.0242 18 6 1.0600 -8.6286 0.2917 19 6 0.6714 -9.5906 -0.8385 20 6 1.0633 -8.9634 -2.1504 21 7 1.1962 -9.5300 -3.3452 22 7 1.5503 -8.6249 -4.1937 23 7 1.6567 -7.4796 -3.6074 24 1 1.9097 -6.6439 -4.0299 25 6 1.3553 -7.6482 -2.3091 26 6 0.5782 -2.7872 -1.3912 27 1 -0.4850 -0.8365 -0.0768 28 1 0.8290 -2.6012 1.9409 29 1 3.0639 -3.4756 -0.8564 30 1 2.3026 -4.3638 0.5356 31 1 0.6503 -6.5884 0.8518 32 1 -0.5226 -7.2865 -0.2902 33 1 2.1456 -8.5960 0.3834 34 1 0.6267 -8.9767 1.2293 35 1 1.1971 -10.5370 -0.7122 36 1 -0.4048 -9.7631 -0.8202 37 1 -0.5071 -2.6871 -1.3724 38 1 1.0388 -2.2664 -2.2306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334391499.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:08 Heat of formation + Delta-G solvation = 32.204509 kcal Electronic energy + Delta-G solvation = -23821.695485 eV Core-core repulsion = 20280.969762 eV Total energy + Delta-G solvation = -3540.725723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.51999 -40.01687 -38.12799 -36.70644 -34.30245 -33.83116 -32.54109 -30.86248 -30.28291 -28.44156 -25.93194 -25.02501 -24.29536 -23.11731 -22.75788 -20.69277 -19.74885 -18.92064 -18.12292 -17.72965 -16.96823 -16.10545 -15.57690 -15.30871 -15.11594 -14.83295 -14.20784 -13.96631 -13.91832 -13.86976 -13.32418 -13.05639 -12.83844 -12.41162 -12.12295 -11.87811 -11.62621 -11.54855 -11.45150 -11.40566 -11.22415 -10.95344 -10.71978 -10.42626 -10.39730 -10.25990 -9.72856 -9.39785 -8.97466 -8.73197 -8.60182 -8.11251 -6.60457 -4.50003 1.48988 2.44318 2.64509 2.72567 3.13696 3.28680 3.30095 3.49003 4.06934 4.30775 4.38002 4.44570 4.61481 4.72149 4.91918 5.00245 5.04607 5.11909 5.14024 5.25889 5.43524 5.46200 5.63549 5.70859 5.79897 5.83645 5.85814 5.91170 6.04685 6.07566 6.12875 6.35188 6.35764 6.76004 6.78505 7.56110 8.03644 8.07381 8.33216 8.39764 8.54919 8.75539 9.34605 10.77444 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031387 B = 0.003930 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.865524 B = 7122.989452 C = 7520.946685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.039 3.961 3 Si 1.067 2.933 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.642 4.642 8 H 0.061 0.939 9 C 0.220 3.780 10 O -0.559 6.559 11 C 0.071 3.929 12 N -0.629 5.629 13 C 0.526 3.474 14 O -0.551 6.551 15 C -0.028 4.028 16 H 0.106 0.894 17 C -0.103 4.103 18 C -0.116 4.116 19 C -0.033 4.033 20 C -0.015 4.015 21 N -0.261 5.261 22 N -0.090 5.090 23 N -0.370 5.370 24 H 0.448 0.552 25 C 0.015 3.985 26 C 0.123 3.877 27 H 0.284 0.716 28 H 0.367 0.633 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.810 -12.269 2.255 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.171 4.171 3 Si 0.894 3.106 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.679 4.679 8 H 0.079 0.921 9 C 0.179 3.821 10 O -0.364 6.364 11 C -0.052 4.052 12 N -0.362 5.362 13 C 0.313 3.687 14 O -0.430 6.430 15 C -0.052 4.052 16 H 0.124 0.876 17 C -0.142 4.142 18 C -0.154 4.154 19 C -0.072 4.072 20 C -0.155 4.155 21 N -0.127 5.127 22 N -0.069 5.069 23 N -0.088 5.088 24 H 0.294 0.706 25 C -0.122 4.122 26 C 0.002 3.998 27 H 0.096 0.904 28 H 0.214 0.786 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.687 -11.846 0.010 12.740 hybrid contribution 0.821 -0.350 0.822 1.213 sum 5.508 -12.197 0.832 13.408 Atomic orbital electron populations 1.70675 1.06911 1.32638 1.41258 1.25856 0.96379 1.02595 0.92265 0.83574 0.75008 0.75260 0.76737 1.20599 1.21211 1.21221 1.22111 0.94419 0.90799 1.60620 0.92126 1.20187 0.86134 0.91392 0.84345 1.86358 1.39387 1.94607 1.16080 1.24254 0.92132 0.96688 0.92143 1.50328 1.32265 1.05720 1.47878 1.19956 0.84094 0.83505 0.81117 1.90709 1.31318 1.86566 1.34422 1.19885 1.02032 0.90449 0.92822 0.87561 1.21539 1.00243 0.96585 0.95808 1.21647 1.01750 0.93810 0.98218 1.19990 1.02028 0.98251 0.86977 1.21649 1.06838 0.90825 0.96215 1.74773 1.15026 1.23768 0.99116 1.78523 1.20203 0.87422 1.20736 1.44605 1.45374 1.11734 1.07047 0.70647 1.21272 1.07165 0.97257 0.86475 1.23581 1.00540 0.76610 0.99074 0.90358 0.78602 0.89435 0.91217 0.89600 0.90326 0.91108 0.89904 0.89599 0.89721 0.91107 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.13 13.51 55.43 0.75 -23.38 16 2 C 0.04 0.99 5.41 -17.82 -0.10 0.89 16 3 Si 1.07 22.21 29.90 -169.99 -5.08 17.13 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.29 -5.68 7.11 56.52 0.40 -5.27 16 6 H -0.29 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.64 -15.14 8.56 -34.44 -0.29 -15.43 16 8 H 0.06 1.39 7.81 -52.49 -0.41 0.98 16 9 C 0.22 4.64 0.93 -90.85 -0.08 4.56 16 10 O -0.56 -12.03 12.41 -35.23 -0.44 -12.47 16 11 C 0.07 1.18 7.70 -2.84 -0.02 1.16 16 12 N -0.63 -11.45 3.61 -178.14 -0.64 -12.10 16 13 C 0.53 9.21 7.02 -10.98 -0.08 9.13 16 14 O -0.55 -11.69 17.13 5.56 0.10 -11.59 16 15 C -0.03 -0.37 2.78 -92.78 -0.26 -0.63 16 16 H 0.11 1.19 7.70 -51.93 -0.40 0.79 16 17 C -0.10 -1.17 5.21 -26.45 -0.14 -1.31 16 18 C -0.12 -0.99 5.90 -26.46 -0.16 -1.15 16 19 C -0.03 -0.34 6.30 -27.71 -0.17 -0.51 16 20 C -0.01 -0.21 7.11 -83.10 -0.59 -0.80 16 21 N -0.26 -4.21 12.40 33.17 0.41 -3.80 16 22 N -0.09 -1.43 13.40 60.35 0.81 -0.63 16 23 N -0.37 -5.27 6.87 33.39 0.23 -5.04 16 24 H 0.45 5.43 8.96 -190.07 -1.70 3.72 16 25 C 0.02 0.21 5.97 -82.50 -0.49 -0.28 16 26 C 0.12 2.63 7.46 -2.97 -0.02 2.61 16 27 H 0.28 7.90 5.88 -40.82 -0.24 7.66 16 28 H 0.37 6.73 9.09 45.56 0.41 7.15 16 29 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 33 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.65 7.90 -51.93 -0.41 1.24 16 38 H 0.09 1.93 8.09 -51.93 -0.42 1.51 16 LS Contribution 321.36 15.07 4.84 4.84 Total: -1.00 -31.59 321.36 -6.78 -38.37 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -5.34 Total: 10.42 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.41 Total: -1.76 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 1.55 Total: -44.94 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.34 Total: -24.06 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.08 Total: 17.13 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.59 -6.78 -38.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334391499.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.571 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds