Wall clock time and date at job start Tue Mar 31 2020 02:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47292 * 2 1 4 4 C 1.50697 * 110.53575 * 179.97438 * 3 2 1 5 5 C 1.39866 * 126.04274 * 32.10227 * 4 3 2 6 6 N 1.30835 * 108.20661 * 179.97438 * 5 4 3 7 7 N 1.40084 * 108.20255 * 0.02562 * 6 5 4 8 8 C 1.46506 * 126.03387 * 179.97438 * 7 6 5 9 9 C 1.34948 * 107.92882 * 0.26245 * 7 6 5 10 10 N 1.47320 * 110.72964 * 57.07521 * 3 2 1 11 11 C 1.34525 * 106.61816 * 241.41195 * 10 3 2 12 12 O 1.21535 * 123.76967 * 179.97438 * 11 10 3 13 13 N 1.33791 * 112.45930 * 0.02562 * 11 10 3 14 14 C 1.46504 * 124.17876 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.46948 * 269.96081 * 14 13 11 16 16 H 1.08006 * 119.99719 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00050 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99844 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00024 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47079 * 90.00193 * 19 17 15 21 21 H 1.48499 * 109.47401 * 210.00195 * 19 17 15 22 22 H 1.48500 * 109.47235 * 330.00265 * 19 17 15 23 23 C 1.34770 * 111.64695 * 0.02562 * 13 11 10 24 24 O 1.21228 * 127.15883 * 179.97438 * 23 13 11 25 25 H 1.09001 * 109.46738 * 59.99871 * 1 2 3 26 26 H 1.08995 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47319 * 300.00649 * 1 2 3 28 28 H 1.09002 * 109.47227 * 239.99839 * 2 1 3 29 29 H 1.09002 * 109.46832 * 119.99349 * 2 1 3 30 30 H 1.08001 * 125.89598 * 359.97438 * 5 4 3 31 31 H 1.09001 * 109.47060 * 90.02984 * 8 7 6 32 32 H 1.09004 * 109.47073 * 210.02473 * 8 7 6 33 33 H 1.09000 * 109.47212 * 330.02555 * 8 7 6 34 34 H 1.07995 * 126.12877 * 179.73791 * 9 7 6 35 35 H 0.96997 * 126.68695 * 61.39460 * 10 3 2 36 36 H 1.09000 * 109.47210 * 29.95465 * 14 13 11 37 37 H 1.08995 * 109.46999 * 149.95790 * 14 13 11 38 38 H 0.96998 * 120.00235 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5468 1.4704 0.0006 5 6 4.3876 0.5278 -0.5999 6 7 5.6265 0.8906 -0.3869 7 7 5.6131 2.0772 0.3575 8 6 6.7895 2.8228 0.8119 9 6 4.3254 2.4088 0.5876 10 7 1.5078 2.1838 1.1565 11 6 0.7773 3.1984 0.6601 12 8 0.1929 4.0108 1.3497 13 7 0.7650 3.2127 -0.6777 14 6 0.0503 4.2056 -1.4837 15 6 -1.3483 3.7165 -1.7591 16 1 -1.6722 2.7613 -1.3728 17 6 -2.2143 4.4883 -2.5042 18 7 -1.8198 5.6511 -2.9750 19 14 -3.9477 3.8816 -2.8462 20 1 -4.8564 4.3458 -1.7673 21 1 -4.4122 4.4195 -4.1501 22 1 -3.9524 2.3974 -2.8931 23 6 1.4914 2.2008 -1.1924 24 8 1.6695 1.9497 -2.3649 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 4.0692 -0.3484 -1.1452 31 1 7.0711 3.5541 0.0543 32 1 6.5559 3.3371 1.7442 33 1 7.6167 2.1320 0.9754 34 1 3.9784 3.2703 1.1387 35 1 1.6552 1.9798 2.0933 36 1 0.0046 5.1496 -0.9407 37 1 0.5757 4.3541 -2.4270 38 1 -2.4289 6.1939 -3.4995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157918749.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:39 Heat of formation + Delta-G solvation = 38.843293 kcal Electronic energy + Delta-G solvation = -24175.093403 eV Core-core repulsion = 20634.655559 eV Total energy + Delta-G solvation = -3540.437843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.20623 -40.95140 -37.84606 -36.19493 -34.75805 -33.37811 -32.71595 -31.83797 -30.40290 -27.96047 -27.60281 -25.46313 -23.67246 -22.87067 -21.70949 -20.92990 -20.32514 -19.50052 -17.57410 -17.18144 -16.70081 -15.82263 -15.56606 -15.41761 -15.11076 -14.89839 -14.46635 -14.14152 -13.93282 -13.77527 -13.59828 -13.05117 -12.99338 -12.81580 -12.73654 -12.31243 -11.64733 -11.50711 -11.42045 -11.09743 -11.00350 -10.94363 -10.73924 -10.41808 -10.02063 -9.86643 -9.59115 -9.52230 -9.17959 -8.55912 -8.51167 -8.43711 -6.11975 -4.16788 1.70577 2.22837 2.39489 2.57709 3.09113 3.31142 3.36203 3.40080 3.68551 3.84385 4.23969 4.40751 4.58202 4.66199 4.79531 4.90646 4.93431 5.10091 5.15885 5.24503 5.35092 5.46446 5.59330 5.69490 5.88355 5.97287 6.00665 6.19274 6.44506 6.45582 6.65353 6.79301 7.07608 7.21321 7.24497 7.53042 7.81427 8.00701 8.05414 8.17150 8.75994 8.90426 9.47979 10.97579 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.022779 B = 0.004855 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.903375 B = 5765.666803 C = 6000.627349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.108 4.108 3 C 0.203 3.797 4 C -0.239 4.239 5 C 0.077 3.923 6 N -0.297 5.297 7 N -0.376 5.376 8 C 0.102 3.898 9 C 0.081 3.919 10 N -0.731 5.731 11 C 0.702 3.298 12 O -0.543 6.543 13 N -0.557 5.557 14 C 0.249 3.751 15 C -0.531 4.531 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.892 5.892 19 Si 0.903 3.097 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.534 3.466 24 O -0.468 6.468 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.188 0.812 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.175 0.825 35 H 0.430 0.570 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.176 -9.561 9.396 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.146 4.146 3 C 0.110 3.890 4 C -0.252 4.252 5 C -0.110 4.110 6 N -0.118 5.118 7 N -0.157 5.157 8 C -0.040 4.040 9 C -0.066 4.066 10 N -0.396 5.396 11 C 0.403 3.597 12 O -0.416 6.416 13 N -0.300 5.300 14 C 0.131 3.869 15 C -0.570 4.570 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.530 5.530 19 Si 0.730 3.270 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C 0.319 3.681 24 O -0.338 6.338 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.204 0.796 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.192 0.808 35 H 0.273 0.727 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.206 -9.158 8.761 19.795 hybrid contribution -1.757 0.010 0.344 1.790 sum 13.449 -9.148 9.105 18.640 Atomic orbital electron populations 1.21853 0.94421 1.02250 1.03313 1.21664 0.97075 0.92227 1.03683 1.19476 0.89347 0.94460 0.85725 1.19626 0.93652 1.00378 1.11548 1.23731 0.89219 0.99535 0.98548 1.77380 1.21255 0.98488 1.14635 1.48450 1.05460 1.19769 1.42007 1.21882 0.85907 0.95855 1.00315 1.22263 0.83959 0.99846 1.00561 1.45656 1.54794 1.30924 1.08253 1.15965 0.79375 0.81723 0.82639 1.90958 1.47625 1.41676 1.61383 1.46817 1.46429 1.29648 1.07152 1.19586 0.91434 0.85833 0.90016 1.21245 0.96474 1.05263 1.34006 0.92110 1.24887 0.99006 0.94693 0.95155 1.69919 1.36356 1.11297 1.35416 0.86414 0.83783 0.79106 0.77689 1.20402 1.20963 1.19720 1.20442 0.77673 0.80696 0.89324 1.90715 1.58140 1.68245 1.16671 0.91783 0.91944 0.92110 0.89643 0.90225 0.79556 0.90567 0.89391 0.89227 0.80827 0.72739 0.92930 0.93137 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.40 37.16 0.35 -1.88 16 2 C -0.11 -1.29 4.92 -26.73 -0.13 -1.43 16 3 C 0.20 2.93 1.06 -133.24 -0.14 2.79 16 4 C -0.24 -3.14 5.01 -105.05 -0.53 -3.67 16 5 C 0.08 0.96 11.23 -17.37 -0.19 0.77 16 6 N -0.30 -3.92 12.58 30.62 0.39 -3.53 16 7 N -0.38 -4.26 4.01 -68.16 -0.27 -4.53 16 8 C 0.10 0.69 11.47 59.85 0.69 1.38 16 9 C 0.08 0.97 10.91 -17.22 -0.19 0.78 16 10 N -0.73 -10.44 4.66 -54.02 -0.25 -10.69 16 11 C 0.70 14.03 8.55 -88.02 -0.75 13.28 16 12 O -0.54 -12.74 17.48 5.34 0.09 -12.65 16 13 N -0.56 -12.31 2.59 -122.02 -0.32 -12.63 16 14 C 0.25 6.61 5.45 -5.19 -0.03 6.58 16 15 C -0.53 -15.13 9.39 -34.44 -0.32 -15.45 16 16 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 17 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 18 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 19 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.53 10.64 5.64 -10.55 -0.06 10.58 16 24 O -0.47 -10.59 17.76 5.60 0.10 -10.49 16 25 H 0.06 1.11 7.19 -51.93 -0.37 0.74 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.87 7.59 -51.93 -0.39 0.47 16 28 H 0.09 0.96 7.39 -51.93 -0.38 0.58 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.19 1.90 7.47 -52.49 -0.39 1.50 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.17 1.80 8.03 -52.49 -0.42 1.38 16 35 H 0.43 4.72 8.96 -40.82 -0.37 4.35 16 36 H 0.05 1.48 7.86 -51.93 -0.41 1.08 16 37 H 0.05 1.42 8.00 -51.93 -0.42 1.00 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 331.03 15.07 4.99 4.99 Total: -1.00 -35.51 331.03 -5.78 -41.29 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.81 Total: 1.51 kcal Atomic # 6 Polarization: 16.89 SS G_CDS: -1.41 Total: 15.49 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.28 Total: -56.96 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.19 Total: -23.14 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.51 -5.78 -41.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157918749.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.132 kcal (2) G-P(sol) polarization free energy of solvation -35.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds