Wall clock time and date at job start Tue Mar 31 2020 03:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.99758 * 2 1 4 4 C 1.54316 * 109.88595 * 121.10016 * 2 1 3 5 5 H 1.09002 * 110.72355 * 23.24951 * 4 2 1 6 6 N 1.46502 * 110.72235 * 259.97746 * 4 2 1 7 7 C 1.36937 * 120.00040 * 154.99884 * 6 4 2 8 8 H 1.08001 * 119.99972 * 0.02562 * 7 6 4 9 9 C 1.38810 * 119.99922 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00245 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00046 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47636 * 89.99369 * 11 9 7 13 13 H 1.48499 * 109.47240 * 209.99983 * 11 9 7 14 14 H 1.48500 * 109.46979 * 329.99403 * 11 9 7 15 15 C 1.55160 * 102.94268 * 141.61289 * 4 2 1 16 16 C 1.54910 * 101.58122 * 324.49825 * 15 4 2 17 17 N 1.47026 * 109.88236 * 238.91354 * 2 1 3 18 18 C 1.34771 * 125.65100 * 61.37105 * 17 2 1 19 19 O 1.21600 * 119.99973 * 0.02562 * 18 17 2 20 20 C 1.47575 * 120.00089 * 179.97438 * 18 17 2 21 21 C 1.38050 * 119.73108 * 179.97438 * 20 18 17 22 22 N 1.34875 * 119.95358 * 179.97438 * 21 20 18 23 23 H 0.96999 * 120.30627 * 180.02562 * 22 21 20 24 24 C 1.34949 * 119.37955 * 0.02562 * 22 21 20 25 25 O 1.21861 * 120.26911 * 180.02562 * 24 22 21 26 26 C 1.41784 * 119.46539 * 359.97438 * 24 22 21 27 27 N 1.30612 * 120.03239 * 359.74150 * 26 24 22 28 28 H 1.09007 * 109.46732 * 179.63893 * 1 2 3 29 29 H 1.08995 * 109.47241 * 299.62995 * 1 2 3 30 30 H 1.08999 * 109.47140 * 59.64203 * 1 2 3 31 31 H 0.97005 * 119.99736 * 334.99628 * 6 4 2 32 32 H 0.97001 * 119.99843 * 180.02562 * 10 9 7 33 33 H 1.08991 * 111.00600 * 82.57442 * 15 4 2 34 34 H 1.09004 * 111.00084 * 206.38888 * 15 4 2 35 35 H 1.09001 * 110.36852 * 278.17238 * 16 15 4 36 36 H 1.08998 * 110.36449 * 155.84885 * 16 15 4 37 37 H 1.08003 * 120.02071 * 0.02562 * 21 20 18 38 38 H 1.08000 * 119.98689 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 1.2426 5 1 1.3052 -1.4461 1.6181 6 7 2.4555 0.1959 2.2875 7 6 2.4583 -0.1948 3.5999 8 1 2.1655 -1.2001 3.8647 9 6 2.8383 0.7009 4.5899 10 7 2.8415 0.3252 5.8514 11 14 3.3453 2.4395 4.1319 12 1 2.1508 3.3217 4.1392 13 1 4.3374 2.9414 5.1163 14 1 3.9509 2.4375 2.7760 15 6 3.2877 -1.5142 0.6921 16 6 2.8146 -1.8792 -0.7371 17 7 2.0300 -0.7139 -1.1841 18 6 1.8037 -0.3642 -2.4658 19 8 1.1344 0.6190 -2.7187 20 6 2.3691 -1.1740 -3.5624 21 6 2.1334 -0.8110 -4.8733 22 7 2.6483 -1.5476 -5.8790 23 1 2.4862 -1.2970 -6.8019 24 6 3.3912 -2.6363 -5.5892 25 8 3.8647 -3.3131 -6.4851 26 6 3.6173 -2.9857 -4.2338 27 7 3.1126 -2.2536 -3.2771 28 1 -0.3633 -1.0277 -0.0065 29 1 -0.3633 0.5080 0.8932 30 1 -0.3633 0.5194 -0.8867 31 1 2.7188 1.0987 2.0496 32 1 3.1067 0.9513 6.5432 33 1 4.1654 -0.8688 0.6602 34 1 3.4857 -2.4107 1.2797 35 1 2.1887 -2.7713 -0.7132 36 1 3.6717 -2.0335 -1.3925 37 1 1.5376 0.0626 -5.0933 38 1 4.2108 -3.8550 -3.9922 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986745607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:16 Heat of formation + Delta-G solvation = 6.292043 kcal Electronic energy + Delta-G solvation = -23246.876206 eV Core-core repulsion = 19705.026834 eV Total energy + Delta-G solvation = -3541.849372 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.18170 -40.02982 -38.09985 -37.34518 -35.73825 -34.20826 -31.84444 -31.11397 -30.63838 -29.42927 -25.96150 -25.28588 -24.99337 -22.92404 -22.56703 -20.86379 -20.06999 -18.82258 -18.50121 -17.58621 -17.26164 -16.55299 -16.20815 -15.97030 -15.35040 -15.05158 -14.68228 -14.30723 -14.05186 -13.77814 -13.36474 -12.93651 -12.81605 -12.69984 -12.29033 -12.22674 -12.18364 -11.91186 -11.63094 -11.25193 -11.20454 -10.87457 -10.59335 -10.43510 -10.18806 -9.99103 -9.63195 -9.60576 -8.94450 -8.83507 -8.39551 -7.33180 -5.81733 -3.18709 0.01833 0.82870 2.01931 2.59964 2.96092 3.35930 3.38592 3.39236 3.44115 3.69822 3.76569 4.22592 4.51893 4.55394 4.76316 5.05544 5.06605 5.27676 5.37151 5.54610 5.57548 5.65662 5.66944 5.77351 5.86671 5.87923 6.01739 6.12897 6.31017 6.36726 6.52581 6.59188 6.60197 6.83654 7.02595 7.21070 7.63042 7.92685 8.13079 8.36846 9.13702 9.86258 10.04679 11.36109 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.030352 B = 0.003576 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.300210 B = 7828.608505 C = 8167.294019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 H 0.075 0.925 4 C 0.181 3.819 5 H 0.077 0.923 6 N -0.739 5.739 7 C -0.247 4.247 8 H 0.093 0.907 9 C 0.008 3.992 10 N -0.931 5.931 11 Si 0.882 3.118 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 C -0.159 4.159 16 C 0.101 3.899 17 N -0.587 5.587 18 C 0.597 3.403 19 O -0.550 6.550 20 C -0.067 4.067 21 C 0.173 3.827 22 N -0.586 5.586 23 H 0.425 0.575 24 C 0.477 3.523 25 O -0.524 6.524 26 C 0.039 3.961 27 N -0.364 5.364 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.362 0.638 32 H 0.260 0.740 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.191 0.809 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.270 -4.380 -22.999 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.019 3.981 3 H 0.093 0.907 4 C 0.070 3.930 5 H 0.095 0.905 6 N -0.380 5.380 7 C -0.376 4.376 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.578 5.578 11 Si 0.712 3.288 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.203 1.203 15 C -0.200 4.200 16 C -0.021 4.021 17 N -0.318 5.318 18 C 0.384 3.616 19 O -0.429 6.429 20 C -0.191 4.191 21 C 0.036 3.964 22 N -0.219 5.219 23 H 0.265 0.735 24 C 0.272 3.728 25 O -0.399 6.399 26 C -0.151 4.151 27 N -0.079 5.079 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.196 0.804 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.208 0.792 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.294 -4.486 -22.506 22.985 hybrid contribution 0.256 1.581 -1.410 2.134 sum -1.039 -2.905 -23.916 24.114 Atomic orbital electron populations 1.22062 0.94526 1.01999 1.02787 1.22028 0.94758 0.96698 0.84577 0.90652 1.21237 0.94175 0.91258 0.86374 0.90544 1.42701 1.80788 1.11184 1.03364 1.19039 1.38765 0.99060 0.80751 0.88967 1.24656 1.01290 0.97766 0.95068 1.69696 1.53992 1.35218 0.98921 0.86591 0.78468 0.86249 0.77463 1.20950 1.21680 1.20298 1.23592 1.00636 1.01872 0.93942 1.22716 0.95965 0.87253 0.96215 1.48271 1.50725 1.28631 1.04188 1.16792 0.80293 0.83491 0.81003 1.90794 1.41300 1.27542 1.83298 1.20461 1.07721 0.98955 0.91951 1.23194 0.91032 0.94475 0.87649 1.43685 1.42510 1.24362 1.11374 0.73493 1.18827 0.80068 0.80767 0.93095 1.91009 1.49683 1.50289 1.48932 1.24883 1.02635 1.01741 0.85868 1.68089 1.01982 1.01639 1.36194 0.92756 0.91002 0.91894 0.80419 0.92959 0.90995 0.90140 0.91686 0.88392 0.79244 0.78834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.10 37.16 0.34 -2.04 16 2 C 0.12 2.01 3.21 -66.96 -0.22 1.79 16 3 H 0.08 1.34 7.72 -51.93 -0.40 0.94 16 4 C 0.18 3.26 3.14 -66.10 -0.21 3.06 16 5 H 0.08 1.41 7.80 -51.93 -0.41 1.00 16 6 N -0.74 -16.62 5.03 -51.65 -0.26 -16.88 16 7 C -0.25 -6.64 10.44 -15.06 -0.16 -6.80 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 9 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 10 N -0.93 -28.53 13.97 55.49 0.78 -27.76 16 11 Si 0.88 21.63 27.74 -169.99 -4.71 16.92 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 15 C -0.16 -2.50 6.77 -24.58 -0.17 -2.67 16 16 C 0.10 1.32 5.94 -2.53 -0.02 1.31 16 17 N -0.59 -8.49 3.07 -164.22 -0.50 -8.99 16 18 C 0.60 8.22 7.61 -12.45 -0.09 8.12 16 19 O -0.55 -8.62 15.30 5.28 0.08 -8.54 16 20 C -0.07 -0.70 6.68 -83.11 -0.56 -1.26 16 21 C 0.17 1.19 10.77 -16.28 -0.18 1.02 16 22 N -0.59 -3.49 5.28 -14.20 -0.08 -3.57 16 23 H 0.43 1.30 8.92 -40.82 -0.36 0.93 16 24 C 0.48 4.21 7.74 -14.83 -0.11 4.10 16 25 O -0.52 -6.25 17.95 5.04 0.09 -6.16 16 26 C 0.04 0.32 11.23 -16.72 -0.19 0.14 16 27 N -0.36 -3.63 6.65 -9.34 -0.06 -3.69 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.97 6.86 -51.93 -0.36 0.61 16 31 H 0.36 8.17 5.43 -40.82 -0.22 7.95 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.18 5.85 -51.93 -0.30 0.88 16 37 H 0.19 0.90 7.58 -52.48 -0.40 0.50 16 38 H 0.19 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 319.13 15.07 4.81 4.81 Total: -1.00 -34.19 319.13 -6.08 -40.28 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -4.58 Total: 6.67 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -1.65 Total: 6.91 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -0.13 Total: -60.88 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.17 Total: -14.71 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.19 -6.08 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986745607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.568 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds