Wall clock time and date at job start Tue Mar 31 2020 03:01:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.46504 * 119.99828 * 2 1
4 4 C 1.50702 * 109.47017 * 275.54553 * 3 2 1
5 5 H 1.08004 * 120.00117 * 4.70470 * 4 3 2
6 6 C 1.37879 * 119.99793 * 184.70115 * 4 3 2
7 7 N 1.31508 * 120.00100 * 0.02562 * 6 4 3
8 8 Si 1.86804 * 119.99869 * 179.97438 * 6 4 3
9 9 H 1.48499 * 109.47006 * 60.00374 * 8 6 4
10 10 H 1.48498 * 109.46856 * 180.02562 * 8 6 4
11 11 H 1.48499 * 109.46874 * 300.00186 * 8 6 4
12 12 S 1.65595 * 120.00346 * 180.02562 * 2 1 3
13 13 O 1.42096 * 106.40298 * 159.49898 * 12 2 1
14 14 O 1.42097 * 106.40288 * 26.57287 * 12 2 1
15 15 N 1.65605 * 107.21720 * 273.03570 * 12 2 1
16 16 C 1.46505 * 119.99956 * 62.72254 * 15 12 2
17 17 C 1.52994 * 109.47115 * 164.35727 * 16 15 12
18 18 H 1.08995 * 109.57757 * 55.15925 * 17 16 15
19 19 C 1.53181 * 109.52254 * 175.31703 * 17 16 15
20 20 C 1.53176 * 109.03606 * 176.88591 * 19 17 16
21 21 C 1.53097 * 109.16421 * 303.01965 * 20 19 17
22 22 O 1.42925 * 109.42262 * 57.60779 * 21 20 19
23 23 C 1.42906 * 114.08483 * 298.85375 * 22 21 20
24 24 H 1.08995 * 109.46956 * 269.99581 * 1 2 3
25 25 H 1.08996 * 109.47479 * 30.00258 * 1 2 3
26 26 H 1.09007 * 109.46779 * 149.99617 * 1 2 3
27 27 H 1.09000 * 109.46737 * 35.54442 * 3 2 1
28 28 H 1.08995 * 109.47241 * 155.54249 * 3 2 1
29 29 H 0.97003 * 120.00491 * 179.97438 * 7 6 4
30 30 H 0.96998 * 120.00255 * 242.73087 * 15 12 2
31 31 H 1.09003 * 109.46906 * 44.36012 * 16 15 12
32 32 H 1.08998 * 109.47315 * 284.35947 * 16 15 12
33 33 H 1.09000 * 109.54353 * 296.75368 * 19 17 16
34 34 H 1.09002 * 109.54009 * 57.02303 * 19 17 16
35 35 H 1.09001 * 109.52485 * 62.92444 * 20 19 17
36 36 H 1.09003 * 109.52585 * 183.05207 * 20 19 17
37 37 H 1.09001 * 109.48125 * 177.59050 * 21 20 19
38 38 H 1.08996 * 109.47950 * 297.61154 * 21 20 19
39 39 H 1.08997 * 109.47753 * 301.15812 * 23 22 21
40 40 H 1.08997 * 109.47942 * 181.13887 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.3297 1.7725 -1.4142
5 1 1.8456 1.2450 -2.2228
6 6 3.0687 2.9067 -1.6757
7 7 3.6586 3.5487 -0.6912
8 14 3.2333 3.5306 -3.4288
9 1 1.8870 3.8469 -3.9700
10 1 4.0727 4.7555 -3.4414
11 1 3.8713 2.4851 -4.2684
12 16 2.2931 -1.4340 -0.0006
13 8 3.5994 -1.1429 -0.4779
14 8 1.4379 -2.3909 -0.6108
15 7 2.4656 -1.9011 1.5788
16 6 1.2811 -2.1945 2.3895
17 6 1.7000 -2.9606 3.6458
18 1 2.4606 -2.3938 4.1826
19 6 0.4810 -3.1658 4.5505
20 6 0.8958 -4.0003 5.7661
21 6 1.4927 -5.3258 5.2859
22 8 2.6026 -5.0629 4.4247
23 6 2.2657 -4.3262 3.2474
24 1 -0.3633 -0.0001 1.0276
25 1 -0.3634 0.8899 -0.5138
26 1 -0.3633 -0.8900 -0.5139
27 1 1.6549 2.0015 0.5974
28 1 3.1892 1.1158 0.4254
29 1 4.1789 4.3465 -0.8752
30 1 3.3509 -1.9804 1.9672
31 1 0.5849 -2.8005 1.8096
32 1 0.7976 -1.2610 2.6775
33 1 0.1068 -2.1977 4.8833
34 1 -0.2991 -3.6894 3.9978
35 1 1.6403 -3.4544 6.3458
36 1 0.0226 -4.1971 6.3881
37 1 1.8289 -5.9057 6.1454
38 1 0.7352 -5.8892 4.7411
39 1 1.5185 -4.8766 2.6757
40 1 3.1587 -4.1861 2.6383
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000048673519.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:01:28
Heat of formation + Delta-G solvation = -135.402220 kcal
Electronic energy + Delta-G solvation = -22444.021785 eV
Core-core repulsion = 18999.179289 eV
Total energy + Delta-G solvation = -3444.842496 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 292.129 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-39.69558 -36.64345 -35.92453 -35.47466 -35.15251 -33.41504 -32.43510 -31.01471
-27.77863 -25.89819 -25.25722 -25.06044 -22.33890 -22.24337 -20.49557 -18.83691
-17.31681 -16.79634 -16.61816 -16.34549 -16.09154 -15.84680 -15.14214 -15.00583
-14.59968 -14.28947 -13.86686 -13.33298 -13.28603 -13.17930 -12.90748 -12.47677
-12.28529 -12.14219 -11.75495 -11.60964 -11.47229 -11.39995 -11.26855 -11.15761
-11.05244 -10.74555 -10.70549 -10.55382 -10.48959 -10.04534 -9.78512 -9.72829
-9.29674 -8.43966 -8.07400 -6.06222 -4.10611 1.23582 3.33812 3.37609
3.41843 3.51135 3.64876 4.13045 4.44589 4.46267 4.52923 4.54377
4.65908 4.88639 5.04232 5.08406 5.21356 5.28764 5.34637 5.38907
5.42794 5.49992 5.59267 5.65110 5.68938 5.74381 5.85058 5.96010
6.01017 6.12608 6.29185 6.55094 6.97135 7.07979 7.26299 7.41004
7.62245 7.91009 8.20524 8.91595 9.54766 11.02381
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.033752 B = 0.003742 C = 0.003688
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 829.388827 B = 7481.551008 C = 7590.049818
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.094 3.906
2 N -0.996 5.996
3 C 0.257 3.743
4 C -0.533 4.533
5 H 0.060 0.940
6 C 0.063 3.937
7 N -0.895 5.895
8 Si 0.897 3.103
9 H -0.276 1.276
10 H -0.286 1.286
11 H -0.274 1.274
12 S 2.782 3.218
13 O -0.963 6.963
14 O -0.999 6.999
15 N -1.136 6.136
16 C 0.127 3.873
17 C -0.129 4.129
18 H 0.088 0.912
19 C -0.118 4.118
20 C -0.155 4.155
21 C 0.058 3.942
22 O -0.383 6.383
23 C 0.063 3.937
24 H 0.038 0.962
25 H 0.077 0.923
26 H 0.065 0.935
27 H 0.032 0.968
28 H 0.043 0.957
29 H 0.264 0.736
30 H 0.412 0.588
31 H 0.076 0.924
32 H 0.068 0.932
33 H 0.073 0.927
34 H 0.068 0.932
35 H 0.072 0.928
36 H 0.073 0.927
37 H 0.091 0.909
38 H 0.050 0.950
39 H 0.054 0.946
40 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.489 -13.619 13.132 20.347
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.053 4.053
2 N -0.838 5.838
3 C 0.135 3.865
4 C -0.572 4.572
5 H 0.078 0.922
6 C -0.140 4.140
7 N -0.534 5.534
8 Si 0.725 3.275
9 H -0.202 1.202
10 H -0.211 1.211
11 H -0.200 1.200
12 S 2.790 3.210
13 O -0.947 6.947
14 O -0.982 6.982
15 N -0.895 5.895
16 C 0.001 3.999
17 C -0.149 4.149
18 H 0.106 0.894
19 C -0.156 4.156
20 C -0.193 4.193
21 C -0.019 4.019
22 O -0.301 6.301
23 C -0.013 4.013
24 H 0.056 0.944
25 H 0.096 0.904
26 H 0.084 0.916
27 H 0.050 0.950
28 H 0.060 0.940
29 H 0.074 0.926
30 H 0.246 0.754
31 H 0.094 0.906
32 H 0.086 0.914
33 H 0.091 0.909
34 H 0.086 0.914
35 H 0.091 0.909
36 H 0.092 0.908
37 H 0.109 0.891
38 H 0.068 0.932
39 H 0.073 0.927
40 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -7.068 -13.964 12.361 19.944
hybrid contribution 0.067 0.854 -0.431 0.959
sum -7.001 -13.110 11.930 19.058
Atomic orbital electron populations
1.21375 0.80340 1.03533 1.00061 1.57592 1.14203 1.23328 1.88721
1.19061 0.91217 0.78614 0.97606 1.21467 1.31952 1.10356 0.93431
0.92198 1.24935 0.94988 0.96516 0.97514 1.69904 1.33117 1.18953
1.31407 0.86570 0.78130 0.78170 0.84656 1.20167 1.21146 1.19977
1.01935 0.73376 0.72918 0.72817 1.93646 1.38701 1.84540 1.77805
1.93520 1.69005 1.61163 1.74503 1.56297 1.13917 1.85900 1.33416
1.21179 0.87460 0.99439 0.91869 1.22011 0.99052 0.97551 0.96303
0.89367 1.21609 0.97069 1.00930 0.96003 1.22181 1.01521 0.97340
0.98237 1.22592 0.89424 0.95910 0.93996 1.87958 1.33479 1.74619
1.34068 1.22684 1.01373 0.90439 0.86834 0.94393 0.90389 0.91625
0.95041 0.93951 0.92608 0.75438 0.90576 0.91421 0.90851 0.91350
0.90944 0.90791 0.89067 0.93207 0.92721 0.88464
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.55 10.69 59.85 0.64 2.19 16
2 N -1.00 -20.30 3.23 -123.05 -0.40 -20.70 16
3 C 0.26 6.42 5.10 -5.19 -0.03 6.39 16
4 C -0.53 -15.00 9.38 -34.44 -0.32 -15.32 16
5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16
6 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16
7 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16
8 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16
9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16
11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16
12 S 2.78 54.14 6.09 -107.50 -0.65 53.48 16
13 O -0.96 -22.99 16.99 -57.17 -0.97 -23.96 16
14 O -1.00 -20.41 16.34 -57.17 -0.93 -21.34 16
15 N -1.14 -16.09 5.61 -10.61 -0.06 -16.15 16
16 C 0.13 1.46 5.66 -4.04 -0.02 1.43 16
17 C -0.13 -1.25 2.42 -90.48 -0.22 -1.47 16
18 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16
19 C -0.12 -0.93 5.31 -26.55 -0.14 -1.07 16
20 C -0.16 -1.12 6.14 -26.59 -0.16 -1.28 16
21 C 0.06 0.47 6.84 37.21 0.25 0.72 16
22 O -0.38 -4.25 10.77 -35.23 -0.38 -4.63 16
23 C 0.06 0.67 5.98 37.21 0.22 0.89 16
24 H 0.04 0.50 8.06 -51.93 -0.42 0.09 16
25 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16
26 H 0.07 1.03 7.05 -51.92 -0.37 0.66 16
27 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16
28 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16
29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16
30 H 0.41 5.21 8.41 -34.48 -0.29 4.92 16
31 H 0.08 0.86 7.79 -51.93 -0.40 0.46 16
32 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16
33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16
38 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16
39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
40 H 0.10 1.04 7.63 -51.93 -0.40 0.65 16
LS Contribution 338.10 15.07 5.10 5.10
Total: -1.00 -34.22 338.10 -8.91 -43.13
By element:
Atomic # 1 Polarization: 5.96 SS G_CDS: -6.45 Total: -0.49 kcal
Atomic # 6 Polarization: -5.95 SS G_CDS: 0.12 Total: -5.82 kcal
Atomic # 7 Polarization: -62.62 SS G_CDS: 0.28 Total: -62.34 kcal
Atomic # 8 Polarization: -47.65 SS G_CDS: -2.29 Total: -49.93 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal
Atomic # 16 Polarization: 54.14 SS G_CDS: -0.65 Total: 53.48 kcal
Total LS contribution 5.10 Total: 5.10 kcal
Total: -34.22 -8.91 -43.13 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000048673519.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -92.272 kcal
(2) G-P(sol) polarization free energy of solvation -34.218 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.490 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal
(6) G-S(sol) free energy of system = (1) + (5) -135.402 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds