Wall clock time and date at job start Tue Mar 31 2020 03:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00469 * 2 1 4 4 H 1.48499 * 109.47125 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47553 * 119.99865 * 3 2 1 6 6 H 1.48510 * 109.46989 * 239.99988 * 3 2 1 7 7 C 1.37882 * 119.99718 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00161 * 181.67652 * 7 2 1 9 9 C 1.50699 * 120.00104 * 1.67535 * 7 2 1 10 10 O 1.42902 * 112.94289 * 299.41396 * 9 7 2 11 11 C 1.53941 * 113.74637 * 167.81701 * 9 7 2 12 12 N 1.47806 * 86.03741 * 222.08673 * 11 9 7 13 13 C 1.34783 * 134.45623 * 204.63968 * 12 11 9 14 14 O 1.21273 * 120.00115 * 184.67233 * 13 12 11 15 15 C 1.50700 * 119.99725 * 4.67523 * 13 12 11 16 16 H 1.09004 * 109.69145 * 334.16403 * 15 13 12 17 17 C 1.53436 * 109.69441 * 94.70571 * 15 13 12 18 18 C 1.53103 * 109.55605 * 169.43411 * 17 15 13 19 19 C 1.53424 * 109.58133 * 289.94758 * 18 17 15 20 20 C 1.50600 * 108.33677 * 49.82351 * 19 18 17 21 21 N 1.32902 * 129.16823 * 163.48083 * 20 19 18 22 22 N 1.29018 * 108.63763 * 180.10158 * 21 20 19 23 23 N 1.29102 * 110.26053 * 359.97245 * 22 21 20 24 24 H 0.97004 * 126.01279 * 179.97438 * 23 22 21 25 25 C 1.34345 * 108.00338 * 359.96534 * 23 22 21 26 26 C 1.47578 * 91.05356 * 24.55004 * 12 11 9 27 27 H 0.96998 * 120.00350 * 174.75664 * 1 2 3 28 28 H 0.96698 * 113.99769 * 304.43995 * 10 9 7 29 29 H 1.09007 * 113.76506 * 336.35208 * 11 9 7 30 30 H 1.08996 * 113.77319 * 107.74441 * 11 9 7 31 31 H 1.08997 * 109.45695 * 289.46284 * 17 15 13 32 32 H 1.09004 * 109.45602 * 49.40657 * 17 15 13 33 33 H 1.08998 * 109.45088 * 49.98025 * 18 17 15 34 34 H 1.09001 * 109.45486 * 169.93831 * 18 17 15 35 35 H 1.08995 * 109.69112 * 169.53851 * 19 18 17 36 36 H 1.09007 * 109.69099 * 290.07903 * 19 18 17 37 37 H 1.09005 * 113.76944 * 221.15515 * 26 12 11 38 38 H 1.08997 * 113.87387 * 89.77005 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1030 1.6962 -1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0840 -1.1944 0.0279 9 6 1.2514 -2.4989 -0.0370 10 8 0.3844 -2.6743 1.0853 11 6 2.1417 -3.7203 -0.3293 12 7 1.0507 -4.1744 -1.2170 13 6 0.6480 -5.3745 -1.6799 14 8 -0.2574 -5.4416 -2.4840 15 6 1.3227 -6.6329 -1.1981 16 1 2.3397 -6.4052 -0.8787 17 6 0.5328 -7.2263 -0.0242 18 6 1.0600 -8.6286 0.2917 19 6 0.6714 -9.5906 -0.8385 20 6 1.0633 -8.9634 -2.1504 21 7 1.1962 -9.5300 -3.3452 22 7 1.5503 -8.6249 -4.1937 23 7 1.6567 -7.4796 -3.6074 24 1 1.9097 -6.6439 -4.0299 25 6 1.3553 -7.6482 -2.3091 26 6 0.5782 -2.7872 -1.3912 27 1 -0.4850 -0.8365 -0.0768 28 1 0.8290 -2.6012 1.9409 29 1 3.0639 -3.4756 -0.8564 30 1 2.3026 -4.3638 0.5356 31 1 0.6503 -6.5884 0.8518 32 1 -0.5226 -7.2865 -0.2902 33 1 2.1456 -8.5960 0.3834 34 1 0.6267 -8.9767 1.2293 35 1 1.1971 -10.5370 -0.7122 36 1 -0.4048 -9.7631 -0.8202 37 1 -0.5071 -2.6871 -1.3724 38 1 1.0388 -2.2664 -2.2306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334391499.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:08 Heat of formation + Delta-G solvation = 7.155760 kcal Electronic energy + Delta-G solvation = -23822.781680 eV Core-core repulsion = 20280.969762 eV Total energy + Delta-G solvation = -3541.811918 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.62308 -41.48476 -39.56564 -37.75854 -35.94750 -34.95762 -34.39586 -31.94905 -31.29466 -29.90519 -27.45339 -26.65449 -25.46016 -24.25525 -23.72869 -22.25071 -20.72940 -20.28537 -19.70098 -19.02526 -18.35084 -17.45169 -16.99028 -16.67568 -16.57921 -15.91428 -15.60245 -15.30419 -14.98487 -14.82010 -14.70585 -14.60293 -14.26421 -13.81622 -13.56658 -13.27648 -12.96914 -12.76619 -12.57087 -12.52941 -12.42091 -12.14789 -12.02678 -11.92307 -11.69269 -11.43231 -11.14187 -11.03391 -10.58735 -10.26969 -10.00404 -9.70342 -8.54820 -6.44355 0.37209 1.31783 1.34168 1.61553 1.63921 1.66152 1.74437 1.85075 2.60535 3.02278 3.18165 3.20253 3.41860 3.51146 3.68022 3.84734 3.90663 4.02451 4.16995 4.24083 4.33127 4.38916 4.44516 4.56011 4.60909 4.67883 4.74232 4.86937 4.91315 5.05313 5.13338 5.16530 5.26278 5.36725 5.71236 5.78993 6.16082 6.55653 6.67957 6.89920 7.18235 7.26955 7.49218 8.81084 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031387 B = 0.003930 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.865524 B = 7122.989452 C = 7520.946685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 1.109 2.891 4 H -0.296 1.296 5 H -0.266 1.266 6 H -0.271 1.271 7 C -0.638 4.638 8 H 0.070 0.930 9 C 0.205 3.795 10 O -0.573 6.573 11 C 0.090 3.910 12 N -0.626 5.626 13 C 0.524 3.476 14 O -0.595 6.595 15 C -0.015 4.015 16 H 0.138 0.862 17 C -0.104 4.104 18 C -0.105 4.105 19 C -0.037 4.037 20 C -0.016 4.016 21 N -0.287 5.287 22 N -0.113 5.113 23 N -0.366 5.366 24 H 0.454 0.546 25 C 0.005 3.995 26 C 0.117 3.883 27 H 0.269 0.731 28 H 0.380 0.620 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.036 0.964 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.145 -13.515 4.059 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.932 3.068 4 H -0.222 1.222 5 H -0.191 1.191 6 H -0.196 1.196 7 C -0.676 4.676 8 H 0.088 0.912 9 C 0.164 3.836 10 O -0.380 6.380 11 C -0.031 4.031 12 N -0.358 5.358 13 C 0.314 3.686 14 O -0.477 6.477 15 C -0.039 4.039 16 H 0.156 0.844 17 C -0.142 4.142 18 C -0.142 4.142 19 C -0.075 4.075 20 C -0.157 4.157 21 N -0.152 5.152 22 N -0.091 5.091 23 N -0.085 5.085 24 H 0.300 0.700 25 C -0.132 4.132 26 C -0.007 4.007 27 H 0.080 0.920 28 H 0.228 0.772 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.055 0.945 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.070 -13.120 1.824 15.015 hybrid contribution 0.060 0.028 0.242 0.251 sum 7.130 -13.092 2.066 15.050 Atomic orbital electron populations 1.70797 1.08233 1.31741 1.44858 1.27070 0.96258 1.06133 0.91695 0.83019 0.74109 0.71604 0.78045 1.22246 1.19128 1.19633 1.22495 0.95024 0.91733 1.58302 0.91171 1.20258 0.86894 0.92646 0.83788 1.86329 1.40172 1.94643 1.16901 1.24192 0.91212 0.94693 0.92999 1.50282 1.32544 1.04819 1.48204 1.20758 0.83420 0.84298 0.80103 1.90691 1.33386 1.87187 1.36439 1.19966 1.03369 0.87567 0.92959 0.84428 1.21625 0.98774 0.98706 0.95099 1.21647 1.02871 0.91182 0.98520 1.20235 1.02477 0.99371 0.85461 1.22350 1.05509 0.90907 0.96919 1.74748 1.15947 1.24355 1.00119 1.78479 1.21335 0.88020 1.21293 1.44675 1.44850 1.11675 1.07347 0.69964 1.21565 1.07376 0.97751 0.86540 1.23390 0.98425 0.79239 0.99603 0.92008 0.77200 0.87733 0.87432 0.88345 0.92555 0.89394 0.87056 0.87665 0.89444 0.94539 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.56 13.51 21.45 0.29 -51.27 16 2 C -0.01 -0.41 5.41 84.66 0.46 0.05 16 3 Si 1.11 44.09 29.90 68.60 2.05 46.14 16 4 H -0.30 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 6 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.64 -29.28 8.56 25.60 0.22 -29.06 16 8 H 0.07 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.20 8.43 0.93 -10.88 -0.01 8.42 16 10 O -0.57 -24.33 12.41 -148.98 -1.85 -26.18 16 11 C 0.09 2.73 7.70 86.44 0.67 3.39 16 12 N -0.63 -22.04 3.61 -839.73 -3.03 -25.07 16 13 C 0.52 17.83 7.02 87.66 0.62 18.44 16 14 O -0.60 -25.62 17.13 -3.01 -0.05 -25.67 16 15 C -0.02 -0.37 2.78 -12.19 -0.03 -0.40 16 16 H 0.14 2.43 7.70 -2.39 -0.02 2.41 16 17 C -0.10 -2.01 5.21 30.78 0.16 -1.85 16 18 C -0.10 -1.32 5.90 30.77 0.18 -1.14 16 19 C -0.04 -0.62 6.30 29.96 0.19 -0.43 16 20 C -0.02 -0.42 7.11 41.77 0.30 -0.12 16 21 N -0.29 -9.03 12.40 -48.96 -0.61 -9.64 16 22 N -0.11 -3.57 13.40 37.02 0.50 -3.08 16 23 N -0.37 -10.22 6.87 -48.26 -0.33 -10.55 16 24 H 0.45 10.89 8.96 -219.68 -1.97 8.92 16 25 C 0.00 0.13 5.97 41.52 0.25 0.38 16 26 C 0.12 5.07 7.46 86.49 0.65 5.71 16 27 H 0.27 15.53 5.88 -92.71 -0.54 14.98 16 28 H 0.38 13.40 9.09 -74.06 -0.67 12.72 16 29 H 0.10 2.85 8.09 -2.38 -0.02 2.83 16 30 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.36 8.08 -2.38 -0.02 1.34 16 33 H 0.09 0.89 8.12 -2.39 -0.02 0.87 16 34 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.04 1.80 7.90 -2.38 -0.02 1.78 16 38 H 0.08 3.67 8.09 -2.39 -0.02 3.65 16 Total: -1.00 -70.87 321.36 -0.70 -71.57 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -1.30 Total: 30.34 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 3.64 Total: 3.39 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -3.19 Total: -99.60 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -1.90 Total: -51.85 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.05 Total: 46.14 kcal Total: -70.87 -0.70 -71.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334391499.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.727 kcal (2) G-P(sol) polarization free energy of solvation -70.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds