Wall clock time and date at job start Tue Mar 31 2020 03:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46854 * 2 1 4 4 C 1.50695 * 109.47486 * 120.00236 * 2 1 3 5 5 O 1.21280 * 120.00223 * 120.00125 * 4 2 1 6 6 N 1.34776 * 119.99784 * 300.00190 * 4 2 1 7 7 C 1.46503 * 120.00209 * 180.02562 * 6 4 2 8 8 C 1.50700 * 109.47394 * 180.02562 * 7 6 4 9 9 H 1.07996 * 119.99806 * 359.97438 * 8 7 6 10 10 C 1.37872 * 119.99886 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00422 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99820 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46968 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47209 * 119.99724 * 12 10 8 15 15 H 1.48508 * 109.46710 * 239.99531 * 12 10 8 16 16 N 1.46508 * 109.47170 * 240.00503 * 2 1 3 17 17 C 1.34515 * 126.74293 * 325.01172 * 16 2 1 18 18 N 1.30672 * 108.28930 * 179.73328 * 17 16 2 19 19 C 1.33967 * 109.77965 * 0.38132 * 18 17 16 20 20 C 1.48479 * 125.64814 * 179.87562 * 19 18 17 21 21 N 1.34044 * 126.67337 * 179.71987 * 20 19 18 22 22 N 1.28982 * 107.27055 * 179.73563 * 21 20 19 23 23 N 1.28731 * 108.94142 * 359.97438 * 22 21 20 24 24 H 0.97004 * 125.34260 * 179.97438 * 23 22 21 25 25 N 1.28872 * 109.31844 * 0.02562 * 23 22 21 26 26 N 1.31463 * 108.70225 * 359.61695 * 19 18 17 27 27 H 1.09005 * 109.46854 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47305 * 299.99760 * 1 2 3 29 29 H 1.08999 * 109.47651 * 60.00417 * 1 2 3 30 30 H 0.97005 * 120.00316 * 359.97438 * 6 4 2 31 31 H 1.09005 * 109.46896 * 299.99819 * 7 6 4 32 32 H 1.08997 * 109.46938 * 59.99275 * 7 6 4 33 33 H 0.97001 * 120.00446 * 180.02562 * 11 10 8 34 34 H 1.08005 * 125.85926 * 359.96757 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1956 -0.9403 3.6507 8 6 1.6927 -0.2304 4.8812 9 1 1.0714 0.6474 4.7821 10 6 2.0265 -0.7009 6.1333 11 7 2.7835 -1.7696 6.2540 12 14 1.4036 0.1795 7.6586 13 1 0.5781 1.3458 7.2545 14 1 0.5796 -0.7543 8.4673 15 1 2.5587 0.6471 8.4665 16 7 2.0183 -0.6905 -1.1963 17 6 1.4540 -1.7523 -1.7993 18 7 2.1835 -2.0711 -2.8355 19 6 3.2308 -1.2405 -2.9254 20 6 4.2854 -1.2875 -3.9695 21 7 5.3378 -0.4650 -4.0821 22 7 6.0121 -0.8448 -5.1139 23 7 5.4277 -1.8622 -5.6437 24 1 5.7333 -2.3372 -6.4323 25 7 4.3721 -2.1499 -4.9626 26 7 3.1672 -0.3736 -1.9392 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.1493 0.5389 2.5436 31 1 1.8327 -1.9681 3.6508 32 1 3.2856 -0.9398 3.6504 33 1 3.0181 -2.1008 7.1350 34 1 0.5505 -2.2529 -1.4837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588986100.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:43 Heat of formation + Delta-G solvation = 155.100211 kcal Electronic energy + Delta-G solvation = -22016.210984 eV Core-core repulsion = 18409.566826 eV Total energy + Delta-G solvation = -3606.644157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.65520 -43.33811 -40.73580 -36.44872 -36.18447 -35.51302 -34.55797 -34.22134 -32.66421 -31.22705 -29.21176 -26.55947 -26.03246 -25.67686 -24.65296 -22.97718 -22.29662 -21.30781 -20.24466 -19.43889 -18.37266 -18.26140 -17.83087 -17.16661 -16.74802 -16.45399 -16.29284 -16.03892 -15.59288 -15.10038 -14.80952 -14.30780 -14.05018 -13.62793 -13.51929 -13.39671 -13.31600 -12.90209 -12.76682 -12.63959 -12.52011 -12.38607 -12.35259 -12.20443 -11.46134 -11.40632 -11.32275 -10.86904 -10.82681 -10.43606 -9.93290 -8.28954 -6.45389 -0.28027 0.11908 0.69764 0.89609 1.35496 1.45568 1.46215 1.52764 1.59503 1.93160 2.17663 2.28649 2.47786 2.77653 3.07127 3.44973 3.55919 3.68851 3.79786 3.86059 4.14628 4.25040 4.60949 4.72458 4.85917 4.96016 5.09504 5.18318 5.22031 5.42473 5.51420 5.58470 5.66832 5.83094 6.64538 6.70790 6.76210 6.96793 7.21562 7.36513 8.83296 Molecular weight = 292.11amu Principal moments of inertia in cm(-1) A = 0.031950 B = 0.002848 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.158336 B = 9828.973009 C =10255.473533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.153 0.847 4 C 0.487 3.513 5 O -0.593 6.593 6 N -0.690 5.690 7 C 0.267 3.733 8 C -0.551 4.551 9 H 0.091 0.909 10 C 0.003 3.997 11 N -0.933 5.933 12 Si 0.983 3.017 13 H -0.248 1.248 14 H -0.280 1.280 15 H -0.284 1.284 16 N -0.352 5.352 17 C 0.285 3.715 18 N -0.535 5.535 19 C 0.283 3.717 20 C 0.247 3.753 21 N -0.274 5.274 22 N -0.045 5.045 23 N -0.188 5.188 24 H 0.500 0.500 25 N -0.255 5.255 26 N -0.288 5.288 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.415 0.585 31 H -0.007 1.007 32 H -0.017 1.017 33 H 0.268 0.732 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.015 4.170 -21.039 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.039 3.961 3 H 0.170 0.830 4 C 0.271 3.729 5 O -0.474 6.474 6 N -0.340 5.340 7 C 0.144 3.856 8 C -0.589 4.589 9 H 0.109 0.891 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.807 3.193 13 H -0.171 1.171 14 H -0.206 1.206 15 H -0.210 1.210 16 N -0.143 5.143 17 C -0.010 4.010 18 N -0.263 5.263 19 C 0.000 4.000 20 C -0.036 4.036 21 N -0.148 5.148 22 N -0.040 5.040 23 N -0.041 5.041 24 H 0.361 0.639 25 N -0.110 5.110 26 N -0.119 5.119 27 H 0.101 0.899 28 H 0.134 0.866 29 H 0.126 0.874 30 H 0.252 0.748 31 H 0.011 0.989 32 H 0.000 1.000 33 H 0.076 0.924 34 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -4.497 3.922 -21.291 22.112 hybrid contribution -0.129 -0.359 1.084 1.149 sum -4.626 3.564 -20.208 21.035 Atomic orbital electron populations 1.22310 0.85673 1.05955 1.07313 1.21646 0.99277 0.97655 0.77539 0.83001 1.21318 0.80648 0.84874 0.86030 1.90736 1.40258 1.29111 1.87338 1.46043 1.51640 1.31552 1.04813 1.18583 0.92737 0.91999 0.82253 1.21644 1.33078 1.13769 0.90374 0.89141 1.26058 0.94780 0.95600 1.03255 1.70145 1.37290 1.24565 1.25161 0.85131 0.78010 0.78677 0.77527 1.17140 1.20600 1.21017 1.50309 1.17382 1.24874 1.21729 1.26799 0.99662 0.86890 0.87681 1.70493 1.05932 1.27693 1.22207 1.19812 0.93480 0.93682 0.93067 1.21352 0.94832 0.92733 0.94683 1.76217 1.04250 1.23193 1.11126 1.78905 1.19461 1.01657 1.04005 1.47862 1.12944 1.19987 1.23334 0.63902 1.75032 1.06972 1.22776 1.06233 1.78285 1.03473 1.23514 1.06653 0.89869 0.86649 0.87364 0.74811 0.98863 0.99952 0.92354 0.71804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.75 71.98 0.63 -1.22 16 2 C 0.14 3.34 3.76 44.24 0.17 3.50 16 3 H 0.15 2.94 8.14 -2.38 -0.02 2.92 16 4 C 0.49 17.46 7.22 87.66 0.63 18.09 16 5 O -0.59 -28.47 16.42 -3.03 -0.05 -28.52 16 6 N -0.69 -25.51 5.44 -466.79 -2.54 -28.05 16 7 C 0.27 13.77 5.43 85.63 0.46 14.23 16 8 C -0.55 -28.07 9.28 25.60 0.24 -27.84 16 9 H 0.09 4.05 7.60 -2.91 -0.02 4.03 16 10 C 0.00 0.14 5.46 84.65 0.46 0.60 16 11 N -0.93 -55.04 13.29 21.45 0.28 -54.75 16 12 Si 0.98 40.65 29.54 68.60 2.03 42.68 16 13 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 14 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 15 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 16 N -0.35 -9.92 3.04 -335.06 -1.02 -10.94 16 17 C 0.29 7.12 11.75 180.38 2.12 9.24 16 18 N -0.54 -16.29 11.21 -193.05 -2.16 -18.45 16 19 C 0.28 9.42 8.08 137.50 1.11 10.53 16 20 C 0.25 7.52 8.31 137.39 1.14 8.66 16 21 N -0.27 -8.28 12.54 -52.17 -0.65 -8.93 16 22 N -0.05 -1.03 13.47 37.02 0.50 -0.53 16 23 N -0.19 -3.03 7.90 37.02 0.29 -2.74 16 24 H 0.50 2.09 8.96 -347.53 -3.12 -1.02 16 25 N -0.25 -6.16 12.40 -52.12 -0.65 -6.81 16 26 N -0.29 -9.90 12.73 -52.32 -0.67 -10.57 16 27 H 0.08 0.93 7.21 -2.38 -0.02 0.91 16 28 H 0.12 1.05 7.56 -2.39 -0.02 1.03 16 29 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.41 11.58 7.74 -92.70 -0.72 10.86 16 31 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 32 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 33 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.27 3.81 7.31 -2.91 -0.02 3.78 16 Total: -1.00 -86.07 314.60 -0.31 -86.38 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -2.64 Total: 5.42 kcal Atomic # 6 Polarization: 28.84 SS G_CDS: 6.97 Total: 35.81 kcal Atomic # 7 Polarization: -135.15 SS G_CDS: -6.61 Total: -141.77 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.05 Total: -28.52 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -86.07 -0.31 -86.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588986100.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.481 kcal (2) G-P(sol) polarization free energy of solvation -86.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds