Wall clock time and date at job start Tue Mar 31 2020 03:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46854 * 2 1 4 4 C 1.50695 * 109.47486 * 120.00236 * 2 1 3 5 5 O 1.21280 * 120.00223 * 120.00125 * 4 2 1 6 6 N 1.34776 * 119.99784 * 300.00190 * 4 2 1 7 7 C 1.46503 * 120.00209 * 180.02562 * 6 4 2 8 8 C 1.50700 * 109.47394 * 180.02562 * 7 6 4 9 9 H 1.07996 * 119.99806 * 359.97438 * 8 7 6 10 10 C 1.37872 * 119.99886 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00422 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99820 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46968 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47209 * 119.99724 * 12 10 8 15 15 H 1.48508 * 109.46710 * 239.99531 * 12 10 8 16 16 N 1.46508 * 109.47170 * 240.00503 * 2 1 3 17 17 C 1.34515 * 126.74293 * 325.01172 * 16 2 1 18 18 N 1.30672 * 108.28930 * 179.73328 * 17 16 2 19 19 C 1.33967 * 109.77965 * 0.38132 * 18 17 16 20 20 C 1.48479 * 125.64814 * 179.87562 * 19 18 17 21 21 N 1.34044 * 126.67337 * 179.71987 * 20 19 18 22 22 N 1.28982 * 107.27055 * 179.73563 * 21 20 19 23 23 N 1.28731 * 108.94142 * 359.97438 * 22 21 20 24 24 H 0.97004 * 125.34260 * 179.97438 * 23 22 21 25 25 N 1.28872 * 109.31844 * 0.02562 * 23 22 21 26 26 N 1.31463 * 108.70225 * 359.61695 * 19 18 17 27 27 H 1.09005 * 109.46854 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47305 * 299.99760 * 1 2 3 29 29 H 1.08999 * 109.47651 * 60.00417 * 1 2 3 30 30 H 0.97005 * 120.00316 * 359.97438 * 6 4 2 31 31 H 1.09005 * 109.46896 * 299.99819 * 7 6 4 32 32 H 1.08997 * 109.46938 * 59.99275 * 7 6 4 33 33 H 0.97001 * 120.00446 * 180.02562 * 11 10 8 34 34 H 1.08005 * 125.85926 * 359.96757 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1956 -0.9403 3.6507 8 6 1.6927 -0.2304 4.8812 9 1 1.0714 0.6474 4.7821 10 6 2.0265 -0.7009 6.1333 11 7 2.7835 -1.7696 6.2540 12 14 1.4036 0.1795 7.6586 13 1 0.5781 1.3458 7.2545 14 1 0.5796 -0.7543 8.4673 15 1 2.5587 0.6471 8.4665 16 7 2.0183 -0.6905 -1.1963 17 6 1.4540 -1.7523 -1.7993 18 7 2.1835 -2.0711 -2.8355 19 6 3.2308 -1.2405 -2.9254 20 6 4.2854 -1.2875 -3.9695 21 7 5.3378 -0.4650 -4.0821 22 7 6.0121 -0.8448 -5.1139 23 7 5.4277 -1.8622 -5.6437 24 1 5.7333 -2.3372 -6.4323 25 7 4.3721 -2.1499 -4.9626 26 7 3.1672 -0.3736 -1.9392 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.1493 0.5389 2.5436 31 1 1.8327 -1.9681 3.6508 32 1 3.2856 -0.9398 3.6504 33 1 3.0181 -2.1008 7.1350 34 1 0.5505 -2.2529 -1.4837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588986100.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:44 Heat of formation + Delta-G solvation = 185.265356 kcal Electronic energy + Delta-G solvation = -22014.902925 eV Core-core repulsion = 18409.566826 eV Total energy + Delta-G solvation = -3605.336099 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.68420 -42.23079 -39.22739 -35.26872 -34.51569 -34.43355 -33.41743 -32.46911 -31.54236 -30.13054 -27.40516 -25.57553 -24.97863 -24.54022 -23.00730 -21.64829 -21.21134 -19.87373 -19.32024 -17.98034 -17.39662 -17.03784 -16.16153 -15.92528 -15.20524 -15.11392 -14.97157 -14.73839 -14.15240 -14.03900 -13.31222 -12.94032 -12.72755 -12.51925 -12.43235 -12.09441 -11.97640 -11.63826 -11.53133 -11.35787 -11.34203 -11.05069 -10.98265 -10.41877 -10.20195 -10.14388 -9.64973 -9.49557 -9.10545 -8.86335 -8.10689 -6.25479 -4.33621 0.73311 1.17016 1.71335 1.90723 2.17965 2.95657 3.05719 3.18247 3.18478 3.25501 3.28058 3.73095 3.80763 4.26421 4.39891 4.48027 4.66609 4.85013 4.99959 5.11119 5.12474 5.26613 5.28237 5.39856 5.70573 5.94474 6.09523 6.14294 6.60176 7.13290 7.17410 7.37226 7.51901 7.79476 7.84783 7.98612 8.36203 8.59807 8.83350 9.33221 10.84574 Molecular weight = 292.11amu Principal moments of inertia in cm(-1) A = 0.031950 B = 0.002848 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.158336 B = 9828.973009 C =10255.473533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 H 0.132 0.868 4 C 0.487 3.513 5 O -0.536 6.536 6 N -0.700 5.700 7 C 0.250 3.750 8 C -0.546 4.546 9 H 0.065 0.935 10 C 0.064 3.936 11 N -0.884 5.884 12 Si 0.905 3.095 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.282 1.282 16 N -0.345 5.345 17 C 0.278 3.722 18 N -0.516 5.516 19 C 0.292 3.708 20 C 0.269 3.731 21 N -0.242 5.242 22 N -0.050 5.050 23 N -0.226 5.226 24 H 0.478 0.522 25 N -0.256 5.256 26 N -0.252 5.252 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.393 0.607 31 H 0.030 0.970 32 H 0.029 0.971 33 H 0.267 0.733 34 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 2.684 -20.338 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 H 0.150 0.850 4 C 0.269 3.731 5 O -0.413 6.413 6 N -0.349 5.349 7 C 0.130 3.870 8 C -0.584 4.584 9 H 0.083 0.917 10 C -0.140 4.140 11 N -0.521 5.521 12 Si 0.732 3.268 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.207 1.207 16 N -0.136 5.136 17 C -0.018 4.018 18 N -0.243 5.243 19 C 0.009 3.991 20 C -0.015 4.015 21 N -0.117 5.117 22 N -0.045 5.045 23 N -0.073 5.073 24 H 0.332 0.668 25 N -0.110 5.110 26 N -0.083 5.083 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.226 0.774 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.318 2.384 -20.541 20.808 hybrid contribution -0.868 0.197 0.997 1.337 sum -3.186 2.582 -19.544 19.969 Atomic orbital electron populations 1.22183 0.89983 1.04671 1.05029 1.21507 0.96415 0.98321 0.81238 0.85000 1.20321 0.82243 0.85717 0.84842 1.90759 1.37887 1.26329 1.86371 1.46428 1.51368 1.31164 1.05964 1.19198 0.95520 0.92915 0.79383 1.21208 1.33455 1.13358 0.90373 0.91688 1.24957 0.94742 0.94955 0.99324 1.69977 1.35401 1.22406 1.24287 0.86341 0.78662 0.79465 0.82329 1.19574 1.20750 1.20746 1.50161 1.17791 1.24155 1.21465 1.25929 0.99225 0.87830 0.88824 1.70489 1.05639 1.27313 1.20905 1.19500 0.93002 0.93716 0.92915 1.21321 0.94473 0.91760 0.93900 1.76239 1.03627 1.22072 1.09749 1.78984 1.19829 1.01159 1.04506 1.47814 1.14557 1.21240 1.23708 0.66754 1.75086 1.06099 1.23252 1.06556 1.78384 1.01928 1.22214 1.05747 0.90573 0.88415 0.90257 0.77372 0.95238 0.95314 0.92362 0.75897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 8.75 37.16 0.33 -0.95 16 2 C 0.13 1.65 3.76 -69.08 -0.26 1.39 16 3 H 0.13 1.44 8.14 -51.93 -0.42 1.01 16 4 C 0.49 8.78 7.22 -10.99 -0.08 8.70 16 5 O -0.54 -12.43 16.42 5.56 0.09 -12.34 16 6 N -0.70 -13.07 5.44 -61.47 -0.33 -13.41 16 7 C 0.25 6.23 5.43 -5.19 -0.03 6.20 16 8 C -0.55 -13.98 9.28 -34.44 -0.32 -14.30 16 9 H 0.07 1.54 7.60 -52.49 -0.40 1.14 16 10 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 11 N -0.88 -25.32 13.29 55.43 0.74 -24.59 16 12 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 13 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 N -0.35 -5.05 3.04 -57.26 -0.17 -5.22 16 17 C 0.28 3.68 11.75 -90.71 -1.07 2.62 16 18 N -0.52 -8.00 11.21 -12.37 -0.14 -8.14 16 19 C 0.29 4.83 8.08 -156.63 -1.27 3.57 16 20 C 0.27 4.08 8.31 -156.30 -1.30 2.78 16 21 N -0.24 -3.64 12.54 32.16 0.40 -3.23 16 22 N -0.05 -0.58 13.47 60.35 0.81 0.23 16 23 N -0.23 -1.97 7.90 60.35 0.48 -1.50 16 24 H 0.48 1.49 8.96 -340.37 -3.05 -1.56 16 25 N -0.26 -3.19 12.40 32.17 0.40 -2.79 16 26 N -0.25 -4.31 12.73 32.11 0.41 -3.90 16 27 H 0.08 0.57 7.21 -51.93 -0.37 0.20 16 28 H 0.10 0.66 7.56 -51.93 -0.39 0.27 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.39 5.91 7.74 -40.82 -0.32 5.59 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.22 1.93 7.31 -52.48 -0.38 1.54 16 LS Contribution 314.60 15.07 4.74 4.74 Total: -1.00 -37.22 314.60 -7.43 -44.65 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.74 Total: -1.22 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: -4.09 Total: 11.63 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: 2.59 Total: -62.53 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -37.22 -7.43 -44.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588986100.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.917 kcal (2) G-P(sol) polarization free energy of solvation -37.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds