Wall clock time and date at job start Tue Mar 31 2020 03:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.99740 * 2 1 4 4 C 1.54333 * 109.77691 * 121.16676 * 2 1 3 5 5 H 1.09001 * 110.51612 * 215.80994 * 4 2 1 6 6 C 1.53001 * 111.00162 * 338.95555 * 4 2 1 7 7 O 1.42899 * 109.46962 * 180.23310 * 6 4 2 8 8 C 1.55158 * 103.02121 * 97.49410 * 4 2 1 9 9 C 1.54910 * 101.57877 * 35.30834 * 8 4 2 10 10 N 1.47023 * 109.88265 * 238.90484 * 2 1 3 11 11 S 1.65603 * 125.64616 * 59.56142 * 10 2 1 12 12 O 1.42100 * 106.40301 * 342.21404 * 11 10 2 13 13 O 1.42099 * 106.40318 * 209.29067 * 11 10 2 14 14 N 1.65600 * 107.21513 * 95.75247 * 11 10 2 15 15 C 1.46494 * 120.00309 * 274.95918 * 14 11 10 16 16 C 1.46504 * 119.99843 * 94.96721 * 14 11 10 17 17 C 1.50698 * 109.47215 * 94.88710 * 16 14 11 18 18 H 1.07999 * 119.99935 * 359.97438 * 17 16 14 19 19 C 1.37875 * 119.99881 * 180.02562 * 17 16 14 20 20 N 1.31522 * 120.00171 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99960 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47050 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46946 * 120.00098 * 21 19 17 24 24 H 1.48505 * 109.46797 * 239.99562 * 21 19 17 25 25 H 1.08993 * 109.47514 * 175.64428 * 1 2 3 26 26 H 1.09000 * 109.47204 * 295.65594 * 1 2 3 27 27 H 1.09008 * 109.46636 * 55.64781 * 1 2 3 28 28 H 1.08998 * 109.47084 * 300.23581 * 6 4 2 29 29 H 1.09004 * 109.47271 * 60.23918 * 6 4 2 30 30 H 0.96697 * 113.99950 * 179.97438 * 7 6 4 31 31 H 1.08996 * 111.00575 * 277.23379 * 8 4 2 32 32 H 1.08997 * 111.03522 * 153.38981 * 8 4 2 33 33 H 1.09007 * 110.36720 * 204.14964 * 9 8 4 34 34 H 1.09005 * 110.36992 * 81.82913 * 9 8 4 35 35 H 1.09002 * 109.47428 * 270.00612 * 15 14 11 36 36 H 1.09000 * 109.46824 * 30.00403 * 15 14 11 37 37 H 1.09002 * 109.47497 * 149.99835 * 15 14 11 38 38 H 1.08999 * 109.46941 * 334.88148 * 16 14 11 39 39 H 1.09002 * 109.46941 * 214.88839 * 16 14 11 40 40 H 0.96998 * 119.99638 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0522 -0.7516 1.2427 5 1 2.9606 -0.2816 1.6197 6 6 0.9833 -0.8132 2.3356 7 8 1.5020 -1.5097 3.4705 8 6 2.3561 -2.1698 0.6914 9 6 2.8613 -1.8465 -0.7368 10 7 2.0300 -0.7141 -1.1839 11 16 1.7171 -0.3090 -2.7589 12 8 0.5846 0.5489 -2.7351 13 8 1.7593 -1.5202 -3.5007 14 7 2.9884 0.6094 -3.2906 15 6 3.0046 2.0528 -3.0404 16 6 4.0969 -0.0215 -4.0114 17 6 3.8594 0.0901 -5.4953 18 1 2.9713 0.5814 -5.8646 19 6 4.7753 -0.4360 -6.3815 20 7 5.8565 -1.0348 -5.9318 21 14 4.4805 -0.2984 -8.2210 22 1 3.2007 0.4139 -8.4653 23 1 5.5955 0.4577 -8.8458 24 1 4.4109 -1.6581 -8.8142 25 1 -0.3634 -1.0246 -0.0780 26 1 -0.3633 0.4449 0.9263 27 1 -0.3633 0.5799 -0.8485 28 1 0.7031 0.1990 2.6273 29 1 0.1063 -1.3382 1.9569 30 1 0.8770 -1.5865 4.2042 31 1 1.4521 -2.7778 0.6578 32 1 3.1325 -2.6598 1.2788 33 1 2.7178 -2.7049 -1.3933 34 1 3.9124 -1.5589 -0.7115 35 1 2.5207 2.5706 -3.8685 36 1 2.4693 2.2671 -2.1154 37 1 4.0357 2.3946 -2.9509 38 1 4.1605 -1.0730 -3.7315 39 1 5.0299 0.4800 -3.7540 40 1 6.0093 -1.1066 -4.9766 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487359684.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:46 Heat of formation + Delta-G solvation = -152.742349 kcal Electronic energy + Delta-G solvation = -23137.325634 eV Core-core repulsion = 19691.731214 eV Total energy + Delta-G solvation = -3445.594420 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40774 -38.43766 -37.47588 -37.30435 -36.96698 -34.73507 -32.92250 -32.08535 -29.39360 -27.51179 -26.65119 -25.61802 -24.49231 -23.25579 -20.76233 -20.01015 -19.28432 -18.74466 -18.41646 -18.27951 -17.17100 -16.77174 -15.91328 -15.74788 -15.62090 -15.42442 -14.98324 -14.83823 -14.44535 -14.16312 -14.09485 -13.87841 -13.72881 -13.43997 -13.34260 -13.27212 -13.09684 -12.97614 -12.89051 -12.45631 -12.42662 -12.21170 -11.97285 -11.90685 -11.65572 -11.49621 -11.32483 -10.74381 -10.60195 -10.15917 -9.82660 -8.70500 -6.44439 -0.52617 1.49570 1.59080 1.76014 1.91160 2.44194 2.53559 3.01987 3.09780 3.30993 3.57005 3.66816 3.89323 4.01849 4.15487 4.30419 4.34687 4.41887 4.50122 4.53228 4.59657 4.60847 4.69114 4.75619 4.78879 4.87898 4.91551 4.96384 5.04268 5.17754 5.21549 5.25356 5.39491 5.45044 5.71377 5.81623 6.15786 6.49238 6.98184 7.32232 8.67280 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031138 B = 0.004575 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.000888 B = 6119.122272 C = 6433.146654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.149 3.851 3 H 0.086 0.914 4 C -0.088 4.088 5 H 0.094 0.906 6 C 0.088 3.912 7 O -0.591 6.591 8 C -0.105 4.105 9 C 0.105 3.895 10 N -1.015 6.015 11 S 2.807 3.193 12 O -0.993 6.993 13 O -1.010 7.010 14 N -1.003 6.003 15 C 0.102 3.898 16 C 0.258 3.742 17 C -0.628 4.628 18 H 0.042 0.958 19 C -0.027 4.027 20 N -0.929 5.929 21 Si 1.115 2.885 22 H -0.278 1.278 23 H -0.268 1.268 24 H -0.278 1.278 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.398 0.602 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.010 0.990 39 H 0.024 0.976 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.856 2.862 19.829 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.044 3.956 3 H 0.104 0.896 4 C -0.108 4.108 5 H 0.113 0.887 6 C 0.010 3.990 7 O -0.399 6.399 8 C -0.144 4.144 9 C -0.020 4.020 10 N -0.856 5.856 11 S 2.818 3.182 12 O -0.977 6.977 13 O -0.994 6.994 14 N -0.843 5.843 15 C -0.044 4.044 16 C 0.134 3.866 17 C -0.667 4.667 18 H 0.060 0.940 19 C -0.226 4.226 20 N -0.565 5.565 21 Si 0.936 3.064 22 H -0.203 1.203 23 H -0.193 1.193 24 H -0.204 1.204 25 H 0.077 0.923 26 H 0.122 0.878 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.248 0.752 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.028 0.972 39 H 0.042 0.958 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.475 2.256 17.371 19.459 hybrid contribution -0.579 0.380 1.623 1.764 sum -9.053 2.636 18.993 21.205 Atomic orbital electron populations 1.22644 0.94462 1.03001 1.04728 1.21441 0.94735 0.95816 0.83620 0.89600 1.22171 0.99910 0.95885 0.92868 0.88732 1.22245 0.94594 0.96696 0.85485 1.86408 1.46055 1.79398 1.28065 1.22699 1.02402 0.96793 0.92530 1.22221 0.94638 0.87726 0.97450 1.59112 1.64355 1.40346 1.21805 1.00938 0.72859 0.72373 0.72028 1.93489 1.49003 1.68144 1.87092 1.93546 1.87211 1.47996 1.70648 1.57548 1.39534 1.17925 1.69327 1.21441 1.03429 0.78773 1.00716 1.18758 0.85214 0.91575 0.91099 1.22701 1.09468 1.41201 0.93292 0.93957 1.27230 0.92394 0.92263 1.10696 1.70871 1.27482 1.41815 1.16376 0.82971 0.76373 0.77368 0.69649 1.20311 1.19255 1.20406 0.92293 0.87825 0.91849 0.91368 0.92249 0.75176 0.90443 0.88491 0.91732 0.91184 0.93720 0.89706 0.90402 0.97236 0.95806 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.05 7.84 71.98 0.56 -3.49 16 2 C 0.15 3.39 3.61 45.35 0.16 3.55 16 3 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 4 C -0.09 -1.60 3.14 -9.60 -0.03 -1.63 16 5 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 6 C 0.09 1.14 5.15 71.98 0.37 1.51 16 7 O -0.59 -8.03 13.51 -148.98 -2.01 -10.05 16 8 C -0.11 -2.16 6.39 31.99 0.20 -1.96 16 9 C 0.10 2.93 7.14 86.86 0.62 3.55 16 10 N -1.01 -31.32 3.47 -484.24 -1.68 -33.00 16 11 S 2.81 116.41 6.18 -56.49 -0.35 116.06 16 12 O -0.99 -41.16 14.53 -128.00 -1.86 -43.02 16 13 O -1.01 -51.59 16.37 -128.00 -2.10 -53.69 16 14 N -1.00 -43.27 3.23 -543.23 -1.75 -45.02 16 15 C 0.10 3.50 10.33 127.77 1.32 4.82 16 16 C 0.26 13.44 4.45 85.63 0.38 13.82 16 17 C -0.63 -37.01 9.38 25.60 0.24 -36.77 16 18 H 0.04 2.54 7.81 -2.91 -0.02 2.52 16 19 C -0.03 -1.57 5.46 84.65 0.46 -1.11 16 20 N -0.93 -56.92 13.65 21.45 0.29 -56.62 16 21 Si 1.11 52.15 29.90 68.60 2.05 54.20 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 25 H 0.06 1.27 7.74 -2.39 -0.02 1.25 16 26 H 0.10 1.42 6.44 -2.39 -0.02 1.40 16 27 H 0.06 1.72 5.92 -2.38 -0.01 1.70 16 28 H 0.07 0.65 7.56 -2.39 -0.02 0.63 16 29 H 0.06 0.72 6.73 -2.39 -0.02 0.71 16 30 H 0.40 1.78 9.12 -74.06 -0.68 1.11 16 31 H 0.08 1.55 8.02 -2.39 -0.02 1.53 16 32 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 2.03 7.82 -2.38 -0.02 2.01 16 34 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 2.30 7.92 -2.39 -0.02 2.28 16 37 H 0.08 2.46 7.94 -2.39 -0.02 2.45 16 38 H 0.01 0.54 7.34 -2.39 -0.02 0.52 16 39 H 0.02 1.24 7.83 -2.39 -0.02 1.22 16 40 H 0.26 15.78 7.22 -92.71 -0.67 15.11 16 Total: -1.00 -77.80 331.18 -2.65 -80.45 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.46 Total: 8.38 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 4.30 Total: -17.69 kcal Atomic # 7 Polarization: -131.50 SS G_CDS: -3.14 Total: -134.64 kcal Atomic # 8 Polarization: -100.79 SS G_CDS: -5.97 Total: -106.75 kcal Atomic # 14 Polarization: 52.15 SS G_CDS: 2.05 Total: 54.20 kcal Atomic # 16 Polarization: 116.41 SS G_CDS: -0.35 Total: 116.06 kcal Total: -77.80 -2.65 -80.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487359684.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.293 kcal (2) G-P(sol) polarization free energy of solvation -77.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds