Wall clock time and date at job start Tue Mar 31 2020 02:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38435 * 119.99696 * 2 1 4 4 N 1.32594 * 119.13853 * 359.97438 * 3 2 1 5 5 C 1.32103 * 120.95568 * 180.02562 * 4 3 2 6 6 C 1.50697 * 120.38035 * 180.02562 * 5 4 3 7 7 C 1.38824 * 119.24523 * 0.02562 * 5 4 3 8 8 C 1.39465 * 118.42358 * 359.97438 * 7 5 4 9 9 C 1.48461 * 120.50276 * 179.97438 * 8 7 5 10 10 O 1.21479 * 120.00458 * 0.02562 * 9 8 7 11 11 N 1.34785 * 119.99887 * 179.97438 * 9 8 7 12 12 C 1.47576 * 134.49390 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.11846 * 155.36116 * 12 11 9 14 14 O 1.42894 * 113.74258 * 269.15648 * 13 12 11 15 15 C 1.50696 * 113.73834 * 137.95019 * 13 12 11 16 16 H 1.07999 * 120.00319 * 1.93267 * 15 13 12 17 17 C 1.37885 * 119.99717 * 181.92651 * 15 13 12 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47805 * 134.45494 * 359.87109 * 11 9 8 24 24 N 1.32264 * 119.13556 * 180.27400 * 3 2 1 25 25 H 1.09002 * 109.47850 * 300.00158 * 1 2 3 26 26 H 1.08996 * 109.47257 * 60.00596 * 1 2 3 27 27 H 1.09005 * 109.47264 * 180.02562 * 1 2 3 28 28 H 0.97000 * 119.99797 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47169 * 269.98181 * 6 5 4 30 30 H 1.09003 * 109.47045 * 29.98060 * 6 5 4 31 31 H 1.08999 * 109.47335 * 149.97966 * 6 5 4 32 32 H 1.08003 * 120.78657 * 180.02562 * 7 5 4 33 33 H 1.08999 * 113.76805 * 41.06190 * 12 11 9 34 34 H 1.09000 * 113.87378 * 269.67731 * 12 11 9 35 35 H 0.96701 * 113.99575 * 178.07128 * 14 13 12 36 36 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.09008 * 113.77106 * 90.37414 * 23 11 9 38 38 H 1.08997 * 113.84172 * 318.91386 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1571 1.1989 0.0000 4 7 1.4769 2.3371 -0.0005 5 6 2.1007 3.5015 -0.0010 6 6 1.3147 4.7873 -0.0010 7 6 3.4887 3.5273 -0.0016 8 6 4.1752 2.3134 -0.0010 9 6 5.6596 2.2871 -0.0021 10 8 6.2856 3.3282 -0.0031 11 7 6.3128 1.1081 -0.0010 12 6 7.7348 0.7135 -0.0021 13 6 7.2618 -0.6029 0.6409 14 8 7.2505 -0.5739 2.0695 15 6 7.9394 -1.8281 0.0834 16 1 8.7034 -1.7256 -0.6730 17 6 7.5841 -3.0799 0.5393 18 7 8.1758 -4.1492 0.0532 19 14 6.2623 -3.2571 1.8472 20 1 6.8890 -3.2177 3.1929 21 1 5.2890 -2.1426 1.7216 22 1 5.5580 -4.5520 1.6669 23 6 5.8915 -0.3087 0.0036 24 7 3.4796 1.1790 -0.0055 25 1 -0.3635 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.9500 -0.8401 0.0004 29 1 1.1250 5.0972 -1.0287 30 1 0.3659 4.6331 0.5129 31 1 1.8845 5.5615 0.5127 32 1 4.0242 4.4653 -0.0016 33 1 8.3600 1.3218 0.6515 34 1 8.1572 0.5885 -0.9991 35 1 6.9260 -1.3887 2.4768 36 1 7.9260 -5.0298 0.3741 37 1 5.7698 -0.7341 -0.9926 38 1 5.0475 -0.5152 0.6616 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356576310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:48 Heat of formation + Delta-G solvation = 30.964708 kcal Electronic energy + Delta-G solvation = -23582.268736 eV Core-core repulsion = 20041.489251 eV Total energy + Delta-G solvation = -3540.779485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.12579 -39.58555 -37.68708 -36.07454 -34.57860 -34.22348 -32.53899 -31.49557 -29.14371 -28.72119 -26.49312 -25.95628 -25.31653 -23.62205 -22.67634 -20.29875 -19.02096 -18.04438 -17.61424 -17.22061 -16.34716 -15.99239 -15.71391 -15.63368 -15.17397 -14.77884 -14.67576 -13.90869 -13.65340 -13.61698 -13.42209 -13.18185 -12.87159 -12.68551 -12.53398 -12.36419 -12.31079 -12.14427 -11.25407 -11.01513 -10.89270 -10.61235 -10.50690 -10.35860 -10.14819 -10.10813 -9.37695 -9.23642 -8.98552 -8.59042 -8.19789 -8.03457 -6.41568 -4.47397 0.73004 1.14447 2.76801 2.99824 3.04968 3.08733 3.13771 3.22552 3.94656 4.00509 4.04335 4.38279 4.64268 4.69392 4.98387 5.07243 5.11368 5.26687 5.32218 5.33493 5.37240 5.58230 5.61450 5.65125 5.72784 5.98941 6.15662 6.16128 6.33342 6.41225 6.52276 6.65298 6.70590 7.01721 7.21072 7.33032 8.03425 8.15962 8.22462 8.47823 8.54357 8.62037 9.16166 10.70560 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.005452 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.519720 B = 5134.919182 C = 6354.982334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.705 5.705 3 C 0.563 3.437 4 N -0.559 5.559 5 C 0.213 3.787 6 C -0.102 4.102 7 C -0.237 4.237 8 C 0.193 3.807 9 C 0.579 3.421 10 O -0.546 6.546 11 N -0.608 5.608 12 C 0.127 3.873 13 C 0.189 3.811 14 O -0.554 6.554 15 C -0.535 4.535 16 H 0.091 0.909 17 C 0.081 3.919 18 N -0.877 5.877 19 Si 0.855 3.145 20 H -0.268 1.268 21 H -0.252 1.252 22 H -0.283 1.283 23 C 0.083 3.917 24 N -0.541 5.541 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.417 0.583 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.352 0.648 36 H 0.270 0.730 37 H 0.092 0.908 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.773 9.566 -0.271 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.342 5.342 3 C 0.205 3.795 4 N -0.284 5.284 5 C 0.064 3.936 6 C -0.160 4.160 7 C -0.263 4.263 8 C 0.044 3.956 9 C 0.366 3.634 10 O -0.424 6.424 11 N -0.339 5.339 12 C 0.006 3.994 13 C 0.148 3.852 14 O -0.364 6.364 15 C -0.573 4.573 16 H 0.109 0.891 17 C -0.124 4.124 18 N -0.513 5.513 19 Si 0.683 3.317 20 H -0.194 1.194 21 H -0.177 1.177 22 H -0.210 1.210 23 C -0.040 4.040 24 N -0.266 5.266 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.254 0.746 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.172 0.828 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.204 0.796 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.963 9.783 -0.383 18.726 hybrid contribution -0.367 -0.551 0.719 0.977 sum -16.330 9.232 0.336 18.761 Atomic orbital electron populations 1.21461 0.78046 1.01943 1.02072 1.43873 1.06476 1.03970 1.79928 1.19226 0.84861 0.86635 0.88741 1.67601 1.41111 0.97589 1.22120 1.21430 0.90772 0.93291 0.88127 1.20761 1.00124 0.91416 1.03678 1.22379 0.95060 1.00130 1.08756 1.21376 0.94466 0.88430 0.91365 1.17441 0.84794 0.83026 0.78154 1.90735 1.67167 1.31842 1.52649 1.50047 1.10258 1.05720 1.67909 1.23397 0.81896 0.93391 1.00757 1.20648 0.91343 0.94287 0.78907 1.86456 1.88485 1.40943 1.20551 1.21216 1.23298 0.88271 1.24494 0.89064 1.24981 0.95658 0.95847 0.95892 1.69859 1.40990 0.98432 1.41985 0.87388 0.83019 0.78640 0.82651 1.19429 1.17728 1.20992 1.24645 1.01049 0.76284 1.01989 1.68000 1.06802 1.31055 1.20744 0.92465 0.92421 0.90646 0.74555 0.89615 0.90029 0.89840 0.82794 0.90291 0.88334 0.79611 0.91936 0.88964 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.98 10.67 59.85 0.64 1.61 16 2 N -0.70 -8.73 5.86 -69.14 -0.41 -9.14 16 3 C 0.56 8.71 8.42 -322.93 -2.72 5.99 16 4 N -0.56 -7.99 9.50 -10.16 -0.10 -8.08 16 5 C 0.21 2.76 6.83 -82.26 -0.56 2.20 16 6 C -0.10 -0.85 10.21 36.00 0.37 -0.48 16 7 C -0.24 -3.54 9.39 -38.91 -0.37 -3.90 16 8 C 0.19 3.49 6.79 -82.66 -0.56 2.93 16 9 C 0.58 11.92 8.06 -12.04 -0.10 11.82 16 10 O -0.55 -12.01 17.15 5.38 0.09 -11.92 16 11 N -0.61 -12.79 3.61 -178.98 -0.65 -13.43 16 12 C 0.13 2.67 8.23 -2.97 -0.02 2.64 16 13 C 0.19 4.36 1.06 -90.84 -0.10 4.26 16 14 O -0.55 -13.22 13.35 -35.23 -0.47 -13.69 16 15 C -0.53 -13.81 9.19 -34.44 -0.32 -14.13 16 16 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 17 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.88 -24.47 13.96 55.43 0.77 -23.70 16 19 Si 0.85 18.84 24.31 -169.99 -4.13 14.71 16 20 H -0.27 -5.80 7.05 56.52 0.40 -5.40 16 21 H -0.25 -5.26 5.16 56.52 0.29 -4.97 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.08 1.74 6.12 -2.83 -0.02 1.72 16 24 N -0.54 -9.54 8.12 -10.49 -0.09 -9.63 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.42 4.89 8.94 -40.82 -0.37 4.52 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.15 2.09 7.73 -52.48 -0.41 1.69 16 33 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 34 H 0.10 1.91 8.09 -51.93 -0.42 1.49 16 35 H 0.35 8.02 3.57 45.56 0.16 8.18 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.09 1.88 8.09 -51.92 -0.42 1.46 16 38 H 0.08 1.71 5.93 -51.93 -0.31 1.40 16 LS Contribution 321.28 15.07 4.84 4.84 Total: -1.00 -31.65 321.28 -8.36 -40.02 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -4.38 Total: 13.31 kcal Atomic # 6 Polarization: 20.56 SS G_CDS: -3.85 Total: 16.71 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: -0.46 Total: -63.98 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.38 Total: -25.60 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.13 Total: 14.71 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.65 -8.36 -40.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356576310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.981 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds