Wall clock time and date at job start Tue Mar 31 2020 03:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.91940 * 2 1 4 4 C 1.54918 * 111.00284 * 236.10352 * 2 1 3 5 5 N 1.47425 * 104.82827 * 204.91696 * 4 2 1 6 6 C 1.34782 * 125.64189 * 204.10422 * 5 4 2 7 7 O 1.21541 * 120.00193 * 0.02562 * 6 5 4 8 8 C 1.47931 * 119.99736 * 179.97438 * 6 5 4 9 9 C 1.39979 * 120.11813 * 179.72073 * 8 6 5 10 10 C 1.38421 * 117.97023 * 179.78433 * 9 8 6 11 11 C 1.39345 * 118.03538 * 0.48554 * 10 9 8 12 12 O 1.35520 * 120.02687 * 179.72556 * 11 10 9 13 13 N 1.32682 * 119.94339 * 359.74904 * 11 10 9 14 14 N 1.28349 * 122.19718 * 0.02562 * 13 11 10 15 15 C 1.47015 * 108.70882 * 24.12597 * 5 4 2 16 16 C 1.54325 * 107.27065 * 358.94051 * 15 5 4 17 17 H 1.08996 * 110.72124 * 219.44887 * 16 15 5 18 18 N 1.46501 * 110.87274 * 96.24166 * 16 15 5 19 19 C 1.36936 * 119.99547 * 91.39334 * 18 16 15 20 20 H 1.07995 * 120.00374 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99522 * 179.97438 * 19 18 16 22 22 N 1.31622 * 120.00020 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99940 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47313 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47177 * 120.00201 * 23 21 19 26 26 H 1.48502 * 109.47260 * 239.99726 * 23 21 19 27 27 H 1.08999 * 109.46952 * 296.09720 * 1 2 3 28 28 H 1.08996 * 109.47229 * 56.09549 * 1 2 3 29 29 H 1.09000 * 109.47156 * 176.09970 * 1 2 3 30 30 H 1.08999 * 110.35942 * 323.74888 * 4 2 1 31 31 H 1.08996 * 110.36556 * 86.07721 * 4 2 1 32 32 H 1.08006 * 121.01286 * 0.02562 * 9 8 6 33 33 H 1.08003 * 120.97942 * 180.21975 * 10 9 8 34 34 H 0.96697 * 114.00303 * 270.02416 * 12 11 10 35 35 H 1.09000 * 109.88350 * 239.52260 * 15 5 4 36 36 H 1.08997 * 110.01690 * 118.42776 * 15 5 4 37 37 H 0.97003 * 119.99871 * 271.38973 * 18 16 15 38 38 H 0.97008 * 119.99637 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2005 5 7 3.4271 -1.2430 -0.7735 6 6 4.4477 -1.5613 -1.5943 7 8 4.3006 -1.4991 -2.7992 8 6 5.7472 -1.9852 -1.0286 9 6 6.8070 -2.3219 -1.8788 10 6 8.0045 -2.7080 -1.3019 11 6 8.0787 -2.7480 0.0890 12 8 9.2298 -3.1257 0.6962 13 7 7.0211 -2.4163 0.8183 14 7 5.9105 -2.0535 0.2871 15 6 3.4675 -1.2742 0.6958 16 6 2.0862 -0.8080 1.2021 17 1 2.1923 -0.1700 2.0795 18 7 1.2246 -1.9551 1.4988 19 6 1.2044 -2.4881 2.7600 20 1 1.8238 -2.0631 3.5358 21 6 0.3876 -3.5747 3.0412 22 7 -0.3678 -4.0923 2.0957 23 14 0.3604 -4.3023 4.7614 24 1 1.2923 -3.5441 5.6343 25 1 -1.0153 -4.2159 5.3138 26 1 0.7822 -5.7250 4.7038 27 1 -0.3633 0.4521 0.9229 28 1 -0.3633 0.5732 -0.8529 29 1 -0.3633 -1.0253 -0.0699 30 1 1.4518 -1.6703 -1.4025 31 1 2.1559 -0.1719 -2.0837 32 1 6.6949 -2.2778 -2.9521 33 1 8.8549 -2.9748 -1.9119 34 1 9.2933 -4.0762 0.8624 35 1 4.2427 -0.5998 1.0597 36 1 3.6662 -2.2884 1.0422 37 1 0.6684 -2.3370 0.8018 38 1 -0.9383 -4.8519 2.2922 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054358921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:26 Heat of formation + Delta-G solvation = 14.503144 kcal Electronic energy + Delta-G solvation = -23402.802998 eV Core-core repulsion = 19861.309686 eV Total energy + Delta-G solvation = -3541.493312 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.45097 -39.69186 -37.96990 -37.51192 -34.02905 -33.40341 -32.64651 -31.45943 -30.41309 -27.72777 -26.63683 -25.21245 -24.37405 -23.75327 -22.15949 -20.08198 -19.41077 -19.27371 -18.15946 -17.51853 -16.90292 -16.40366 -15.81850 -15.61071 -14.86772 -14.51670 -14.31000 -14.15789 -13.74764 -13.62950 -13.05578 -13.02991 -12.65420 -12.55583 -12.37882 -11.94601 -11.69118 -11.47060 -11.09799 -10.90716 -10.70925 -10.59959 -10.40424 -10.19898 -10.06159 -9.93726 -9.88457 -9.68695 -9.61014 -8.96129 -8.31005 -7.01791 -5.79956 -3.09119 0.18078 0.48767 2.52610 2.93076 3.15537 3.42773 3.49540 3.50299 3.51175 3.87549 4.29924 4.39950 4.57334 4.63313 4.66721 4.98711 5.22584 5.31423 5.35821 5.53512 5.59645 5.64637 5.73327 5.84350 5.90800 6.03981 6.24598 6.32251 6.37089 6.46572 6.58477 6.66507 6.88306 6.95523 6.96591 7.70425 7.71876 8.11498 8.37746 8.38311 9.50282 10.04588 10.39566 11.42409 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013783 B = 0.005075 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.983487 B = 5516.288267 C = 7025.517411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.116 4.116 3 H 0.079 0.921 4 C 0.113 3.887 5 N -0.580 5.580 6 C 0.582 3.418 7 O -0.546 6.546 8 C 0.022 3.978 9 C -0.050 4.050 10 C -0.144 4.144 11 C 0.268 3.732 12 O -0.474 6.474 13 N -0.255 5.255 14 N -0.166 5.166 15 C 0.080 3.920 16 C 0.168 3.832 17 H 0.075 0.925 18 N -0.711 5.711 19 C -0.241 4.241 20 H 0.074 0.926 21 C -0.010 4.010 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.279 1.279 25 H -0.292 1.292 26 H -0.293 1.293 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.409 0.591 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.386 0.614 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.215 4.677 -7.795 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.136 4.136 3 H 0.097 0.903 4 C -0.009 4.009 5 N -0.310 5.310 6 C 0.367 3.633 7 O -0.425 6.425 8 C -0.125 4.125 9 C -0.079 4.079 10 C -0.174 4.174 11 C 0.084 3.916 12 O -0.281 6.281 13 N -0.108 5.108 14 N -0.015 5.015 15 C -0.045 4.045 16 C 0.056 3.944 17 H 0.093 0.907 18 N -0.352 5.352 19 C -0.372 4.372 20 H 0.092 0.908 21 C -0.206 4.206 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.220 1.220 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.184 0.816 33 H 0.179 0.821 34 H 0.268 0.732 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.221 0.779 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.752 5.376 -6.789 16.252 hybrid contribution 0.596 -1.473 -0.572 1.689 sum 14.349 3.904 -7.361 16.593 Atomic orbital electron populations 1.21527 0.93204 1.03021 1.00938 1.22676 0.97076 0.98509 0.95387 0.90262 1.22397 0.82134 0.98694 0.97656 1.48345 1.11397 1.62394 1.08893 1.17034 0.82007 0.78822 0.85443 1.90777 1.82572 1.55546 1.13561 1.22943 0.96699 1.00440 0.92410 1.22392 0.90649 0.91786 1.03044 1.22530 0.99387 1.00522 0.94938 1.21106 0.87047 0.94618 0.88863 1.84716 1.31709 1.30790 1.80840 1.73219 0.95473 1.09682 1.32434 1.73723 1.12153 1.05828 1.09795 1.23476 1.00654 1.03513 0.76867 1.21311 0.88454 0.89889 0.94749 0.90738 1.42437 1.48573 1.33296 1.10848 1.19312 1.20121 1.09970 0.87749 0.90824 1.24727 0.99416 0.98853 0.97629 1.69671 1.30114 1.26408 1.31769 0.86137 0.77201 0.78861 0.84116 1.20415 1.21922 1.21981 0.92031 0.93778 0.91149 0.90691 0.90907 0.81641 0.82116 0.73197 0.91592 0.89467 0.77878 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.84 37.16 0.33 -1.68 16 2 C -0.12 -1.82 3.51 -88.47 -0.31 -2.13 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.11 1.84 6.34 -2.52 -0.02 1.83 16 5 N -0.58 -10.08 3.33 -171.60 -0.57 -10.65 16 6 C 0.58 9.98 7.84 -12.29 -0.10 9.89 16 7 O -0.55 -10.10 16.64 5.33 0.09 -10.01 16 8 C 0.02 0.33 6.80 -82.85 -0.56 -0.23 16 9 C -0.05 -0.56 9.72 -38.86 -0.38 -0.94 16 10 C -0.14 -1.32 10.14 -39.10 -0.40 -1.72 16 11 C 0.27 3.06 7.85 -16.77 -0.13 2.93 16 12 O -0.47 -4.22 13.56 -18.25 -0.25 -4.47 16 13 N -0.25 -3.85 11.54 30.55 0.35 -3.50 16 14 N -0.17 -2.69 8.06 33.32 0.27 -2.42 16 15 C 0.08 1.45 5.15 -3.07 -0.02 1.44 16 16 C 0.17 3.15 3.38 -66.09 -0.22 2.93 16 17 H 0.07 1.38 8.09 -51.93 -0.42 0.96 16 18 N -0.71 -16.64 4.51 -51.65 -0.23 -16.87 16 19 C -0.24 -6.36 9.96 -15.06 -0.15 -6.51 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 22 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 23 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.27 6.48 -51.93 -0.34 0.94 16 30 H 0.07 1.32 7.98 -51.93 -0.41 0.90 16 31 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 32 H 0.17 1.56 7.71 -52.48 -0.40 1.16 16 33 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.41 1.53 9.06 45.56 0.41 1.94 16 35 H 0.07 1.12 7.42 -51.93 -0.39 0.74 16 36 H 0.09 1.83 7.45 -51.93 -0.39 1.44 16 37 H 0.39 9.65 6.31 -40.82 -0.26 9.39 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 323.77 15.07 4.88 4.88 Total: -1.00 -32.93 323.77 -5.66 -38.59 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -3.85 Total: 8.65 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -2.05 Total: 5.42 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: 0.54 Total: -60.03 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.16 Total: -14.48 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.93 -5.66 -38.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054358921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.088 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds