Wall clock time and date at job start Tue Mar 31 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38549 * 119.95308 * 2 1 4 4 N 1.33549 * 133.90359 * 0.02562 * 3 2 1 5 5 C 1.30868 * 109.80955 * 180.02562 * 4 3 2 6 6 N 1.34737 * 109.70987 * 0.02562 * 5 4 3 7 7 C 1.46500 * 126.50449 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47033 * 264.97051 * 7 6 5 9 9 C 1.52997 * 109.47249 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47251 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99800 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99994 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99788 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00056 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47030 * 59.99932 * 14 12 10 16 16 H 1.48500 * 109.47264 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47129 * 300.00241 * 14 12 10 18 18 C 1.38060 * 106.98788 * 359.78273 * 6 5 4 19 19 C 1.41155 * 134.58321 * 179.53117 * 18 6 5 20 20 O 1.21803 * 120.38633 * 0.63852 * 19 18 6 21 21 N 1.34928 * 119.22459 * 180.36445 * 19 18 6 22 22 C 1.46502 * 119.50759 * 180.24803 * 21 19 18 23 23 C 1.34413 * 120.98992 * 0.27610 * 21 19 18 24 24 O 1.21600 * 119.17219 * 179.97438 * 23 21 19 25 25 H 1.08998 * 109.47485 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47450 * 299.98453 * 1 2 3 27 27 H 1.09006 * 109.47008 * 59.97570 * 1 2 3 28 28 H 1.07996 * 125.14903 * 179.97438 * 5 4 3 29 29 H 1.08996 * 109.47485 * 24.97238 * 7 6 5 30 30 H 1.09003 * 109.47073 * 144.97846 * 7 6 5 31 31 H 1.08996 * 109.47137 * 300.00400 * 8 7 6 32 32 H 1.08997 * 109.46635 * 60.00035 * 8 7 6 33 33 H 1.09009 * 109.46594 * 300.00332 * 9 8 7 34 34 H 1.08997 * 109.46977 * 59.99724 * 9 8 7 35 35 H 0.97008 * 119.99799 * 179.97438 * 13 12 10 36 36 H 1.08993 * 109.46894 * 89.99957 * 22 21 19 37 37 H 1.08992 * 109.47381 * 210.00581 * 22 21 19 38 38 H 1.09004 * 109.46975 * 330.00543 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1567 1.2004 0.0000 4 7 1.7854 2.4833 0.0004 5 6 2.8448 3.2516 -0.0004 6 7 3.9573 2.4916 -0.0019 7 6 5.3412 2.9724 -0.0027 8 6 5.8633 3.0215 -1.4400 9 6 7.3087 3.5230 -1.4408 10 6 7.8227 3.5720 -2.8566 11 1 7.1826 3.2747 -3.6740 12 6 9.1102 3.9963 -3.1083 13 7 9.8895 4.3587 -2.1129 14 14 9.7475 4.0563 -4.8632 15 1 8.9029 4.9774 -5.6653 16 1 11.1501 4.5443 -4.8640 17 1 9.6960 2.6955 -5.4553 18 6 3.5457 1.1738 0.0029 19 6 4.2098 -0.0717 -0.0041 20 8 5.4268 -0.1210 -0.0058 21 7 3.4806 -1.2070 -0.0033 22 6 4.1635 -2.5032 -0.0051 23 6 2.1371 -1.1667 -0.0015 24 8 1.5128 -2.2102 -0.0012 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5136 0.8901 27 1 -0.3633 0.5142 -0.8898 28 1 2.8296 4.3315 -0.0006 29 1 5.3791 3.9712 0.4320 30 1 5.9611 2.2961 0.5860 31 1 5.8254 2.0227 -1.8747 32 1 5.2434 3.6977 -2.0287 33 1 7.3469 4.5219 -1.0059 34 1 7.9283 2.8465 -0.8521 35 1 10.7955 4.6569 -2.2899 36 1 4.3347 -2.8250 1.0221 37 1 3.5447 -3.2392 -0.5181 38 1 5.1194 -2.4095 -0.5205 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059497906.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:01 Heat of formation + Delta-G solvation = -4.918610 kcal Electronic energy + Delta-G solvation = -23440.372637 eV Core-core repulsion = 19898.037135 eV Total energy + Delta-G solvation = -3542.335502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.15183 -42.24050 -40.28052 -37.77701 -36.66746 -36.38186 -34.89978 -32.87416 -31.69293 -28.91214 -28.69317 -27.76603 -25.57899 -24.93689 -24.17819 -22.50419 -22.07736 -20.51276 -19.52547 -18.61491 -18.48709 -18.14162 -17.09757 -16.88643 -16.58396 -16.45338 -16.35693 -15.99654 -15.87019 -15.31527 -14.96298 -14.61340 -14.29095 -13.96819 -13.90289 -13.45668 -13.38859 -13.27112 -12.91324 -12.74443 -12.58049 -12.35935 -11.92627 -11.81569 -11.62710 -11.51268 -11.32614 -11.25474 -11.04376 -10.63330 -10.56566 -9.28145 -8.22409 -6.32728 -0.21119 0.58446 0.74403 1.38946 1.41224 1.46947 1.49758 1.57161 1.71796 2.25942 2.39561 2.90997 3.11609 3.30916 3.65519 3.75311 4.05835 4.08877 4.24644 4.29775 4.37438 4.39253 4.49455 4.49748 4.54835 4.68533 4.77925 4.80741 4.92230 4.99945 5.07503 5.30614 5.45849 5.66888 5.80269 5.84641 6.00374 6.20919 6.25506 6.42484 6.74605 6.82169 7.36241 8.88841 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.003835 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.170343 B = 7298.610975 C = 7933.972087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.511 5.511 3 C 0.313 3.687 4 N -0.510 5.510 5 C 0.287 3.713 6 N -0.407 5.407 7 C 0.113 3.887 8 C -0.102 4.102 9 C 0.031 3.969 10 C -0.546 4.546 11 H 0.054 0.946 12 C 0.006 3.994 13 N -0.928 5.928 14 Si 0.959 3.041 15 H -0.264 1.264 16 H -0.281 1.281 17 H -0.274 1.274 18 C -0.183 4.183 19 C 0.583 3.417 20 O -0.537 6.537 21 N -0.555 5.555 22 C 0.081 3.919 23 C 0.708 3.292 24 O -0.555 6.555 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.277 0.723 29 H 0.139 0.861 30 H 0.081 0.919 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.015 0.985 34 H -0.010 1.010 35 H 0.265 0.735 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.921 -5.460 6.557 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.238 5.238 3 C 0.080 3.920 4 N -0.234 5.234 5 C 0.004 3.996 6 N -0.086 5.086 7 C -0.008 4.008 8 C -0.140 4.140 9 C -0.007 4.007 10 C -0.584 4.584 11 H 0.072 0.928 12 C -0.193 4.193 13 N -0.568 5.568 14 Si 0.784 3.216 15 H -0.189 1.189 16 H -0.206 1.206 17 H -0.199 1.199 18 C -0.300 4.300 19 C 0.379 3.621 20 O -0.414 6.414 21 N -0.299 5.299 22 C -0.059 4.059 23 C 0.410 3.590 24 O -0.430 6.430 25 H 0.122 0.878 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.292 0.708 29 H 0.157 0.843 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.033 0.967 34 H 0.008 0.992 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.085 -5.778 6.606 21.006 hybrid contribution 1.693 -0.304 -0.827 1.909 sum -17.391 -6.081 5.779 19.309 Atomic orbital electron populations 1.22184 0.72579 1.05779 1.04899 1.43957 1.09847 1.00411 1.69594 1.18221 0.86513 0.88055 0.99221 1.69750 1.30021 0.97643 1.25983 1.26377 0.77093 1.00699 0.95400 1.45204 1.09784 1.03145 1.50507 1.22284 0.76531 1.02682 0.99296 1.21690 0.97989 1.00127 0.94240 1.18880 0.90651 0.95376 0.95750 1.21571 0.98554 1.44199 0.94062 0.92814 1.25869 0.97187 0.94805 1.01431 1.70057 1.08395 1.45269 1.33083 0.85590 0.77513 0.78690 0.79816 1.18861 1.20607 1.19932 1.18951 0.94070 0.87879 1.29053 1.15798 0.86620 0.83237 0.76463 1.90943 1.13591 1.87467 1.49418 1.45927 1.06087 1.10264 1.67596 1.22096 0.98401 0.80281 1.05112 1.15490 0.81296 0.83703 0.78485 1.90977 1.65958 1.29709 1.56370 0.87845 0.88953 0.89288 0.70795 0.84315 0.90074 0.95034 0.91149 0.96709 0.99157 0.92655 0.89313 0.87575 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.41 10.63 127.77 1.36 2.76 16 2 N -0.51 -12.41 3.06 -678.20 -2.07 -14.49 16 3 C 0.31 8.25 7.69 132.82 1.02 9.27 16 4 N -0.51 -11.67 11.20 -196.26 -2.20 -13.87 16 5 C 0.29 5.52 12.49 180.25 2.25 7.77 16 6 N -0.41 -10.77 2.78 -520.10 -1.44 -12.21 16 7 C 0.11 3.30 5.87 86.38 0.51 3.80 16 8 C -0.10 -3.93 5.48 30.59 0.17 -3.77 16 9 C 0.03 1.55 4.97 29.85 0.15 1.70 16 10 C -0.55 -30.53 9.11 25.60 0.23 -30.30 16 11 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 12 C 0.01 0.31 5.46 84.65 0.46 0.77 16 13 N -0.93 -55.15 13.29 21.45 0.28 -54.87 16 14 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 15 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 C -0.18 -5.54 6.90 39.04 0.27 -5.28 16 19 C 0.58 19.41 7.44 84.93 0.63 20.04 16 20 O -0.54 -21.27 15.71 -4.68 -0.07 -21.34 16 21 N -0.55 -15.74 2.96 -806.91 -2.39 -18.12 16 22 C 0.08 1.83 10.09 127.77 1.29 3.11 16 23 C 0.71 19.21 8.12 179.21 1.45 20.66 16 24 O -0.56 -15.80 15.01 -4.03 -0.06 -15.86 16 25 H 0.10 1.64 6.85 -2.39 -0.02 1.63 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.28 2.20 8.06 -2.91 -0.02 2.18 16 29 H 0.14 3.00 8.13 -2.39 -0.02 2.98 16 30 H 0.08 2.74 7.50 -2.39 -0.02 2.72 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 34 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.11 2.09 7.34 -2.39 -0.02 2.07 16 38 H 0.09 2.12 7.40 -2.39 -0.02 2.11 16 Total: -1.00 -74.67 327.43 4.95 -69.73 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 1.08 Total: 4.61 kcal Atomic # 6 Polarization: 20.77 SS G_CDS: 9.79 Total: 30.56 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -7.82 Total: -113.56 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.13 Total: -37.20 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -74.67 4.95 -69.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059497906.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.807 kcal (2) G-P(sol) polarization free energy of solvation -74.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds