Wall clock time and date at job start Tue Mar 31 2020 03:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.64202 * 2 1 4 4 C 1.54319 * 110.87401 * 123.25036 * 2 1 3 5 5 N 1.47018 * 107.27536 * 140.62577 * 4 2 1 6 6 C 1.34774 * 125.65557 * 181.09314 * 5 4 2 7 7 O 1.21597 * 119.99615 * 359.97438 * 6 5 4 8 8 C 1.47567 * 120.00403 * 179.97438 * 6 5 4 9 9 C 1.38060 * 119.72777 * 180.02562 * 8 6 5 10 10 N 1.34880 * 119.94875 * 179.97438 * 9 8 6 11 11 H 0.96993 * 120.30562 * 180.02562 * 10 9 8 12 12 C 1.34956 * 119.38037 * 0.02562 * 10 9 8 13 13 O 1.21864 * 120.26877 * 180.02562 * 12 10 9 14 14 C 1.41786 * 119.46311 * 359.97438 * 12 10 9 15 15 N 1.30606 * 120.03251 * 359.74780 * 14 12 10 16 16 C 1.47422 * 108.70074 * 1.05815 * 5 4 2 17 17 C 1.54912 * 104.83500 * 335.87099 * 16 5 4 18 18 H 1.09004 * 111.03866 * 155.09187 * 17 16 5 19 19 N 1.46501 * 111.00592 * 278.93728 * 17 16 5 20 20 C 1.36932 * 119.99720 * 267.19443 * 19 17 16 21 21 H 1.08009 * 120.00252 * 359.97438 * 20 19 17 22 22 C 1.38817 * 120.00195 * 179.97438 * 20 19 17 23 23 N 1.31615 * 120.00080 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99398 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47162 * 90.00418 * 24 22 20 26 26 H 1.48505 * 109.46715 * 209.99979 * 24 22 20 27 27 H 1.48501 * 109.47318 * 329.99963 * 24 22 20 28 28 H 1.09006 * 109.47176 * 180.70018 * 1 2 3 29 29 H 1.09005 * 109.47062 * 300.69701 * 1 2 3 30 30 H 1.08998 * 109.47130 * 60.69940 * 1 2 3 31 31 H 1.09001 * 109.88349 * 260.04422 * 4 2 1 32 32 H 1.09003 * 109.88537 * 21.20839 * 4 2 1 33 33 H 1.07995 * 120.02239 * 359.95759 * 9 8 6 34 34 H 1.08003 * 119.98255 * 179.97438 * 14 12 10 35 35 H 1.09003 * 110.37241 * 217.03467 * 16 5 4 36 36 H 1.09001 * 110.37136 * 94.70997 * 16 5 4 37 37 H 0.97001 * 119.99779 * 87.18834 * 19 17 16 38 38 H 0.97000 * 119.99425 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7906 1.2058 5 7 3.2494 -1.5470 0.7353 6 6 3.9997 -2.3796 1.4839 7 8 3.7279 -2.5546 2.6561 8 6 5.1509 -3.0787 0.8811 9 6 5.9153 -3.9307 1.6530 10 7 6.9682 -4.5724 1.1065 11 1 7.5085 -5.1724 1.6439 12 6 7.2629 -4.3719 -0.1952 13 8 8.2103 -4.9437 -0.7057 14 6 6.4607 -3.4913 -0.9642 15 7 5.4429 -2.8855 -0.4139 16 6 3.4651 -1.2447 -0.6914 17 6 2.0789 -0.7934 -1.2152 18 1 2.1813 -0.1491 -2.0884 19 7 1.2293 -1.9486 -1.5152 20 6 1.2036 -2.4691 -2.7815 21 1 1.8093 -2.0277 -3.5592 22 6 0.3990 -3.5640 -3.0657 23 7 0.3740 -4.0640 -4.2829 24 14 -0.6480 -4.3278 -1.7204 25 1 -1.9791 -3.6700 -1.6955 26 1 -0.8177 -5.7785 -1.9888 27 1 0.0205 -4.1423 -0.4074 28 1 -0.3634 -1.0276 0.0126 29 1 -0.3633 0.5246 0.8837 30 1 -0.3633 0.5029 -0.8962 31 1 2.3775 -0.1016 1.9963 32 1 1.3191 -1.4773 1.5770 33 1 5.6704 -4.0829 2.6938 34 1 6.6892 -3.3244 -2.0065 35 1 3.7992 -2.1364 -1.2219 36 1 4.1929 -0.4409 -0.8031 37 1 0.6851 -2.3448 -0.8167 38 1 -0.1880 -4.8293 -4.4814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001055016865.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:48 Heat of formation + Delta-G solvation = -19.059310 kcal Electronic energy + Delta-G solvation = -23809.572893 eV Core-core repulsion = 20266.624205 eV Total energy + Delta-G solvation = -3542.948689 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.88657 -41.04782 -39.22408 -38.46176 -36.43556 -35.67091 -33.87526 -32.62672 -31.55432 -29.60547 -27.71897 -26.53192 -25.57596 -25.20788 -23.43344 -21.80174 -20.79115 -19.85458 -19.51941 -19.42577 -18.08988 -17.48211 -17.12925 -17.03296 -16.45461 -16.33655 -15.85397 -15.70860 -15.44407 -14.91320 -14.64202 -14.45224 -14.07083 -13.83775 -13.61514 -13.37475 -13.16833 -13.05866 -12.93019 -12.85906 -12.55431 -12.30025 -12.02530 -11.87627 -11.57181 -11.43103 -11.23720 -11.03350 -10.36291 -9.76258 -9.39790 -9.12667 -7.98168 -5.28218 -0.60299 0.05267 1.35203 1.36250 1.39020 1.42340 1.69829 2.05832 2.48469 2.58587 2.97917 3.08939 3.32572 3.47972 3.63732 3.75043 3.84167 3.98598 4.10977 4.19146 4.45788 4.65182 4.69208 4.76521 4.82887 4.92468 5.04185 5.12195 5.15050 5.22772 5.28058 5.34163 5.52896 5.57741 5.85788 6.26688 6.35677 6.51382 6.56353 7.07926 7.12698 7.90200 8.07009 9.23381 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.005933 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.336381 B = 4718.339481 C = 5753.922958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 H 0.119 0.881 4 C 0.112 3.888 5 N -0.593 5.593 6 C 0.593 3.407 7 O -0.580 6.580 8 C -0.101 4.101 9 C 0.207 3.793 10 N -0.566 5.566 11 H 0.443 0.557 12 C 0.481 3.519 13 O -0.555 6.555 14 C 0.031 3.969 15 N -0.374 5.374 16 C 0.084 3.916 17 C 0.158 3.842 18 H 0.086 0.914 19 N -0.736 5.736 20 C -0.211 4.211 21 H 0.069 0.931 22 C -0.058 4.058 23 N -0.981 5.981 24 Si 0.937 3.063 25 H -0.276 1.276 26 H -0.303 1.303 27 H -0.267 1.267 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.222 0.778 34 H 0.204 0.796 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.361 0.639 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.623 6.364 15.232 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.122 4.122 3 H 0.137 0.863 4 C -0.010 4.010 5 N -0.323 5.323 6 C 0.382 3.618 7 O -0.463 6.463 8 C -0.224 4.224 9 C 0.070 3.930 10 N -0.199 5.199 11 H 0.287 0.713 12 C 0.277 3.723 13 O -0.433 6.433 14 C -0.159 4.159 15 N -0.089 5.089 16 C -0.041 4.041 17 C 0.048 3.952 18 H 0.103 0.897 19 N -0.378 5.378 20 C -0.342 4.342 21 H 0.087 0.913 22 C -0.250 4.250 23 N -0.633 5.633 24 Si 0.766 3.234 25 H -0.202 1.202 26 H -0.230 1.230 27 H -0.193 1.193 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.238 0.762 34 H 0.221 0.779 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.195 0.805 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.499 6.488 14.948 19.385 hybrid contribution -0.160 -1.838 0.877 2.043 sum 10.339 4.650 15.825 19.467 Atomic orbital electron populations 1.21597 0.93696 1.01081 1.02522 1.22563 0.96814 1.00001 0.92855 0.86263 1.22115 0.86872 0.94419 0.97608 1.48217 1.28785 1.42684 1.12564 1.17137 0.81560 0.78469 0.84652 1.90746 1.72584 1.66457 1.16494 1.20255 1.02942 1.07982 0.91218 1.23432 0.82833 0.85472 1.01304 1.43512 1.25661 1.38259 1.12468 0.71341 1.18777 0.86717 0.84540 0.82254 1.90987 1.30968 1.51177 1.70177 1.25039 0.91822 0.96251 1.02761 1.68020 1.12713 1.18285 1.09863 1.23469 0.98769 1.02421 0.79402 1.21733 0.88952 0.88063 0.96460 0.89659 1.42707 1.51923 1.35266 1.07908 1.19069 1.19299 1.08547 0.87268 0.91265 1.25259 1.02231 0.99787 0.97712 1.69845 1.45217 1.27571 1.20647 0.85686 0.80020 0.77437 0.80225 1.20192 1.22997 1.19276 0.94845 0.90548 0.92025 0.89813 0.93173 0.76173 0.77941 0.89186 0.90025 0.80509 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 8.76 71.98 0.63 -2.75 16 2 C -0.10 -2.59 3.41 -9.61 -0.03 -2.63 16 3 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 4 C 0.11 3.06 6.46 86.73 0.56 3.62 16 5 N -0.59 -18.24 3.33 -815.51 -2.71 -20.95 16 6 C 0.59 18.29 7.82 86.71 0.68 18.97 16 7 O -0.58 -19.35 16.61 -4.02 -0.07 -19.42 16 8 C -0.10 -2.60 6.68 41.21 0.28 -2.32 16 9 C 0.21 3.47 10.78 84.18 0.91 4.38 16 10 N -0.57 -8.55 5.28 -316.86 -1.67 -10.22 16 11 H 0.44 3.56 8.92 -92.71 -0.83 2.73 16 12 C 0.48 11.04 7.74 85.09 0.66 11.69 16 13 O -0.56 -16.14 17.95 -4.88 -0.09 -16.23 16 14 C 0.03 0.75 11.23 85.75 0.96 1.71 16 15 N -0.37 -10.24 6.65 -183.47 -1.22 -11.46 16 16 C 0.08 2.61 5.63 86.86 0.49 3.10 16 17 C 0.16 5.21 3.47 46.39 0.16 5.38 16 18 H 0.09 2.79 8.09 -2.38 -0.02 2.77 16 19 N -0.74 -31.84 4.38 -316.35 -1.39 -33.22 16 20 C -0.21 -11.28 10.44 84.04 0.88 -10.40 16 21 H 0.07 4.00 8.06 -2.91 -0.02 3.98 16 22 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 23 N -0.98 -61.83 13.97 21.65 0.30 -61.53 16 24 Si 0.94 45.84 27.73 68.60 1.90 47.74 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 26 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 27 H -0.27 -12.37 6.52 99.48 0.65 -11.72 16 28 H 0.03 1.03 6.44 -2.38 -0.02 1.01 16 29 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.53 7.81 -2.39 -0.02 1.51 16 33 H 0.22 2.29 7.58 -2.91 -0.02 2.27 16 34 H 0.20 4.32 8.06 -2.91 -0.02 4.29 16 35 H 0.09 3.29 5.85 -2.39 -0.01 3.28 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.36 15.88 4.22 -92.71 -0.39 15.49 16 38 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -76.11 318.59 1.53 -74.58 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.16 Total: 22.87 kcal Atomic # 6 Polarization: 21.21 SS G_CDS: 6.63 Total: 27.84 kcal Atomic # 7 Polarization: -130.69 SS G_CDS: -6.69 Total: -137.38 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.15 Total: -35.65 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.90 Total: 47.74 kcal Total: -76.11 1.53 -74.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055016865.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.516 kcal (2) G-P(sol) polarization free energy of solvation -76.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds