Wall clock time and date at job start Tue Mar 31 2020 03:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.46506 * 119.99453 * 300.00085 * 12 2 1 14 14 S 1.65591 * 120.00485 * 119.99872 * 12 2 1 15 15 O 1.42105 * 106.40740 * 203.54008 * 14 12 2 16 16 O 1.42103 * 106.40291 * 336.46194 * 14 12 2 17 17 N 1.65608 * 107.21947 * 90.00027 * 14 12 2 18 18 C 1.46497 * 119.99590 * 65.00148 * 17 14 12 19 19 C 1.53004 * 109.46901 * 165.00529 * 18 17 14 20 20 H 1.08999 * 110.27779 * 60.63568 * 19 18 17 21 21 C 1.54945 * 110.30936 * 182.83206 * 19 18 17 22 22 C 1.55314 * 100.94195 * 155.35559 * 21 19 18 23 23 C 1.54378 * 102.25179 * 325.86612 * 22 21 19 24 24 O 1.43242 * 107.58928 * 21.35485 * 23 22 21 25 25 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 28 28 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47497 * 90.00369 * 13 12 2 30 30 H 1.09004 * 109.46702 * 209.99812 * 13 12 2 31 31 H 1.08998 * 109.47259 * 329.99392 * 13 12 2 32 32 H 0.96998 * 119.99639 * 245.00112 * 17 14 12 33 33 H 1.09001 * 109.47033 * 284.99777 * 18 17 14 34 34 H 1.09000 * 109.47554 * 45.00071 * 18 17 14 35 35 H 1.08997 * 111.12678 * 273.27510 * 21 19 18 36 36 H 1.09001 * 111.12593 * 37.43766 * 21 19 18 37 37 H 1.08996 * 110.84405 * 207.67445 * 22 21 19 38 38 H 1.09001 * 111.02141 * 84.13580 * 22 21 19 39 39 H 1.09000 * 109.83181 * 261.84262 * 23 22 21 40 40 H 1.09000 * 109.90580 * 140.91294 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 7 2.0183 -0.6904 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 16 2.9703 0.1143 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6904 1.4975 -2.1192 17 7 4.5438 -0.1041 -1.8181 18 6 5.1357 -1.4440 -1.8417 19 6 6.6577 -1.3311 -1.7337 20 1 6.9350 -0.8460 -0.7978 21 6 7.3091 -2.7338 -1.8283 22 6 8.7278 -2.3659 -2.3422 23 6 8.4422 -1.1516 -3.2516 24 8 7.1837 -0.5971 -2.8508 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8912 -0.5369 4.4374 29 1 0.7375 -2.1442 -1.9995 30 1 2.4628 -2.5817 -1.9866 31 1 1.5295 -2.5968 -0.4710 32 1 5.0733 0.6551 -1.5282 33 1 4.7539 -2.0247 -1.0020 34 1 4.8735 -1.9406 -2.7760 35 1 7.3573 -3.2114 -0.8498 36 1 6.7827 -3.3638 -2.5454 37 1 9.1577 -3.1873 -2.9154 38 1 9.3825 -2.0868 -1.5167 39 1 8.3902 -1.4727 -4.2919 40 1 9.2289 -0.4064 -3.1337 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407978027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:06 Heat of formation + Delta-G solvation = -143.914652 kcal Electronic energy + Delta-G solvation = -22939.233849 eV Core-core repulsion = 19494.022226 eV Total energy + Delta-G solvation = -3445.211622 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.42466 -38.38076 -38.06120 -36.92485 -36.08136 -34.49678 -33.05368 -31.78725 -30.70527 -27.28259 -26.95033 -26.05644 -22.74769 -22.51990 -22.29771 -20.26742 -19.05578 -18.55264 -18.35998 -17.78889 -17.45032 -17.03601 -16.54935 -16.04155 -15.54751 -15.27296 -14.91631 -14.73667 -14.48088 -14.18657 -13.98472 -13.81969 -13.62805 -13.52894 -13.40379 -13.19245 -13.12317 -12.94429 -12.71427 -12.63312 -12.25910 -12.17742 -11.99521 -11.90681 -11.67260 -11.45966 -11.33396 -10.73053 -10.50498 -10.40790 -9.74899 -8.27728 -6.30273 -0.32542 1.31856 1.41062 1.48202 1.96430 2.33229 2.54810 2.89572 3.07549 3.38249 3.58247 3.76796 3.97654 4.02059 4.16668 4.21868 4.37427 4.46516 4.52373 4.62611 4.65768 4.68218 4.82040 4.85087 4.88276 4.91652 4.96341 5.04300 5.08263 5.13913 5.25726 5.28849 5.49404 5.54827 5.81977 6.06207 6.17001 6.36272 6.74168 7.34762 8.87226 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.005358 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.618924 B = 5224.711253 C = 5925.457505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.239 3.761 3 H 0.042 0.958 4 C -0.513 4.513 5 H 0.062 0.938 6 C 0.028 3.972 7 N -0.936 5.936 8 Si 0.923 3.077 9 H -0.262 1.262 10 H -0.298 1.298 11 H -0.257 1.257 12 N -0.990 5.990 13 C 0.096 3.904 14 S 2.802 3.198 15 O -1.003 7.003 16 O -1.016 7.016 17 N -1.116 6.116 18 C 0.118 3.882 19 C 0.072 3.928 20 H 0.079 0.921 21 C -0.148 4.148 22 C -0.147 4.147 23 C 0.039 3.961 24 O -0.403 6.403 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.266 0.734 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.419 0.581 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.993 -4.815 -10.760 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.133 3.867 3 H 0.060 0.940 4 C -0.552 4.552 5 H 0.080 0.920 6 C -0.171 4.171 7 N -0.576 5.576 8 Si 0.751 3.249 9 H -0.188 1.188 10 H -0.226 1.226 11 H -0.182 1.182 12 N -0.831 5.831 13 C -0.049 4.049 14 S 2.810 3.190 15 O -0.986 6.986 16 O -1.000 7.000 17 N -0.878 5.878 18 C -0.008 4.008 19 C 0.013 3.987 20 H 0.097 0.903 21 C -0.186 4.186 22 C -0.184 4.184 23 C -0.038 4.038 24 O -0.323 6.323 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.254 0.746 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.475 -4.331 -11.524 15.535 hybrid contribution -0.063 0.731 1.170 1.381 sum 9.412 -3.600 -10.354 14.448 Atomic orbital electron populations 1.22376 0.97364 1.02349 0.99744 1.18867 0.92147 0.92569 0.83086 0.93982 1.21369 1.31185 1.13316 0.89340 0.91994 1.25514 0.96965 0.98947 0.95687 1.69977 1.47266 1.41879 0.98464 0.86260 0.80161 0.81226 0.77270 1.18780 1.22583 1.18150 1.57424 1.65330 1.22642 1.37672 1.21471 1.00923 0.80171 1.02336 1.01092 0.72869 0.72003 0.73011 1.93532 1.86505 1.76313 1.42254 1.93531 1.84654 1.34539 1.87275 1.55574 1.30757 1.16236 1.85226 1.21616 0.93416 0.82946 1.02812 1.23250 0.91940 0.93337 0.90168 0.90340 1.23309 0.95840 0.95388 1.04080 1.23105 0.96993 0.98256 1.00077 1.23344 0.85365 0.95846 0.99208 1.88452 1.36932 1.56826 1.50075 0.92796 0.91139 0.94022 0.92500 0.92124 0.90652 0.90616 0.74602 0.89680 0.90043 0.88154 0.89265 0.87991 0.89711 0.90808 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.54 8.67 71.98 0.62 -5.92 16 2 C 0.24 10.76 2.22 44.24 0.10 10.86 16 3 H 0.04 2.04 5.98 -2.38 -0.01 2.02 16 4 C -0.51 -26.32 8.57 25.60 0.22 -26.10 16 5 H 0.06 3.38 7.58 -2.91 -0.02 3.35 16 6 C 0.03 1.51 5.45 84.65 0.46 1.98 16 7 N -0.94 -54.31 13.96 21.45 0.30 -54.01 16 8 Si 0.92 43.00 24.37 68.60 1.67 44.68 16 9 H -0.26 -11.52 6.86 99.48 0.68 -10.84 16 10 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 11 H -0.26 -11.71 6.54 99.48 0.65 -11.06 16 12 N -0.99 -38.07 3.12 -520.42 -1.62 -39.69 16 13 C 0.10 3.10 9.28 127.77 1.19 4.28 16 14 S 2.80 105.65 6.09 -56.49 -0.34 105.30 16 15 O -1.00 -39.28 16.68 -128.00 -2.14 -41.41 16 16 O -1.02 -44.71 16.70 -128.00 -2.14 -46.85 16 17 N -1.12 -35.75 5.97 -187.49 -1.12 -36.87 16 18 C 0.12 3.17 5.98 86.38 0.52 3.68 16 19 C 0.07 1.65 3.53 31.26 0.11 1.76 16 20 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 21 C -0.15 -2.40 6.57 32.05 0.21 -2.19 16 22 C -0.15 -1.95 7.02 31.86 0.22 -1.73 16 23 C 0.04 0.69 7.79 72.45 0.56 1.25 16 24 O -0.40 -10.35 10.95 -148.98 -1.63 -11.99 16 25 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.07 2.69 7.67 -2.39 -0.02 2.67 16 27 H 0.04 1.76 3.25 -2.38 -0.01 1.75 16 28 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 30 H 0.07 2.05 7.79 -2.39 -0.02 2.03 16 31 H 0.08 2.58 7.02 -2.39 -0.02 2.56 16 32 H 0.42 12.77 8.65 -96.75 -0.84 11.93 16 33 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.08 2.12 7.75 -2.39 -0.02 2.10 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.34 8.06 -2.39 -0.02 1.32 16 37 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -68.45 328.77 -2.69 -71.13 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.12 Total: 21.82 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 4.21 Total: -12.12 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -2.44 Total: -130.57 kcal Atomic # 8 Polarization: -94.35 SS G_CDS: -5.90 Total: -100.25 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.67 Total: 44.68 kcal Atomic # 16 Polarization: 105.65 SS G_CDS: -0.34 Total: 105.30 kcal Total: -68.45 -2.69 -71.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407978027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.783 kcal (2) G-P(sol) polarization free energy of solvation -68.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds