Wall clock time and date at job start Tue Mar 31 2020 03:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48505 * 109.46896 * 240.00129 * 3 2 1 5 5 H 1.48501 * 109.47246 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47334 * 120.00229 * 3 2 1 7 7 C 1.38808 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99992 * 145.97817 * 7 2 1 9 9 N 1.36934 * 120.00062 * 325.98205 * 7 2 1 10 10 C 1.47428 * 125.64941 * 348.09168 * 9 7 2 11 11 C 1.54909 * 104.83177 * 204.09213 * 10 9 7 12 12 C 1.55156 * 101.58520 * 322.99367 * 11 10 9 13 13 O 1.42901 * 110.72007 * 277.13923 * 12 11 10 14 14 C 1.52995 * 110.72190 * 153.86355 * 12 11 10 15 15 N 1.46501 * 109.47435 * 185.00036 * 14 12 11 16 16 C 1.34774 * 119.99960 * 180.02562 * 15 14 12 17 17 O 1.21549 * 120.00568 * 359.97438 * 16 15 14 18 18 C 1.47831 * 119.99564 * 179.97438 * 16 15 14 19 19 C 1.39946 * 120.94273 * 359.72178 * 18 16 15 20 20 N 1.32148 * 118.92629 * 179.70016 * 19 18 16 21 21 C 1.31870 * 120.96512 * 0.60338 * 20 19 18 22 22 N 1.31873 * 122.09746 * 359.66576 * 21 20 19 23 23 C 1.32146 * 120.96457 * 0.02562 * 22 21 20 24 24 C 1.47022 * 125.64790 * 167.78848 * 9 7 2 25 25 H 0.97004 * 119.99808 * 174.25644 * 1 2 3 26 26 H 1.08995 * 110.36440 * 322.93608 * 10 9 7 27 27 H 1.09004 * 110.36476 * 85.25907 * 10 9 7 28 28 H 1.09008 * 111.00348 * 81.06686 * 11 10 9 29 29 H 1.09000 * 111.00478 * 204.91821 * 11 10 9 30 30 H 0.96698 * 113.99960 * 180.02562 * 13 12 11 31 31 H 1.09001 * 109.47435 * 305.00101 * 14 12 11 32 32 H 1.09008 * 109.47052 * 64.99670 * 14 12 11 33 33 H 0.96998 * 119.99392 * 359.97438 * 15 14 12 34 34 H 1.07997 * 120.53802 * 359.97079 * 19 18 16 35 35 H 1.08001 * 118.95584 * 179.68303 * 21 20 19 36 36 H 1.08002 * 120.53845 * 180.02562 * 23 22 21 37 37 H 1.09001 * 109.88532 * 298.39571 * 24 9 7 38 38 H 1.09005 * 109.88581 * 59.55849 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 2.9516 -1.2823 -0.5228 9 7 1.5014 -2.2862 0.6645 10 6 0.3735 -2.2609 1.6136 11 6 0.5848 -3.5038 2.5137 12 6 1.1334 -4.5370 1.4946 13 8 0.0637 -5.1598 0.7804 14 6 1.9987 -5.5845 2.1981 15 7 2.5980 -6.4734 1.1997 16 6 3.4046 -7.4797 1.5911 17 8 3.6352 -7.6495 2.7723 18 6 4.0089 -8.3770 0.5836 19 6 3.7522 -8.2031 -0.7811 20 7 4.3181 -9.0247 -1.6478 21 6 5.1039 -10.0029 -1.2419 22 7 5.3680 -10.2059 0.0340 23 6 4.8492 -9.4282 0.9679 24 6 1.9853 -3.6693 0.5441 25 1 -0.4850 -0.8359 -0.0841 26 1 0.4014 -1.3501 2.2116 27 1 -0.5736 -2.3361 1.0793 28 1 1.3164 -3.3000 3.2957 29 1 -0.3591 -3.8409 2.9422 30 1 0.3534 -5.8148 0.1307 31 1 2.7878 -5.0855 2.7606 32 1 1.3801 -6.1683 2.8798 33 1 2.4137 -6.3381 0.2570 34 1 3.1056 -7.4076 -1.1209 35 1 5.5454 -10.6585 -1.9779 36 1 5.0705 -9.6005 2.0109 37 1 1.8673 -4.0154 -0.4827 38 1 3.0339 -3.7220 0.8370 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754749204.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:09 Heat of formation + Delta-G solvation = -4.465146 kcal Electronic energy + Delta-G solvation = -23069.391751 eV Core-core repulsion = 19527.075912 eV Total energy + Delta-G solvation = -3542.315838 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.61713 -39.94229 -38.65142 -35.52533 -34.71299 -34.07279 -32.82454 -32.24266 -29.64584 -28.59282 -26.15471 -25.25277 -24.84616 -23.55138 -21.40362 -20.30880 -20.19635 -18.79322 -18.08210 -17.86892 -17.53165 -16.44893 -15.85933 -15.83540 -15.06131 -14.75981 -14.59022 -14.24069 -14.11795 -13.98814 -13.76974 -13.38880 -13.20313 -12.99588 -12.37304 -12.08736 -11.90989 -11.37581 -11.13557 -10.83107 -10.73154 -10.58494 -10.50358 -10.21725 -10.18102 -10.05618 -9.85222 -9.77656 -9.60942 -9.38712 -8.39240 -7.04422 -6.20623 -3.14825 -0.03184 0.54678 2.46740 2.68431 3.36943 3.47681 3.52819 3.55933 3.67048 3.70415 3.95254 4.20704 4.23716 4.38460 4.51884 4.69108 4.83373 4.94365 5.10814 5.19783 5.22472 5.42092 5.62023 5.72124 5.76713 5.91760 5.98576 6.13181 6.21949 6.32622 6.35085 6.38226 6.89476 7.02448 7.03117 7.49908 7.68711 7.70758 7.77161 8.42301 8.93952 9.75564 10.29687 11.13916 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.022708 B = 0.003496 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.743347 B = 8006.208355 C = 8550.057149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.019 4.019 3 Si 1.057 2.943 4 H -0.293 1.293 5 H -0.285 1.285 6 H -0.293 1.293 7 C -0.350 4.350 8 H 0.067 0.933 9 N -0.597 5.597 10 C 0.148 3.852 11 C -0.118 4.118 12 C 0.104 3.896 13 O -0.542 6.542 14 C 0.105 3.895 15 N -0.719 5.719 16 C 0.570 3.430 17 O -0.528 6.528 18 C -0.241 4.241 19 C 0.185 3.815 20 N -0.519 5.519 21 C 0.314 3.686 22 N -0.522 5.522 23 C 0.209 3.791 24 C 0.116 3.884 25 H 0.270 0.730 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.365 0.635 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.398 0.602 34 H 0.172 0.828 35 H 0.203 0.797 36 H 0.183 0.817 37 H 0.024 0.976 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.275 -18.338 0.762 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.222 4.222 3 Si 0.886 3.114 4 H -0.220 1.220 5 H -0.211 1.211 6 H -0.221 1.221 7 C -0.477 4.477 8 H 0.084 0.916 9 N -0.324 5.324 10 C 0.022 3.978 11 C -0.157 4.157 12 C 0.063 3.937 13 O -0.346 6.346 14 C -0.019 4.019 15 N -0.371 5.371 16 C 0.355 3.645 17 O -0.405 6.405 18 C -0.248 4.248 19 C 0.018 3.982 20 N -0.233 5.233 21 C 0.027 3.973 22 N -0.235 5.235 23 C 0.042 3.958 24 C -0.010 4.010 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.211 0.789 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.233 0.767 34 H 0.189 0.811 35 H 0.219 0.781 36 H 0.200 0.800 37 H 0.042 0.958 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.356 -16.907 1.320 18.110 hybrid contribution 0.126 -1.427 -0.513 1.522 sum 6.482 -18.334 0.807 19.463 Atomic orbital electron populations 1.70788 1.06891 1.30261 1.46477 1.25675 0.96138 1.00940 0.99439 0.83650 0.75118 0.76344 0.76270 1.22006 1.21072 1.22070 1.19660 1.04112 0.89574 1.34318 0.91554 1.44506 1.37576 1.01749 1.48601 1.21510 0.91402 0.94605 0.90263 1.22827 1.01196 0.95156 0.96529 1.22563 0.86943 0.90922 0.93313 1.86650 1.33482 1.58640 1.55844 1.22149 0.97231 0.91373 0.91136 1.45866 1.49076 1.31120 1.11035 1.17720 0.78732 0.80280 0.87776 1.90812 1.60642 1.71755 1.17259 1.21834 1.05090 1.01676 0.96213 1.23525 0.92018 0.94555 0.88119 1.68502 1.10045 1.05431 1.39278 1.25327 0.88922 0.91439 0.91598 1.68601 1.23815 1.28581 1.02520 1.23547 0.85894 0.85886 1.00454 1.21940 0.95941 0.87344 0.95813 0.91913 0.92696 0.95172 0.89992 0.90445 0.78860 0.89706 0.90117 0.76666 0.81101 0.78054 0.80045 0.95795 0.94935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 12.87 55.49 0.71 -26.32 16 2 C -0.02 -0.54 4.95 -17.43 -0.09 -0.62 16 3 Si 1.06 24.98 30.03 -169.99 -5.10 19.88 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.35 -9.72 9.97 -15.06 -0.15 -9.87 16 8 H 0.07 1.84 8.02 -52.48 -0.42 1.42 16 9 N -0.60 -14.68 3.33 -170.06 -0.57 -15.25 16 10 C 0.15 3.36 5.33 -2.53 -0.01 3.35 16 11 C -0.12 -2.03 6.26 -24.58 -0.15 -2.18 16 12 C 0.10 1.60 0.93 -88.78 -0.08 1.52 16 13 O -0.54 -8.13 13.10 -35.23 -0.46 -8.59 16 14 C 0.10 1.33 4.74 -4.04 -0.02 1.31 16 15 N -0.72 -7.57 5.09 -61.25 -0.31 -7.88 16 16 C 0.57 6.55 7.79 -12.34 -0.10 6.45 16 17 O -0.53 -7.72 16.45 5.32 0.09 -7.64 16 18 C -0.24 -2.31 5.91 -104.69 -0.62 -2.92 16 19 C 0.19 1.58 10.81 -16.78 -0.18 1.39 16 20 N -0.52 -4.78 10.42 -14.24 -0.15 -4.93 16 21 C 0.31 2.56 12.27 -92.02 -1.13 1.43 16 22 N -0.52 -4.89 10.42 -14.24 -0.15 -5.04 16 23 C 0.21 1.98 10.88 -16.77 -0.18 1.79 16 24 C 0.12 2.21 6.04 -3.06 -0.02 2.19 16 25 H 0.27 8.15 6.45 -40.82 -0.26 7.88 16 26 H 0.05 1.36 7.82 -51.93 -0.41 0.96 16 27 H 0.03 0.75 7.03 -51.93 -0.36 0.39 16 28 H 0.08 1.30 8.04 -51.92 -0.42 0.88 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.37 3.88 8.06 45.56 0.37 4.25 16 31 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 32 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 33 H 0.40 3.34 5.51 -40.82 -0.22 3.12 16 34 H 0.17 1.02 6.54 -52.49 -0.34 0.68 16 35 H 0.20 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.18 1.52 7.74 -52.49 -0.41 1.12 16 37 H 0.02 0.45 8.07 -51.93 -0.42 0.04 16 38 H 0.03 0.62 7.82 -51.93 -0.41 0.21 16 LS Contribution 322.45 15.07 4.86 4.86 Total: -1.00 -34.90 322.45 -7.60 -42.50 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -3.79 Total: 4.58 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -2.73 Total: 3.83 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.46 Total: -59.42 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.37 Total: -16.23 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.10 Total: 19.88 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.90 -7.60 -42.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754749204.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.038 kcal (2) G-P(sol) polarization free energy of solvation -34.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds