Wall clock time and date at job start Tue Mar 31 2020 03:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.46506 * 119.99453 * 300.00085 * 12 2 1 14 14 S 1.65591 * 120.00485 * 119.99872 * 12 2 1 15 15 O 1.42105 * 106.40740 * 203.54008 * 14 12 2 16 16 O 1.42103 * 106.40291 * 336.46194 * 14 12 2 17 17 N 1.65608 * 107.21947 * 90.00027 * 14 12 2 18 18 C 1.46497 * 119.99590 * 65.00148 * 17 14 12 19 19 C 1.53004 * 109.46901 * 165.00529 * 18 17 14 20 20 H 1.08999 * 110.27779 * 60.63568 * 19 18 17 21 21 C 1.54945 * 110.30936 * 182.83206 * 19 18 17 22 22 C 1.55314 * 100.94195 * 155.35559 * 21 19 18 23 23 C 1.54378 * 102.25179 * 325.86612 * 22 21 19 24 24 O 1.43242 * 107.58928 * 21.35485 * 23 22 21 25 25 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 28 28 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47497 * 90.00369 * 13 12 2 30 30 H 1.09004 * 109.46702 * 209.99812 * 13 12 2 31 31 H 1.08998 * 109.47259 * 329.99392 * 13 12 2 32 32 H 0.96998 * 119.99639 * 245.00112 * 17 14 12 33 33 H 1.09001 * 109.47033 * 284.99777 * 18 17 14 34 34 H 1.09000 * 109.47554 * 45.00071 * 18 17 14 35 35 H 1.08997 * 111.12678 * 273.27510 * 21 19 18 36 36 H 1.09001 * 111.12593 * 37.43766 * 21 19 18 37 37 H 1.08996 * 110.84405 * 207.67445 * 22 21 19 38 38 H 1.09001 * 111.02141 * 84.13580 * 22 21 19 39 39 H 1.09000 * 109.83181 * 261.84262 * 23 22 21 40 40 H 1.09000 * 109.90580 * 140.91294 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 7 2.0183 -0.6904 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 16 2.9703 0.1143 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6904 1.4975 -2.1192 17 7 4.5438 -0.1041 -1.8181 18 6 5.1357 -1.4440 -1.8417 19 6 6.6577 -1.3311 -1.7337 20 1 6.9350 -0.8460 -0.7978 21 6 7.3091 -2.7338 -1.8283 22 6 8.7278 -2.3659 -2.3422 23 6 8.4422 -1.1516 -3.2516 24 8 7.1837 -0.5971 -2.8508 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8912 -0.5369 4.4374 29 1 0.7375 -2.1442 -1.9995 30 1 2.4628 -2.5817 -1.9866 31 1 1.5295 -2.5968 -0.4710 32 1 5.0733 0.6551 -1.5282 33 1 4.7539 -2.0247 -1.0020 34 1 4.8735 -1.9406 -2.7760 35 1 7.3573 -3.2114 -0.8498 36 1 6.7827 -3.3638 -2.5454 37 1 9.1577 -3.1873 -2.9154 38 1 9.3825 -2.0868 -1.5167 39 1 8.3902 -1.4727 -4.2919 40 1 9.2289 -0.4064 -3.1337 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407978027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:07 Heat of formation + Delta-G solvation = -117.723168 kcal Electronic energy + Delta-G solvation = -22938.098101 eV Core-core repulsion = 19494.022226 eV Total energy + Delta-G solvation = -3444.075874 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.56037 -36.74453 -36.38380 -35.29439 -34.86992 -32.53042 -32.26293 -30.02766 -29.74822 -25.74324 -25.07503 -25.04039 -21.82478 -21.41523 -20.87983 -18.76777 -17.41674 -17.11402 -16.94172 -16.40649 -16.07405 -15.71960 -15.23148 -14.67571 -14.45242 -13.73591 -13.60403 -13.23805 -13.09929 -12.81954 -12.64515 -12.32842 -12.19520 -12.09605 -11.91149 -11.86610 -11.57960 -11.46715 -11.45402 -11.20554 -11.01015 -10.95668 -10.86820 -10.53211 -10.13895 -9.60666 -9.58950 -9.46399 -9.12667 -8.66956 -8.11326 -6.18918 -4.19726 1.20571 3.22740 3.35497 3.37985 3.41289 3.69833 4.13900 4.30703 4.32395 4.56375 4.71450 4.93022 5.00974 5.10326 5.13930 5.20011 5.44433 5.48403 5.51551 5.57596 5.65881 5.79285 5.82011 5.96804 6.07845 6.13425 6.19377 6.28979 6.40749 6.54268 6.65690 6.86613 6.94779 7.22314 7.31703 7.45830 7.63926 8.40494 8.82684 9.42625 10.93350 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.005358 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.618924 B = 5224.711253 C = 5925.457505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.238 3.762 3 H 0.057 0.943 4 C -0.526 4.526 5 H 0.082 0.918 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.878 3.122 9 H -0.276 1.276 10 H -0.295 1.295 11 H -0.261 1.261 12 N -0.986 5.986 13 C 0.103 3.897 14 S 2.787 3.213 15 O -0.994 6.994 16 O -0.985 6.985 17 N -1.120 6.120 18 C 0.125 3.875 19 C 0.075 3.925 20 H 0.082 0.918 21 C -0.151 4.151 22 C -0.155 4.155 23 C 0.049 3.951 24 O -0.374 6.374 25 H 0.034 0.966 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.265 0.735 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.415 0.585 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.725 -4.268 -9.797 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.133 3.867 3 H 0.075 0.925 4 C -0.565 4.565 5 H 0.100 0.900 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.707 3.293 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.827 5.827 13 C -0.043 4.043 14 S 2.796 3.204 15 O -0.977 6.977 16 O -0.969 6.969 17 N -0.879 5.879 18 C -0.002 4.002 19 C 0.016 3.984 20 H 0.100 0.900 21 C -0.189 4.189 22 C -0.193 4.193 23 C -0.028 4.028 24 O -0.294 6.294 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.249 0.751 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.214 -3.772 -10.535 14.496 hybrid contribution -0.078 0.622 0.949 1.137 sum 9.137 -3.150 -9.586 13.612 Atomic orbital electron populations 1.22413 0.98832 1.01328 0.99161 1.19082 0.90976 0.93462 0.83138 0.92517 1.21197 1.32580 1.14388 0.88306 0.89962 1.24886 0.95566 0.96556 0.95746 1.69871 1.45279 1.40089 0.97978 0.87007 0.80775 0.83951 0.77523 1.20311 1.22218 1.18592 1.57490 1.64822 1.21557 1.38868 1.21273 0.99165 0.81697 1.02212 1.01652 0.72544 0.72957 0.73276 1.93548 1.86058 1.76320 1.41812 1.93580 1.83830 1.32566 1.86907 1.55766 1.31798 1.14888 1.85467 1.21390 0.91914 0.84319 1.02546 1.23228 0.93224 0.91476 0.90479 0.90033 1.23285 0.95341 0.97150 1.03135 1.23110 0.97649 0.98507 1.00031 1.23115 0.86451 0.94778 0.98419 1.88488 1.35314 1.55818 1.49736 0.94693 0.92293 0.93343 0.92469 0.93716 0.92968 0.89709 0.75111 0.89969 0.90370 0.89256 0.89850 0.90048 0.90467 0.91459 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 8.67 37.16 0.32 -3.08 16 2 C 0.24 5.47 2.22 -69.08 -0.15 5.32 16 3 H 0.06 1.39 5.98 -51.93 -0.31 1.08 16 4 C -0.53 -13.53 8.57 -34.44 -0.30 -13.83 16 5 H 0.08 2.22 7.58 -52.49 -0.40 1.83 16 6 C 0.08 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.89 -25.72 13.96 55.43 0.77 -24.95 16 8 Si 0.88 21.15 24.37 -169.99 -4.14 17.01 16 9 H -0.28 -6.45 6.86 56.52 0.39 -6.06 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 12 N -0.99 -19.54 3.12 -115.84 -0.36 -19.90 16 13 C 0.10 1.74 9.28 59.85 0.56 2.30 16 14 S 2.79 53.76 6.09 -107.50 -0.66 53.10 16 15 O -0.99 -20.17 16.68 -57.17 -0.95 -21.12 16 16 O -0.98 -21.89 16.70 -57.17 -0.95 -22.84 16 17 N -1.12 -18.23 5.97 -10.61 -0.06 -18.30 16 18 C 0.13 1.74 5.98 -4.04 -0.02 1.71 16 19 C 0.07 0.90 3.53 -25.70 -0.09 0.81 16 20 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 21 C -0.15 -1.38 6.57 -24.48 -0.16 -1.54 16 22 C -0.16 -1.23 7.02 -24.78 -0.17 -1.40 16 23 C 0.05 0.48 7.79 37.88 0.30 0.77 16 24 O -0.37 -4.99 10.95 -35.23 -0.39 -5.38 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.18 7.67 -51.93 -0.40 0.79 16 27 H 0.05 1.08 3.25 -51.93 -0.17 0.91 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.76 7.79 -51.93 -0.40 0.35 16 31 H 0.08 1.49 7.02 -51.93 -0.36 1.13 16 32 H 0.42 6.35 8.65 -34.47 -0.30 6.05 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.07 7.75 -51.93 -0.40 0.67 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 328.77 15.07 4.95 4.95 Total: -1.00 -32.65 328.77 -7.76 -40.41 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.15 Total: 3.99 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 0.18 Total: -6.98 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 0.35 Total: -63.14 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -2.29 Total: -49.34 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.14 Total: 17.01 kcal Atomic # 16 Polarization: 53.76 SS G_CDS: -0.66 Total: 53.10 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.65 -7.76 -40.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407978027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.311 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds