Wall clock time and date at job start Tue Mar 31 2020 02:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38435 * 119.99696 * 2 1 4 4 N 1.32594 * 119.13853 * 359.97438 * 3 2 1 5 5 C 1.32103 * 120.95568 * 180.02562 * 4 3 2 6 6 C 1.50697 * 120.38035 * 180.02562 * 5 4 3 7 7 C 1.38824 * 119.24523 * 0.02562 * 5 4 3 8 8 C 1.39465 * 118.42358 * 359.97438 * 7 5 4 9 9 C 1.48461 * 120.50276 * 179.97438 * 8 7 5 10 10 O 1.21479 * 120.00458 * 0.02562 * 9 8 7 11 11 N 1.34785 * 119.99887 * 179.97438 * 9 8 7 12 12 C 1.47576 * 134.49390 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.11846 * 155.36116 * 12 11 9 14 14 O 1.42894 * 113.74258 * 269.15648 * 13 12 11 15 15 C 1.50696 * 113.73834 * 137.95019 * 13 12 11 16 16 H 1.07999 * 120.00319 * 1.93267 * 15 13 12 17 17 C 1.37885 * 119.99717 * 181.92651 * 15 13 12 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47805 * 134.45494 * 359.87109 * 11 9 8 24 24 N 1.32264 * 119.13556 * 180.27400 * 3 2 1 25 25 H 1.09002 * 109.47850 * 300.00158 * 1 2 3 26 26 H 1.08996 * 109.47257 * 60.00596 * 1 2 3 27 27 H 1.09005 * 109.47264 * 180.02562 * 1 2 3 28 28 H 0.97000 * 119.99797 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47169 * 269.98181 * 6 5 4 30 30 H 1.09003 * 109.47045 * 29.98060 * 6 5 4 31 31 H 1.08999 * 109.47335 * 149.97966 * 6 5 4 32 32 H 1.08003 * 120.78657 * 180.02562 * 7 5 4 33 33 H 1.08999 * 113.76805 * 41.06190 * 12 11 9 34 34 H 1.09000 * 113.87378 * 269.67731 * 12 11 9 35 35 H 0.96701 * 113.99575 * 178.07128 * 14 13 12 36 36 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.09008 * 113.77106 * 90.37414 * 23 11 9 38 38 H 1.08997 * 113.84172 * 318.91386 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1571 1.1989 0.0000 4 7 1.4769 2.3371 -0.0005 5 6 2.1007 3.5015 -0.0010 6 6 1.3147 4.7873 -0.0010 7 6 3.4887 3.5273 -0.0016 8 6 4.1752 2.3134 -0.0010 9 6 5.6596 2.2871 -0.0021 10 8 6.2856 3.3282 -0.0031 11 7 6.3128 1.1081 -0.0010 12 6 7.7348 0.7135 -0.0021 13 6 7.2618 -0.6029 0.6409 14 8 7.2505 -0.5739 2.0695 15 6 7.9394 -1.8281 0.0834 16 1 8.7034 -1.7256 -0.6730 17 6 7.5841 -3.0799 0.5393 18 7 8.1758 -4.1492 0.0532 19 14 6.2623 -3.2571 1.8472 20 1 6.8890 -3.2177 3.1929 21 1 5.2890 -2.1426 1.7216 22 1 5.5580 -4.5520 1.6669 23 6 5.8915 -0.3087 0.0036 24 7 3.4796 1.1790 -0.0055 25 1 -0.3635 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.9500 -0.8401 0.0004 29 1 1.1250 5.0972 -1.0287 30 1 0.3659 4.6331 0.5129 31 1 1.8845 5.5615 0.5127 32 1 4.0242 4.4653 -0.0016 33 1 8.3600 1.3218 0.6515 34 1 8.1572 0.5885 -0.9991 35 1 6.9260 -1.3887 2.4768 36 1 7.9260 -5.0298 0.3741 37 1 5.7698 -0.7341 -0.9926 38 1 5.0475 -0.5152 0.6616 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356576310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:47 Heat of formation + Delta-G solvation = 7.417993 kcal Electronic energy + Delta-G solvation = -23583.289798 eV Core-core repulsion = 20041.489251 eV Total energy + Delta-G solvation = -3541.800547 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.31680 -41.20678 -39.34536 -37.04823 -36.30525 -35.43432 -34.55778 -32.52639 -30.81553 -29.67935 -27.87304 -27.20565 -27.08580 -24.96774 -23.68109 -21.99182 -20.55143 -19.54427 -19.08953 -18.67447 -18.08534 -17.34725 -17.14921 -16.95327 -16.36656 -16.22342 -15.71463 -15.51251 -15.32751 -14.95780 -14.61615 -14.50703 -14.28500 -14.10983 -13.88402 -13.66665 -13.16827 -13.02592 -12.99016 -12.69049 -12.47506 -12.13419 -11.95604 -11.77665 -11.67734 -11.30502 -11.16387 -11.00425 -10.68389 -10.15785 -9.77506 -9.17478 -8.43348 -6.55334 -0.52778 0.07168 1.24353 1.28895 1.38492 1.59495 1.65130 1.84380 2.17259 2.73655 2.78752 2.82495 3.14812 3.31769 3.60571 3.81839 3.93518 4.19182 4.27279 4.33666 4.44246 4.46882 4.63108 4.68586 4.72046 4.77293 4.80080 4.81586 4.91090 4.93430 5.01264 5.27475 5.30089 5.64579 6.03162 6.05397 6.27076 6.50289 6.54296 6.66802 6.85126 7.12635 7.19422 8.71940 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.005452 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.519720 B = 5134.919182 C = 6354.982334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.700 5.700 3 C 0.550 3.450 4 N -0.558 5.558 5 C 0.221 3.779 6 C -0.099 4.099 7 C -0.236 4.236 8 C 0.166 3.834 9 C 0.577 3.423 10 O -0.566 6.566 11 N -0.614 5.614 12 C 0.126 3.874 13 C 0.181 3.819 14 O -0.561 6.561 15 C -0.543 4.543 16 H 0.060 0.940 17 C 0.033 3.967 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.258 1.258 21 H -0.234 1.234 22 H -0.278 1.278 23 C 0.101 3.899 24 N -0.567 5.567 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.419 0.581 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.165 0.835 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.356 0.644 36 H 0.274 0.726 37 H 0.095 0.905 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.769 10.704 0.442 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.338 5.338 3 C 0.192 3.808 4 N -0.283 5.283 5 C 0.071 3.929 6 C -0.156 4.156 7 C -0.263 4.263 8 C 0.018 3.982 9 C 0.365 3.635 10 O -0.446 6.446 11 N -0.345 5.345 12 C 0.004 3.996 13 C 0.140 3.860 14 O -0.372 6.372 15 C -0.581 4.581 16 H 0.078 0.922 17 C -0.169 4.169 18 N -0.559 5.559 19 Si 0.739 3.261 20 H -0.184 1.184 21 H -0.158 1.158 22 H -0.204 1.204 23 C -0.022 4.022 24 N -0.294 5.294 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.123 0.877 28 H 0.256 0.744 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.182 0.818 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.208 0.792 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.978 10.915 0.328 21.895 hybrid contribution 0.554 -0.856 0.440 1.111 sum -18.424 10.059 0.768 21.005 Atomic orbital electron populations 1.21666 0.75961 1.03959 1.01976 1.44139 1.07731 1.03159 1.78732 1.19582 0.84508 0.87959 0.88764 1.67773 1.40758 0.97695 1.22032 1.22197 0.90395 0.94588 0.85713 1.20934 1.00121 0.89225 1.05281 1.22574 0.96023 0.99381 1.08344 1.21102 0.93010 0.89997 0.94068 1.17884 0.86143 0.82312 0.77122 1.90704 1.68145 1.32284 1.53490 1.50015 1.09952 1.05996 1.68528 1.23394 0.82509 0.92443 1.01205 1.20672 0.92783 0.93891 0.78621 1.86450 1.88717 1.41226 1.20808 1.21318 1.22893 0.89844 1.24000 0.92221 1.25753 0.97867 0.95240 0.98028 1.69989 1.42960 0.99124 1.43849 0.86402 0.80527 0.79285 0.79902 1.18414 1.15797 1.20408 1.24370 0.99561 0.76374 1.01868 1.67872 1.07979 1.31145 1.22355 0.92507 0.92392 0.87688 0.74365 0.87681 0.88910 0.87913 0.81776 0.90272 0.87269 0.79172 0.91663 0.88697 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.62 10.67 127.77 1.36 2.99 16 2 N -0.70 -15.87 5.86 -372.66 -2.18 -18.06 16 3 C 0.55 16.04 8.42 261.53 2.20 18.24 16 4 N -0.56 -14.57 9.50 -186.05 -1.77 -16.33 16 5 C 0.22 5.14 6.83 42.66 0.29 5.44 16 6 C -0.10 -1.25 10.21 71.24 0.73 -0.52 16 7 C -0.24 -6.66 9.39 22.71 0.21 -6.45 16 8 C 0.17 5.86 6.79 41.98 0.28 6.14 16 9 C 0.58 23.60 8.06 86.97 0.70 24.30 16 10 O -0.57 -24.85 17.15 -3.65 -0.06 -24.91 16 11 N -0.61 -25.68 3.61 -842.31 -3.04 -28.72 16 12 C 0.13 5.34 8.23 86.49 0.71 6.05 16 13 C 0.18 8.34 1.06 -10.87 -0.01 8.33 16 14 O -0.56 -26.29 13.35 -148.98 -1.99 -28.28 16 15 C -0.54 -28.60 9.19 25.60 0.24 -28.36 16 16 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 17 C 0.03 1.72 5.47 84.66 0.46 2.18 16 18 N -0.92 -52.48 13.96 21.45 0.30 -52.18 16 19 Si 0.91 38.34 24.31 68.60 1.67 40.01 16 20 H -0.26 -10.43 7.05 99.48 0.70 -9.73 16 21 H -0.23 -9.05 5.16 99.48 0.51 -8.54 16 22 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 23 C 0.10 4.18 6.12 86.45 0.53 4.71 16 24 N -0.57 -19.40 8.12 -187.11 -1.52 -20.92 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.42 8.99 8.94 -92.71 -0.83 8.17 16 29 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 0.95 8.10 -2.39 -0.02 0.94 16 32 H 0.16 4.17 7.73 -2.91 -0.02 4.14 16 33 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 34 H 0.11 4.31 8.09 -2.39 -0.02 4.30 16 35 H 0.36 15.63 3.57 -74.06 -0.26 15.37 16 36 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 37 H 0.09 3.86 8.09 -2.38 -0.02 3.84 16 38 H 0.08 3.46 5.93 -2.39 -0.01 3.45 16 Total: -1.00 -68.96 321.28 -1.06 -70.02 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: -0.18 Total: 36.32 kcal Atomic # 6 Polarization: 35.34 SS G_CDS: 7.71 Total: 43.05 kcal Atomic # 7 Polarization: -128.00 SS G_CDS: -8.21 Total: -136.21 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -2.05 Total: -53.19 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.67 Total: 40.01 kcal Total: -68.96 -1.06 -70.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356576310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.440 kcal (2) G-P(sol) polarization free energy of solvation -68.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds