Wall clock time and date at job start Tue Mar 31 2020 02:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47292 * 2 1 4 4 C 1.50697 * 110.53575 * 179.97438 * 3 2 1 5 5 C 1.39866 * 126.04274 * 32.10227 * 4 3 2 6 6 N 1.30835 * 108.20661 * 179.97438 * 5 4 3 7 7 N 1.40084 * 108.20255 * 0.02562 * 6 5 4 8 8 C 1.46506 * 126.03387 * 179.97438 * 7 6 5 9 9 C 1.34948 * 107.92882 * 0.26245 * 7 6 5 10 10 N 1.47320 * 110.72964 * 57.07521 * 3 2 1 11 11 C 1.34525 * 106.61816 * 241.41195 * 10 3 2 12 12 O 1.21535 * 123.76967 * 179.97438 * 11 10 3 13 13 N 1.33791 * 112.45930 * 0.02562 * 11 10 3 14 14 C 1.46504 * 124.17876 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.46948 * 269.96081 * 14 13 11 16 16 H 1.08006 * 119.99719 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00050 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99844 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00024 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47079 * 90.00193 * 19 17 15 21 21 H 1.48499 * 109.47401 * 210.00195 * 19 17 15 22 22 H 1.48500 * 109.47235 * 330.00265 * 19 17 15 23 23 C 1.34770 * 111.64695 * 0.02562 * 13 11 10 24 24 O 1.21228 * 127.15883 * 179.97438 * 23 13 11 25 25 H 1.09001 * 109.46738 * 59.99871 * 1 2 3 26 26 H 1.08995 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47319 * 300.00649 * 1 2 3 28 28 H 1.09002 * 109.47227 * 239.99839 * 2 1 3 29 29 H 1.09002 * 109.46832 * 119.99349 * 2 1 3 30 30 H 1.08001 * 125.89598 * 359.97438 * 5 4 3 31 31 H 1.09001 * 109.47060 * 90.02984 * 8 7 6 32 32 H 1.09004 * 109.47073 * 210.02473 * 8 7 6 33 33 H 1.09000 * 109.47212 * 330.02555 * 8 7 6 34 34 H 1.07995 * 126.12877 * 179.73791 * 9 7 6 35 35 H 0.96997 * 126.68695 * 61.39460 * 10 3 2 36 36 H 1.09000 * 109.47210 * 29.95465 * 14 13 11 37 37 H 1.08995 * 109.46999 * 149.95790 * 14 13 11 38 38 H 0.96998 * 120.00235 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5468 1.4704 0.0006 5 6 4.3876 0.5278 -0.5999 6 7 5.6265 0.8906 -0.3869 7 7 5.6131 2.0772 0.3575 8 6 6.7895 2.8228 0.8119 9 6 4.3254 2.4088 0.5876 10 7 1.5078 2.1838 1.1565 11 6 0.7773 3.1984 0.6601 12 8 0.1929 4.0108 1.3497 13 7 0.7650 3.2127 -0.6777 14 6 0.0503 4.2056 -1.4837 15 6 -1.3483 3.7165 -1.7591 16 1 -1.6722 2.7613 -1.3728 17 6 -2.2143 4.4883 -2.5042 18 7 -1.8198 5.6511 -2.9750 19 14 -3.9477 3.8816 -2.8462 20 1 -4.8564 4.3458 -1.7673 21 1 -4.4122 4.4195 -4.1501 22 1 -3.9524 2.3974 -2.8931 23 6 1.4914 2.2008 -1.1924 24 8 1.6695 1.9497 -2.3649 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 4.0692 -0.3484 -1.1452 31 1 7.0711 3.5541 0.0543 32 1 6.5559 3.3371 1.7442 33 1 7.6167 2.1320 0.9754 34 1 3.9784 3.2703 1.1387 35 1 1.6552 1.9798 2.0933 36 1 0.0046 5.1496 -0.9407 37 1 0.5757 4.3541 -2.4270 38 1 -2.4289 6.1939 -3.4995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157918749.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:39 Heat of formation + Delta-G solvation = 12.779801 kcal Electronic energy + Delta-G solvation = -24176.223600 eV Core-core repulsion = 20634.655559 eV Total energy + Delta-G solvation = -3541.568041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.61713 -42.02409 -39.51211 -37.65037 -36.53938 -34.86674 -34.07420 -33.16773 -31.43791 -29.86860 -28.62654 -26.59340 -25.56812 -24.34477 -22.87814 -21.99167 -21.65719 -20.80984 -19.05403 -18.79787 -18.28243 -17.41204 -16.95782 -16.74719 -16.57852 -16.27503 -15.84769 -15.45142 -15.22561 -15.04842 -15.01680 -14.54918 -14.27088 -13.81239 -13.67730 -13.59004 -13.41634 -13.16040 -12.72965 -12.69118 -12.49029 -12.39603 -12.15129 -11.96518 -11.92644 -11.59759 -11.12024 -10.69686 -10.63899 -10.45620 -10.34416 -9.51194 -8.31178 -6.45349 0.67495 0.82323 1.34128 1.38726 1.39998 1.50906 1.58643 1.75836 2.16670 2.30868 2.38600 3.01557 3.19754 3.30270 3.75699 3.90753 3.96810 4.26362 4.30693 4.39718 4.43261 4.45866 4.68755 4.70617 4.71878 4.75382 4.93237 4.98735 5.01727 5.03429 5.19722 5.34524 5.53577 5.59546 5.86282 5.93140 5.97324 6.36256 6.53520 6.61121 6.64364 7.19572 7.32051 8.78911 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.022779 B = 0.004855 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.903375 B = 5765.666803 C = 6000.627349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.103 4.103 3 C 0.224 3.776 4 C -0.259 4.259 5 C 0.076 3.924 6 N -0.319 5.319 7 N -0.373 5.373 8 C 0.091 3.909 9 C 0.085 3.915 10 N -0.696 5.696 11 C 0.702 3.298 12 O -0.583 6.583 13 N -0.572 5.572 14 C 0.264 3.736 15 C -0.551 4.551 16 H 0.056 0.944 17 C 0.014 3.986 18 N -0.923 5.923 19 Si 0.971 3.029 20 H -0.270 1.270 21 H -0.273 1.273 22 H -0.265 1.265 23 C 0.524 3.476 24 O -0.503 6.503 25 H 0.019 0.981 26 H 0.090 0.910 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.122 0.878 30 H 0.206 0.794 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.188 0.812 35 H 0.450 0.550 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.855 -11.524 10.783 21.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.141 4.141 3 C 0.132 3.868 4 C -0.272 4.272 5 C -0.110 4.110 6 N -0.141 5.141 7 N -0.153 5.153 8 C -0.049 4.049 9 C -0.064 4.064 10 N -0.362 5.362 11 C 0.403 3.597 12 O -0.460 6.460 13 N -0.315 5.315 14 C 0.144 3.856 15 C -0.589 4.589 16 H 0.074 0.926 17 C -0.186 4.186 18 N -0.562 5.562 19 Si 0.795 3.205 20 H -0.195 1.195 21 H -0.198 1.198 22 H -0.190 1.190 23 C 0.312 3.688 24 O -0.375 6.375 25 H 0.038 0.962 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.140 0.860 30 H 0.223 0.777 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.205 0.795 35 H 0.298 0.702 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.957 -11.173 10.195 21.987 hybrid contribution -1.849 0.667 -0.094 1.968 sum 14.108 -10.506 10.101 20.284 Atomic orbital electron populations 1.21853 0.95859 1.03314 1.00745 1.21788 0.95610 0.90349 1.06392 1.19390 0.90323 0.94798 0.82305 1.19502 0.92377 1.01795 1.13562 1.24054 0.88845 0.99972 0.98156 1.77355 1.21620 0.99577 1.15513 1.48817 1.06311 1.19282 1.40936 1.22269 0.84914 0.96055 1.01658 1.22530 0.84348 0.99610 0.99931 1.45397 1.52689 1.28726 1.09380 1.15988 0.79642 0.82381 0.81666 1.90926 1.49621 1.43542 1.61904 1.46746 1.46852 1.29799 1.08111 1.18989 0.91240 0.86190 0.89155 1.21490 0.97541 1.05306 1.34563 0.92552 1.25838 1.03421 0.94743 0.94619 1.70028 1.38028 1.12360 1.35786 0.85355 0.78292 0.78863 0.78020 1.19497 1.19826 1.18970 1.21448 0.76685 0.80196 0.90520 1.90676 1.59210 1.68989 1.18635 0.96172 0.89143 0.92753 0.88384 0.85972 0.77693 0.90026 0.86684 0.88094 0.79465 0.70206 0.95572 0.95735 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 9.40 71.98 0.68 -3.50 16 2 C -0.10 -2.18 4.92 30.60 0.15 -2.03 16 3 C 0.22 6.12 1.06 2.24 0.00 6.12 16 4 C -0.26 -6.25 5.01 -20.14 -0.10 -6.36 16 5 C 0.08 1.73 11.23 85.24 0.96 2.69 16 6 N -0.32 -7.73 12.58 -57.03 -0.72 -8.44 16 7 N -0.37 -7.55 4.01 -369.54 -1.48 -9.03 16 8 C 0.09 0.99 11.47 127.77 1.47 2.45 16 9 C 0.08 1.83 10.91 83.54 0.91 2.74 16 10 N -0.70 -18.78 4.66 -443.24 -2.06 -20.84 16 11 C 0.70 28.36 8.55 179.44 1.53 29.89 16 12 O -0.58 -27.97 17.48 -3.82 -0.07 -28.04 16 13 N -0.57 -26.18 2.59 -777.21 -2.01 -28.19 16 14 C 0.26 14.84 5.45 85.63 0.47 15.30 16 15 C -0.55 -32.54 9.39 25.60 0.24 -32.30 16 16 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 17 C 0.01 0.81 5.46 84.65 0.46 1.27 16 18 N -0.92 -55.97 13.29 21.44 0.28 -55.69 16 19 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 C 0.52 21.21 5.64 87.94 0.50 21.70 16 24 O -0.50 -23.47 17.76 -2.87 -0.05 -23.52 16 25 H 0.02 0.68 7.19 -2.39 -0.02 0.66 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 27 H 0.05 1.46 7.59 -2.39 -0.02 1.44 16 28 H 0.10 1.91 7.39 -2.39 -0.02 1.89 16 29 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.21 3.62 7.47 -2.91 -0.02 3.59 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.19 3.43 8.03 -2.91 -0.02 3.40 16 35 H 0.45 8.61 8.96 -92.71 -0.83 7.78 16 36 H 0.03 1.58 7.86 -2.39 -0.02 1.56 16 37 H 0.02 1.48 8.00 -2.39 -0.02 1.46 16 38 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -80.77 331.03 3.44 -77.33 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.26 Total: 11.20 kcal Atomic # 6 Polarization: 30.73 SS G_CDS: 7.26 Total: 37.99 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -5.99 Total: -122.19 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -0.12 Total: -51.56 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -80.77 3.44 -77.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157918749.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.105 kcal (2) G-P(sol) polarization free energy of solvation -80.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds