Wall clock time and date at job start Tue Mar 31 2020 03:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.99740 * 2 1 4 4 C 1.54333 * 109.77691 * 121.16676 * 2 1 3 5 5 H 1.09001 * 110.51612 * 215.80994 * 4 2 1 6 6 C 1.53001 * 111.00162 * 338.95555 * 4 2 1 7 7 O 1.42899 * 109.46962 * 180.23310 * 6 4 2 8 8 C 1.55158 * 103.02121 * 97.49410 * 4 2 1 9 9 C 1.54910 * 101.57877 * 35.30834 * 8 4 2 10 10 N 1.47023 * 109.88265 * 238.90484 * 2 1 3 11 11 S 1.65603 * 125.64616 * 59.56142 * 10 2 1 12 12 O 1.42100 * 106.40301 * 342.21404 * 11 10 2 13 13 O 1.42099 * 106.40318 * 209.29067 * 11 10 2 14 14 N 1.65600 * 107.21513 * 95.75247 * 11 10 2 15 15 C 1.46494 * 120.00309 * 274.95918 * 14 11 10 16 16 C 1.46504 * 119.99843 * 94.96721 * 14 11 10 17 17 C 1.50698 * 109.47215 * 94.88710 * 16 14 11 18 18 H 1.07999 * 119.99935 * 359.97438 * 17 16 14 19 19 C 1.37875 * 119.99881 * 180.02562 * 17 16 14 20 20 N 1.31522 * 120.00171 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99960 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47050 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46946 * 120.00098 * 21 19 17 24 24 H 1.48505 * 109.46797 * 239.99562 * 21 19 17 25 25 H 1.08993 * 109.47514 * 175.64428 * 1 2 3 26 26 H 1.09000 * 109.47204 * 295.65594 * 1 2 3 27 27 H 1.09008 * 109.46636 * 55.64781 * 1 2 3 28 28 H 1.08998 * 109.47084 * 300.23581 * 6 4 2 29 29 H 1.09004 * 109.47271 * 60.23918 * 6 4 2 30 30 H 0.96697 * 113.99950 * 179.97438 * 7 6 4 31 31 H 1.08996 * 111.00575 * 277.23379 * 8 4 2 32 32 H 1.08997 * 111.03522 * 153.38981 * 8 4 2 33 33 H 1.09007 * 110.36720 * 204.14964 * 9 8 4 34 34 H 1.09005 * 110.36992 * 81.82913 * 9 8 4 35 35 H 1.09002 * 109.47428 * 270.00612 * 15 14 11 36 36 H 1.09000 * 109.46824 * 30.00403 * 15 14 11 37 37 H 1.09002 * 109.47497 * 149.99835 * 15 14 11 38 38 H 1.08999 * 109.46941 * 334.88148 * 16 14 11 39 39 H 1.09002 * 109.46941 * 214.88839 * 16 14 11 40 40 H 0.96998 * 119.99638 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0522 -0.7516 1.2427 5 1 2.9606 -0.2816 1.6197 6 6 0.9833 -0.8132 2.3356 7 8 1.5020 -1.5097 3.4705 8 6 2.3561 -2.1698 0.6914 9 6 2.8613 -1.8465 -0.7368 10 7 2.0300 -0.7141 -1.1839 11 16 1.7171 -0.3090 -2.7589 12 8 0.5846 0.5489 -2.7351 13 8 1.7593 -1.5202 -3.5007 14 7 2.9884 0.6094 -3.2906 15 6 3.0046 2.0528 -3.0404 16 6 4.0969 -0.0215 -4.0114 17 6 3.8594 0.0901 -5.4953 18 1 2.9713 0.5814 -5.8646 19 6 4.7753 -0.4360 -6.3815 20 7 5.8565 -1.0348 -5.9318 21 14 4.4805 -0.2984 -8.2210 22 1 3.2007 0.4139 -8.4653 23 1 5.5955 0.4577 -8.8458 24 1 4.4109 -1.6581 -8.8142 25 1 -0.3634 -1.0246 -0.0780 26 1 -0.3633 0.4449 0.9263 27 1 -0.3633 0.5799 -0.8485 28 1 0.7031 0.1990 2.6273 29 1 0.1063 -1.3382 1.9569 30 1 0.8770 -1.5865 4.2042 31 1 1.4521 -2.7778 0.6578 32 1 3.1325 -2.6598 1.2788 33 1 2.7178 -2.7049 -1.3933 34 1 3.9124 -1.5589 -0.7115 35 1 2.5207 2.5706 -3.8685 36 1 2.4693 2.2671 -2.1154 37 1 4.0357 2.3946 -2.9509 38 1 4.1605 -1.0730 -3.7315 39 1 5.0299 0.4800 -3.7540 40 1 6.0093 -1.1066 -4.9766 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487359684.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:46 Heat of formation + Delta-G solvation = -123.795278 kcal Electronic energy + Delta-G solvation = -23136.070395 eV Core-core repulsion = 19691.731214 eV Total energy + Delta-G solvation = -3444.339181 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.44900 -36.73093 -36.61084 -35.66434 -35.22856 -32.62495 -31.91849 -31.08393 -27.49855 -26.58686 -24.86416 -24.72839 -22.49896 -22.11434 -19.77844 -18.53256 -17.86355 -17.52301 -16.93259 -16.62859 -15.93731 -15.39112 -14.83340 -14.33559 -14.21245 -13.75146 -13.70835 -13.45681 -13.20824 -12.85298 -12.78438 -12.50941 -12.38017 -12.27387 -11.89627 -11.68089 -11.39982 -11.28244 -11.15511 -11.09339 -11.01992 -10.76565 -10.69045 -10.58018 -10.48507 -10.12627 -10.10675 -9.35218 -8.92997 -8.38508 -7.95981 -6.40485 -4.12159 1.06455 3.39622 3.45212 3.49981 3.63958 3.83268 4.00127 4.43973 4.49880 4.54082 4.77257 4.91692 5.07991 5.14072 5.17792 5.27395 5.29172 5.32212 5.40933 5.50301 5.57753 5.72210 5.79095 5.89559 5.95444 5.98873 6.11766 6.15528 6.29571 6.38195 6.41215 6.57526 6.88816 7.16196 7.34228 7.43961 8.00053 8.43944 8.79093 9.57096 10.97705 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031138 B = 0.004575 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.000888 B = 6119.122272 C = 6433.146654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.073 0.927 4 C -0.095 4.095 5 H 0.089 0.911 6 C 0.085 3.915 7 O -0.574 6.574 8 C -0.114 4.114 9 C 0.114 3.886 10 N -1.019 6.019 11 S 2.795 3.205 12 O -0.987 6.987 13 O -0.960 6.960 14 N -0.994 5.994 15 C 0.111 3.889 16 C 0.246 3.754 17 C -0.609 4.609 18 H 0.055 0.945 19 C 0.021 3.979 20 N -0.910 5.910 21 Si 1.075 2.925 22 H -0.288 1.288 23 H -0.286 1.286 24 H -0.285 1.285 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.378 0.622 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.028 0.972 39 H 0.024 0.976 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.226 2.022 18.057 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.053 3.947 3 H 0.091 0.909 4 C -0.115 4.115 5 H 0.108 0.892 6 C 0.007 3.993 7 O -0.379 6.379 8 C -0.153 4.153 9 C -0.012 4.012 10 N -0.858 5.858 11 S 2.805 3.195 12 O -0.971 6.971 13 O -0.944 6.944 14 N -0.836 5.836 15 C -0.036 4.036 16 C 0.124 3.876 17 C -0.649 4.649 18 H 0.073 0.927 19 C -0.183 4.183 20 N -0.546 5.546 21 Si 0.903 3.097 22 H -0.214 1.214 23 H -0.212 1.212 24 H -0.211 1.211 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.225 0.775 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.824 1.388 15.568 17.479 hybrid contribution -0.737 0.638 2.029 2.251 sum -8.561 2.026 17.597 19.674 Atomic orbital electron populations 1.22636 0.95064 1.03202 1.03980 1.21080 0.94146 0.95187 0.84267 0.90864 1.22195 0.98918 0.97186 0.93173 0.89240 1.22299 0.95602 0.95399 0.85996 1.86468 1.44753 1.79332 1.27344 1.22723 1.01968 0.95883 0.94725 1.22030 0.94443 0.88864 0.95818 1.59515 1.64108 1.39671 1.22490 1.01610 0.73170 0.73378 0.71364 1.93499 1.48885 1.68208 1.86539 1.93615 1.86598 1.45874 1.68293 1.57588 1.40770 1.16217 1.68979 1.21189 1.02078 0.80981 0.99346 1.19148 0.83943 0.92252 0.92292 1.22359 1.09943 1.41386 0.91176 0.92699 1.25824 0.92901 0.93079 1.06516 1.70766 1.26563 1.40510 1.16767 0.83465 0.75401 0.76698 0.74119 1.21431 1.21250 1.21095 0.92124 0.91471 0.89216 0.93349 0.92800 0.77511 0.90788 0.89831 0.89857 0.91525 0.92944 0.93154 0.91614 0.95385 0.95826 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 7.84 37.16 0.29 -1.96 16 2 C 0.16 1.99 3.61 -66.95 -0.24 1.75 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.09 -1.00 3.14 -88.78 -0.28 -1.27 16 5 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 6 C 0.08 0.71 5.15 37.16 0.19 0.91 16 7 O -0.57 -4.91 13.51 -35.23 -0.48 -5.39 16 8 C -0.11 -1.28 6.39 -24.58 -0.16 -1.43 16 9 C 0.11 1.60 7.14 -2.53 -0.02 1.58 16 10 N -1.02 -16.01 3.47 -104.41 -0.36 -16.37 16 11 S 2.79 57.23 6.18 -107.50 -0.66 56.57 16 12 O -0.99 -20.51 14.53 -57.17 -0.83 -21.34 16 13 O -0.96 -23.62 16.37 -57.17 -0.94 -24.56 16 14 N -0.99 -21.27 3.23 -123.05 -0.40 -21.67 16 15 C 0.11 1.95 10.33 59.84 0.62 2.57 16 16 C 0.25 6.26 4.45 -5.19 -0.02 6.24 16 17 C -0.61 -17.62 9.38 -34.44 -0.32 -17.95 16 18 H 0.05 1.62 7.81 -52.49 -0.41 1.21 16 19 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 20 N -0.91 -27.52 13.65 55.43 0.76 -26.77 16 21 Si 1.08 26.00 29.90 -169.99 -5.08 20.92 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.06 0.71 7.74 -51.93 -0.40 0.31 16 26 H 0.07 0.59 6.44 -51.93 -0.33 0.25 16 27 H 0.09 1.28 5.92 -51.92 -0.31 0.97 16 28 H 0.05 0.34 7.56 -51.93 -0.39 -0.05 16 29 H 0.05 0.43 6.73 -51.93 -0.35 0.08 16 30 H 0.38 1.51 9.12 45.56 0.42 1.93 16 31 H 0.07 0.81 8.02 -51.93 -0.42 0.39 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.26 7.82 -51.93 -0.41 0.85 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.73 7.92 -51.93 -0.41 0.32 16 37 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16 38 H 0.03 0.75 7.34 -51.93 -0.38 0.37 16 39 H 0.02 0.60 7.83 -51.93 -0.41 0.19 16 40 H 0.27 7.92 7.22 -40.82 -0.29 7.63 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -35.64 331.18 -8.46 -44.10 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.42 Total: -1.45 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -0.04 Total: -9.04 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: 0.00 Total: -64.80 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -2.24 Total: -51.29 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.08 Total: 20.92 kcal Atomic # 16 Polarization: 57.23 SS G_CDS: -0.66 Total: 56.57 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.64 -8.46 -44.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487359684.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.699 kcal (2) G-P(sol) polarization free energy of solvation -35.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds