Wall clock time and date at job start Tue Mar 31 2020 03:01:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.46504 * 119.99828 * 2 1
4 4 C 1.50702 * 109.47017 * 275.54553 * 3 2 1
5 5 H 1.08004 * 120.00117 * 4.70470 * 4 3 2
6 6 C 1.37879 * 119.99793 * 184.70115 * 4 3 2
7 7 N 1.31508 * 120.00100 * 0.02562 * 6 4 3
8 8 Si 1.86804 * 119.99869 * 179.97438 * 6 4 3
9 9 H 1.48499 * 109.47006 * 60.00374 * 8 6 4
10 10 H 1.48498 * 109.46856 * 180.02562 * 8 6 4
11 11 H 1.48499 * 109.46874 * 300.00186 * 8 6 4
12 12 S 1.65595 * 120.00346 * 180.02562 * 2 1 3
13 13 O 1.42096 * 106.40298 * 159.49898 * 12 2 1
14 14 O 1.42097 * 106.40288 * 26.57287 * 12 2 1
15 15 N 1.65605 * 107.21720 * 273.03570 * 12 2 1
16 16 C 1.46505 * 119.99956 * 62.72254 * 15 12 2
17 17 C 1.52994 * 109.47115 * 164.35727 * 16 15 12
18 18 H 1.08995 * 109.57757 * 55.15925 * 17 16 15
19 19 C 1.53181 * 109.52254 * 175.31703 * 17 16 15
20 20 C 1.53176 * 109.03606 * 176.88591 * 19 17 16
21 21 C 1.53097 * 109.16421 * 303.01965 * 20 19 17
22 22 O 1.42925 * 109.42262 * 57.60779 * 21 20 19
23 23 C 1.42906 * 114.08483 * 298.85375 * 22 21 20
24 24 H 1.08995 * 109.46956 * 269.99581 * 1 2 3
25 25 H 1.08996 * 109.47479 * 30.00258 * 1 2 3
26 26 H 1.09007 * 109.46779 * 149.99617 * 1 2 3
27 27 H 1.09000 * 109.46737 * 35.54442 * 3 2 1
28 28 H 1.08995 * 109.47241 * 155.54249 * 3 2 1
29 29 H 0.97003 * 120.00491 * 179.97438 * 7 6 4
30 30 H 0.96998 * 120.00255 * 242.73087 * 15 12 2
31 31 H 1.09003 * 109.46906 * 44.36012 * 16 15 12
32 32 H 1.08998 * 109.47315 * 284.35947 * 16 15 12
33 33 H 1.09000 * 109.54353 * 296.75368 * 19 17 16
34 34 H 1.09002 * 109.54009 * 57.02303 * 19 17 16
35 35 H 1.09001 * 109.52485 * 62.92444 * 20 19 17
36 36 H 1.09003 * 109.52585 * 183.05207 * 20 19 17
37 37 H 1.09001 * 109.48125 * 177.59050 * 21 20 19
38 38 H 1.08996 * 109.47950 * 297.61154 * 21 20 19
39 39 H 1.08997 * 109.47753 * 301.15812 * 23 22 21
40 40 H 1.08997 * 109.47942 * 181.13887 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.3297 1.7725 -1.4142
5 1 1.8456 1.2450 -2.2228
6 6 3.0687 2.9067 -1.6757
7 7 3.6586 3.5487 -0.6912
8 14 3.2333 3.5306 -3.4288
9 1 1.8870 3.8469 -3.9700
10 1 4.0727 4.7555 -3.4414
11 1 3.8713 2.4851 -4.2684
12 16 2.2931 -1.4340 -0.0006
13 8 3.5994 -1.1429 -0.4779
14 8 1.4379 -2.3909 -0.6108
15 7 2.4656 -1.9011 1.5788
16 6 1.2811 -2.1945 2.3895
17 6 1.7000 -2.9606 3.6458
18 1 2.4606 -2.3938 4.1826
19 6 0.4810 -3.1658 4.5505
20 6 0.8958 -4.0003 5.7661
21 6 1.4927 -5.3258 5.2859
22 8 2.6026 -5.0629 4.4247
23 6 2.2657 -4.3262 3.2474
24 1 -0.3633 -0.0001 1.0276
25 1 -0.3634 0.8899 -0.5138
26 1 -0.3633 -0.8900 -0.5139
27 1 1.6549 2.0015 0.5974
28 1 3.1892 1.1158 0.4254
29 1 4.1789 4.3465 -0.8752
30 1 3.3509 -1.9804 1.9672
31 1 0.5849 -2.8005 1.8096
32 1 0.7976 -1.2610 2.6775
33 1 0.1068 -2.1977 4.8833
34 1 -0.2991 -3.6894 3.9978
35 1 1.6403 -3.4544 6.3458
36 1 0.0226 -4.1971 6.3881
37 1 1.8289 -5.9057 6.1454
38 1 0.7352 -5.8892 4.7411
39 1 1.5185 -4.8766 2.6757
40 1 3.1587 -4.1861 2.6383
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000048673519.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:01:28
Heat of formation + Delta-G solvation = -161.854331 kcal
Electronic energy + Delta-G solvation = -22445.168834 eV
Core-core repulsion = 18999.179289 eV
Total energy + Delta-G solvation = -3445.989545 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 292.129 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-40.43736 -38.28394 -37.23207 -36.88462 -36.84000 -34.50552 -34.18918 -31.84682
-29.65724 -26.89731 -26.65942 -25.94345 -24.20360 -23.05502 -21.27471 -20.23095
-18.94005 -18.43102 -18.24223 -17.44171 -17.14023 -16.99194 -16.60897 -15.98459
-15.87323 -15.34165 -15.14054 -14.94127 -14.45448 -14.19230 -14.02086 -13.81364
-13.61368 -13.39372 -13.29749 -13.13551 -13.02628 -12.92089 -12.85262 -12.47542
-12.36318 -12.11833 -12.00399 -11.94050 -11.77487 -11.53253 -11.24629 -10.62908
-10.56413 -10.30383 -9.77487 -8.20558 -6.32802 -0.30606 1.39126 1.43004
1.49885 2.05754 2.40425 2.65315 2.94508 3.10615 3.46717 3.72608
3.80362 3.84898 4.06061 4.09086 4.19707 4.37235 4.47161 4.57067
4.59457 4.68881 4.77721 4.80513 4.83956 4.85389 4.97901 5.09645
5.11818 5.14957 5.20944 5.25806 5.41700 5.45695 5.70452 5.87045
6.08659 6.14716 6.26712 6.75790 7.36303 8.86828
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.033752 B = 0.003742 C = 0.003688
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 829.388827 B = 7481.551008 C = 7590.049818
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.086 3.914
2 N -1.002 6.002
3 C 0.272 3.728
4 C -0.554 4.554
5 H 0.053 0.947
6 C 0.012 3.988
7 N -0.924 5.924
8 Si 0.956 3.044
9 H -0.262 1.262
10 H -0.277 1.277
11 H -0.278 1.278
12 S 2.799 3.201
13 O -1.013 7.013
14 O -1.009 7.009
15 N -1.121 6.121
16 C 0.120 3.880
17 C -0.122 4.122
18 H 0.085 0.915
19 C -0.117 4.117
20 C -0.151 4.151
21 C 0.049 3.951
22 O -0.404 6.404
23 C 0.059 3.941
24 H 0.076 0.924
25 H 0.069 0.931
26 H 0.075 0.925
27 H 0.028 0.972
28 H 0.018 0.982
29 H 0.268 0.732
30 H 0.421 0.579
31 H 0.081 0.919
32 H 0.081 0.919
33 H 0.083 0.917
34 H 0.077 0.923
35 H 0.066 0.934
36 H 0.094 0.906
37 H 0.104 0.896
38 H 0.058 0.942
39 H 0.057 0.943
40 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.983 -14.068 13.896 21.718
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 N -0.844 5.844
3 C 0.148 3.852
4 C -0.593 4.593
5 H 0.072 0.928
6 C -0.188 4.188
7 N -0.563 5.563
8 Si 0.781 3.219
9 H -0.187 1.187
10 H -0.201 1.201
11 H -0.203 1.203
12 S 2.807 3.193
13 O -0.997 6.997
14 O -0.992 6.992
15 N -0.885 5.885
16 C -0.006 4.006
17 C -0.142 4.142
18 H 0.103 0.897
19 C -0.156 4.156
20 C -0.189 4.189
21 C -0.027 4.027
22 O -0.323 6.323
23 C -0.018 4.018
24 H 0.095 0.905
25 H 0.088 0.912
26 H 0.094 0.906
27 H 0.046 0.954
28 H 0.036 0.964
29 H 0.076 0.924
30 H 0.256 0.744
31 H 0.100 0.900
32 H 0.100 0.900
33 H 0.101 0.899
34 H 0.095 0.905
35 H 0.085 0.915
36 H 0.113 0.887
37 H 0.122 0.878
38 H 0.076 0.924
39 H 0.076 0.924
40 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -8.592 -14.424 13.127 21.312
hybrid contribution 0.487 0.891 -0.575 1.167
sum -8.105 -13.534 12.552 20.159
Atomic orbital electron populations
1.21633 0.78042 1.03629 1.02661 1.57458 1.15762 1.21846 1.89374
1.18609 0.90547 0.80248 0.95809 1.21853 1.32025 1.10665 0.94803
0.92833 1.25762 0.94721 0.96817 1.01492 1.69997 1.33684 1.19395
1.33257 0.85642 0.78779 0.77657 0.79852 1.18659 1.20149 1.20347
1.01160 0.71984 0.72500 0.73637 1.93574 1.41272 1.85194 1.79709
1.93500 1.69003 1.61108 1.75581 1.55833 1.15536 1.85123 1.31993
1.21486 0.86335 1.00558 0.92200 1.21946 0.99957 0.96631 0.95659
0.89680 1.21645 0.96213 1.01797 0.95905 1.22162 1.02117 0.96516
0.98065 1.22828 0.89037 0.96794 0.94083 1.87928 1.35157 1.74774
1.34474 1.22696 1.01112 0.91017 0.86929 0.90527 0.91207 0.90631
0.95357 0.96368 0.92357 0.74391 0.90026 0.90048 0.89852 0.90479
0.91513 0.88720 0.87840 0.92402 0.92440 0.89426
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 2.70 10.69 127.77 1.37 4.06 16
2 N -1.00 -40.44 3.23 -543.22 -1.75 -42.19 16
3 C 0.27 13.73 5.10 85.63 0.44 14.17 16
4 C -0.55 -31.52 9.38 25.60 0.24 -31.28 16
5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16
6 C 0.01 0.67 5.46 84.66 0.46 1.13 16
7 N -0.92 -54.56 13.29 21.45 0.28 -54.28 16
8 Si 0.96 44.80 29.54 68.60 2.03 46.82 16
9 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16
10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16
11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16
12 S 2.80 108.47 6.09 -56.49 -0.34 108.13 16
13 O -1.01 -49.50 16.99 -128.00 -2.18 -51.68 16
14 O -1.01 -40.39 16.34 -128.00 -2.09 -42.49 16
15 N -1.12 -30.82 5.61 -187.49 -1.05 -31.87 16
16 C 0.12 2.49 5.66 86.38 0.49 2.98 16
17 C -0.12 -2.14 2.42 -10.70 -0.03 -2.16 16
18 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16
19 C -0.12 -1.53 5.31 30.71 0.16 -1.36 16
20 C -0.15 -1.79 6.14 30.69 0.19 -1.60 16
21 C 0.05 0.69 6.84 72.01 0.49 1.18 16
22 O -0.40 -8.52 10.77 -148.98 -1.60 -10.12 16
23 C 0.06 1.18 5.98 72.01 0.43 1.61 16
24 H 0.08 1.81 8.06 -2.39 -0.02 1.79 16
25 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16
26 H 0.08 2.22 7.05 -2.38 -0.02 2.21 16
27 H 0.03 1.43 8.11 -2.39 -0.02 1.41 16
28 H 0.02 1.01 7.50 -2.39 -0.02 0.99 16
29 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16
30 H 0.42 10.47 8.41 -96.74 -0.81 9.66 16
31 H 0.08 1.65 7.79 -2.39 -0.02 1.63 16
32 H 0.08 1.51 8.06 -2.39 -0.02 1.49 16
33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16
34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16
35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
36 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16
37 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16
38 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16
39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
40 H 0.09 1.85 7.63 -2.39 -0.02 1.83 16
Total: -1.00 -73.41 338.10 -2.26 -75.67
By element:
Atomic # 1 Polarization: 13.07 SS G_CDS: 0.21 Total: 13.28 kcal
Atomic # 6 Polarization: -15.51 SS G_CDS: 4.24 Total: -11.27 kcal
Atomic # 7 Polarization: -125.83 SS G_CDS: -2.52 Total: -128.35 kcal
Atomic # 8 Polarization: -98.41 SS G_CDS: -5.87 Total: -104.28 kcal
Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal
Atomic # 16 Polarization: 108.47 SS G_CDS: -0.34 Total: 108.13 kcal
Total: -73.41 -2.26 -75.67 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000048673519.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -86.184 kcal
(2) G-P(sol) polarization free energy of solvation -73.415 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.599 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.255 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.670 kcal
(6) G-S(sol) free energy of system = (1) + (5) -161.854 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds