Wall clock time and date at job start Tue Mar 31 2020 03:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.64202 * 2 1 4 4 C 1.54319 * 110.87401 * 123.25036 * 2 1 3 5 5 N 1.47018 * 107.27536 * 140.62577 * 4 2 1 6 6 C 1.34774 * 125.65557 * 181.09314 * 5 4 2 7 7 O 1.21597 * 119.99615 * 359.97438 * 6 5 4 8 8 C 1.47567 * 120.00403 * 179.97438 * 6 5 4 9 9 C 1.38060 * 119.72777 * 180.02562 * 8 6 5 10 10 N 1.34880 * 119.94875 * 179.97438 * 9 8 6 11 11 H 0.96993 * 120.30562 * 180.02562 * 10 9 8 12 12 C 1.34956 * 119.38037 * 0.02562 * 10 9 8 13 13 O 1.21864 * 120.26877 * 180.02562 * 12 10 9 14 14 C 1.41786 * 119.46311 * 359.97438 * 12 10 9 15 15 N 1.30606 * 120.03251 * 359.74780 * 14 12 10 16 16 C 1.47422 * 108.70074 * 1.05815 * 5 4 2 17 17 C 1.54912 * 104.83500 * 335.87099 * 16 5 4 18 18 H 1.09004 * 111.03866 * 155.09187 * 17 16 5 19 19 N 1.46501 * 111.00592 * 278.93728 * 17 16 5 20 20 C 1.36932 * 119.99720 * 267.19443 * 19 17 16 21 21 H 1.08009 * 120.00252 * 359.97438 * 20 19 17 22 22 C 1.38817 * 120.00195 * 179.97438 * 20 19 17 23 23 N 1.31615 * 120.00080 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99398 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47162 * 90.00418 * 24 22 20 26 26 H 1.48505 * 109.46715 * 209.99979 * 24 22 20 27 27 H 1.48501 * 109.47318 * 329.99963 * 24 22 20 28 28 H 1.09006 * 109.47176 * 180.70018 * 1 2 3 29 29 H 1.09005 * 109.47062 * 300.69701 * 1 2 3 30 30 H 1.08998 * 109.47130 * 60.69940 * 1 2 3 31 31 H 1.09001 * 109.88349 * 260.04422 * 4 2 1 32 32 H 1.09003 * 109.88537 * 21.20839 * 4 2 1 33 33 H 1.07995 * 120.02239 * 359.95759 * 9 8 6 34 34 H 1.08003 * 119.98255 * 179.97438 * 14 12 10 35 35 H 1.09003 * 110.37241 * 217.03467 * 16 5 4 36 36 H 1.09001 * 110.37136 * 94.70997 * 16 5 4 37 37 H 0.97001 * 119.99779 * 87.18834 * 19 17 16 38 38 H 0.97000 * 119.99425 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7906 1.2058 5 7 3.2494 -1.5470 0.7353 6 6 3.9997 -2.3796 1.4839 7 8 3.7279 -2.5546 2.6561 8 6 5.1509 -3.0787 0.8811 9 6 5.9153 -3.9307 1.6530 10 7 6.9682 -4.5724 1.1065 11 1 7.5085 -5.1724 1.6439 12 6 7.2629 -4.3719 -0.1952 13 8 8.2103 -4.9437 -0.7057 14 6 6.4607 -3.4913 -0.9642 15 7 5.4429 -2.8855 -0.4139 16 6 3.4651 -1.2447 -0.6914 17 6 2.0789 -0.7934 -1.2152 18 1 2.1813 -0.1491 -2.0884 19 7 1.2293 -1.9486 -1.5152 20 6 1.2036 -2.4691 -2.7815 21 1 1.8093 -2.0277 -3.5592 22 6 0.3990 -3.5640 -3.0657 23 7 0.3740 -4.0640 -4.2829 24 14 -0.6480 -4.3278 -1.7204 25 1 -1.9791 -3.6700 -1.6955 26 1 -0.8177 -5.7785 -1.9888 27 1 0.0205 -4.1423 -0.4074 28 1 -0.3634 -1.0276 0.0126 29 1 -0.3633 0.5246 0.8837 30 1 -0.3633 0.5029 -0.8962 31 1 2.3775 -0.1016 1.9963 32 1 1.3191 -1.4773 1.5770 33 1 5.6704 -4.0829 2.6938 34 1 6.6892 -3.3244 -2.0065 35 1 3.7992 -2.1364 -1.2219 36 1 4.1929 -0.4409 -0.8031 37 1 0.6851 -2.3448 -0.8167 38 1 -0.1880 -4.8293 -4.4814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055016865.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:49 Heat of formation + Delta-G solvation = 7.204696 kcal Electronic energy + Delta-G solvation = -23808.434001 eV Core-core repulsion = 20266.624205 eV Total energy + Delta-G solvation = -3541.809796 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.92058 -39.82615 -38.01301 -37.30603 -35.46906 -33.94561 -32.42108 -30.88210 -30.50970 -28.11889 -26.61459 -25.55572 -24.38811 -23.52759 -22.12285 -20.65510 -19.42003 -18.65485 -18.39985 -17.79508 -17.03252 -16.32213 -15.99007 -15.83784 -15.30459 -14.83836 -14.62242 -14.24715 -14.04849 -13.79470 -13.20170 -12.96113 -12.67856 -12.49965 -12.35091 -12.10186 -11.98599 -11.83743 -11.48317 -11.37469 -11.01621 -10.74655 -10.56026 -10.29853 -10.13755 -9.95518 -9.58392 -9.42402 -8.95837 -8.60578 -8.20836 -7.28805 -5.80403 -3.15691 0.27795 1.09166 2.25776 2.81633 3.17341 3.34522 3.38283 3.43160 3.62710 3.96347 4.03950 4.43192 4.55967 4.75991 4.84689 5.09212 5.13523 5.18047 5.38273 5.57804 5.61558 5.73720 5.80086 5.90053 5.91652 6.09425 6.12799 6.17619 6.22469 6.31152 6.52456 6.57545 6.70924 6.90728 7.30039 7.48829 7.77400 7.95633 8.28133 8.38854 9.16493 9.89221 10.08315 11.37609 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.005933 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.336381 B = 4718.339481 C = 5753.922958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.119 4.119 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.584 5.584 6 C 0.598 3.402 7 O -0.561 6.561 8 C -0.063 4.063 9 C 0.166 3.834 10 N -0.587 5.587 11 H 0.423 0.577 12 C 0.478 3.522 13 O -0.525 6.525 14 C 0.043 3.957 15 N -0.357 5.357 16 C 0.071 3.929 17 C 0.172 3.828 18 H 0.083 0.917 19 N -0.734 5.734 20 C -0.243 4.243 21 H 0.094 0.906 22 C 0.009 3.991 23 N -0.931 5.931 24 Si 0.876 3.124 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.278 1.278 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.188 0.812 34 H 0.196 0.804 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.362 0.638 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.039 5.379 12.614 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.139 4.139 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.314 5.314 6 C 0.386 3.614 7 O -0.442 6.442 8 C -0.187 4.187 9 C 0.031 3.969 10 N -0.220 5.220 11 H 0.263 0.737 12 C 0.273 3.727 13 O -0.401 6.401 14 C -0.147 4.147 15 N -0.072 5.072 16 C -0.054 4.054 17 C 0.061 3.939 18 H 0.101 0.899 19 N -0.375 5.375 20 C -0.372 4.372 21 H 0.111 0.889 22 C -0.187 4.187 23 N -0.578 5.578 24 Si 0.706 3.294 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.205 1.205 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.205 0.795 34 H 0.213 0.787 35 H 0.131 0.869 36 H 0.077 0.923 37 H 0.196 0.804 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.880 5.461 12.272 16.675 hybrid contribution -0.077 -1.613 1.632 2.296 sum 9.804 3.847 13.905 17.443 Atomic orbital electron populations 1.21605 0.93732 1.02400 1.01241 1.22591 0.96862 0.99006 0.95423 0.89731 1.22018 0.87514 0.94420 0.96830 1.48099 1.28330 1.42263 1.12716 1.16799 0.81143 0.78722 0.84781 1.90770 1.71788 1.65782 1.15841 1.20383 1.01974 1.05638 0.90672 1.23129 0.84701 0.88378 1.00721 1.43651 1.26155 1.38966 1.13229 0.73691 1.18860 0.87347 0.85045 0.81431 1.90994 1.29748 1.50037 1.69297 1.24923 0.91850 0.95805 1.02131 1.68133 1.12216 1.17554 1.09315 1.23735 0.99471 1.02744 0.79419 1.21432 0.88698 0.89159 0.94646 0.89899 1.42709 1.51024 1.34053 1.09743 1.19069 1.22017 1.10036 0.86105 0.88866 1.24621 0.99847 0.98350 0.95870 1.69687 1.43232 1.26463 1.18432 0.86685 0.81234 0.79112 0.82324 1.20930 1.21794 1.20456 0.92251 0.93450 0.91692 0.91859 0.91628 0.79478 0.78748 0.86867 0.92348 0.80380 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.76 37.16 0.33 -1.54 16 2 C -0.12 -1.67 3.41 -88.78 -0.30 -1.98 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.11 1.72 6.46 -3.07 -0.02 1.70 16 5 N -0.58 -9.54 3.33 -171.73 -0.57 -10.11 16 6 C 0.60 9.77 7.82 -12.46 -0.10 9.67 16 7 O -0.56 -9.96 16.61 5.28 0.09 -9.87 16 8 C -0.06 -0.87 6.68 -83.12 -0.56 -1.43 16 9 C 0.17 1.64 10.78 -16.28 -0.18 1.47 16 10 N -0.59 -5.23 5.28 -14.19 -0.07 -5.30 16 11 H 0.42 2.40 8.92 -40.82 -0.36 2.04 16 12 C 0.48 5.81 7.74 -14.82 -0.11 5.70 16 13 O -0.53 -7.88 17.95 5.04 0.09 -7.79 16 14 C 0.04 0.54 11.23 -16.72 -0.19 0.35 16 15 N -0.36 -5.05 6.65 -9.34 -0.06 -5.11 16 16 C 0.07 1.16 5.63 -2.53 -0.01 1.15 16 17 C 0.17 2.98 3.47 -65.78 -0.23 2.75 16 18 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 19 N -0.73 -16.09 4.38 -51.34 -0.22 -16.31 16 20 C -0.24 -6.42 10.44 -15.06 -0.16 -6.58 16 21 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 22 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 23 N -0.93 -28.46 13.97 55.49 0.78 -27.69 16 24 Si 0.88 21.86 27.73 -169.99 -4.71 17.14 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 28 H 0.06 0.97 6.44 -51.93 -0.33 0.64 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.06 7.81 -51.93 -0.41 0.66 16 33 H 0.19 1.37 7.58 -52.49 -0.40 0.97 16 34 H 0.20 2.05 8.06 -52.48 -0.42 1.63 16 35 H 0.11 2.09 5.85 -51.93 -0.30 1.79 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.36 8.14 4.22 -40.82 -0.17 7.97 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 318.59 15.07 4.80 4.80 Total: -1.00 -34.51 318.59 -6.04 -40.55 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -4.53 Total: 8.25 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -1.62 Total: 11.43 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.16 Total: -64.52 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.18 Total: -17.66 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.51 -6.04 -40.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055016865.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.759 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds