Wall clock time and date at job start Tue Mar 31 2020 03:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42101 * 110.54541 * 2 1 4 4 O 1.42099 * 110.54492 * 223.24206 * 2 1 3 5 5 N 1.65599 * 104.44785 * 111.61975 * 2 1 3 6 6 C 1.46507 * 120.00215 * 273.93017 * 5 2 1 7 7 C 1.50691 * 109.46974 * 264.99946 * 6 5 2 8 8 H 1.08003 * 120.00383 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99786 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00129 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00114 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46776 * 89.99729 * 11 9 7 13 13 H 1.48496 * 109.46989 * 209.99753 * 11 9 7 14 14 H 1.48496 * 109.47034 * 330.00019 * 11 9 7 15 15 C 1.46507 * 119.99953 * 93.92858 * 5 2 1 16 16 C 1.53002 * 109.46871 * 265.00013 * 15 5 2 17 17 N 1.46908 * 109.46707 * 179.97438 * 16 15 5 18 18 C 1.47024 * 110.99261 * 46.32476 * 17 16 15 19 19 C 1.53103 * 109.24985 * 182.34870 * 18 17 16 20 20 O 1.43012 * 109.29295 * 303.21723 * 19 18 17 21 21 C 1.43011 * 113.74271 * 58.65008 * 20 19 18 22 22 C 1.47018 * 110.99661 * 170.00016 * 17 16 15 23 23 H 1.08997 * 109.47441 * 300.00655 * 1 2 3 24 24 H 1.09002 * 109.46769 * 60.00236 * 1 2 3 25 25 H 1.09006 * 109.47257 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46527 * 25.00071 * 6 5 2 27 27 H 1.09002 * 109.47196 * 144.99713 * 6 5 2 28 28 H 0.97004 * 120.00513 * 179.97438 * 10 9 7 29 29 H 1.09002 * 109.46696 * 145.00132 * 15 5 2 30 30 H 1.08999 * 109.46956 * 24.99978 * 15 5 2 31 31 H 1.09003 * 109.46906 * 60.00255 * 16 15 5 32 32 H 1.08999 * 109.47302 * 299.99754 * 16 15 5 33 33 H 1.08998 * 109.47369 * 62.43595 * 18 17 16 34 34 H 1.08998 * 109.54483 * 302.29802 * 18 17 16 35 35 H 1.09002 * 109.50635 * 183.25881 * 19 18 17 36 36 H 1.09003 * 109.50698 * 63.17493 * 19 18 17 37 37 H 1.08997 * 109.50806 * 61.26171 * 21 20 19 38 38 H 1.08997 * 109.50924 * 181.35636 * 21 20 19 39 39 H 1.08994 * 109.50209 * 57.67478 * 22 17 16 40 40 H 1.08997 * 109.50514 * 297.54292 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9116 5 7 2.2271 -0.5908 1.4908 6 6 2.3257 0.3165 2.6368 7 6 3.7577 0.7522 2.8108 8 1 4.5185 0.3893 2.1355 9 6 4.0969 1.6135 3.8327 10 7 3.1707 2.0550 4.6552 11 14 5.8722 2.1532 4.0488 12 1 6.1133 3.3888 3.2612 13 1 6.1364 2.4221 5.4851 14 1 6.7781 1.0775 3.5718 15 6 2.4941 -2.0210 1.6637 16 6 1.2216 -2.7230 2.1423 17 7 1.4892 -4.1572 2.3151 18 6 2.7470 -4.3741 3.0448 19 6 3.0161 -5.8776 3.1510 20 8 1.9037 -6.5130 3.7867 21 6 0.6630 -6.3226 3.1013 22 6 0.3694 -4.8237 2.9956 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6984 1.1907 2.4630 27 1 1.9905 -0.1979 3.5375 28 1 3.4093 2.6607 5.3744 29 1 3.2837 -2.1564 2.4028 30 1 2.8095 -2.4493 0.7123 31 1 0.4320 -2.5876 1.4031 32 1 0.9062 -2.2947 3.0937 33 1 2.6653 -3.9475 4.0445 34 1 3.5665 -3.8947 2.5095 35 1 3.9171 -6.0453 3.7410 36 1 3.1518 -6.2944 2.1529 37 1 0.7297 -6.7517 2.1017 38 1 -0.1377 -6.8127 3.6552 39 1 -0.5462 -4.6715 2.4242 40 1 0.2495 -4.4049 3.9948 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078496893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:32 Heat of formation + Delta-G solvation = -99.860364 kcal Electronic energy + Delta-G solvation = -22758.705780 eV Core-core repulsion = 19315.404495 eV Total energy + Delta-G solvation = -3443.301285 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.61789 -36.86252 -36.45931 -35.32198 -34.89801 -32.52977 -31.27888 -29.54218 -29.15279 -27.15387 -25.50276 -24.08035 -22.77360 -21.59516 -20.18761 -18.19700 -17.15978 -16.58154 -16.53809 -16.12937 -15.69709 -15.55778 -15.13831 -14.98819 -14.76345 -14.48266 -14.06593 -13.53805 -13.08312 -13.00667 -12.84261 -12.56653 -12.36873 -12.11486 -11.87379 -11.53323 -11.44961 -11.42880 -11.35119 -11.05454 -10.85884 -10.68600 -10.62067 -10.43909 -10.38688 -10.00914 -9.80840 -9.66461 -8.46221 -8.37148 -8.09922 -6.08277 -4.11216 0.82631 3.22927 3.32211 3.38255 3.42185 3.74480 3.90211 4.41996 4.44322 4.63908 4.80160 4.94657 4.98742 5.03392 5.10097 5.21485 5.26007 5.31529 5.36604 5.44923 5.49983 5.56905 5.72090 5.74128 5.78279 5.87676 5.91724 6.01106 6.32059 6.44164 6.93418 6.96176 7.07371 7.13939 7.32711 7.54129 7.89833 8.18470 8.91512 9.53943 11.00483 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013175 B = 0.005728 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.671923 B = 4887.077150 C = 6311.932032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.684 4.684 2 S 2.604 3.396 3 O -0.938 6.938 4 O -0.974 6.974 5 N -0.983 5.983 6 C 0.257 3.743 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.061 3.939 10 N -0.899 5.899 11 Si 0.897 3.103 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.119 3.881 16 C 0.033 3.967 17 N -0.533 5.533 18 C 0.007 3.993 19 C 0.064 3.936 20 O -0.389 6.389 21 C 0.065 3.935 22 C 0.016 3.984 23 H 0.126 0.874 24 H 0.118 0.882 25 H 0.119 0.881 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.263 0.737 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 -13.068 -4.101 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.832 4.832 2 S 2.694 3.306 3 O -0.928 6.928 4 O -0.964 6.964 5 N -0.821 5.821 6 C 0.135 3.865 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.141 4.141 10 N -0.538 5.538 11 Si 0.725 3.275 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.008 4.008 16 C -0.097 4.097 17 N -0.259 5.259 18 C -0.121 4.121 19 C -0.013 4.013 20 O -0.307 6.307 21 C -0.012 4.012 22 C -0.112 4.112 23 H 0.145 0.855 24 H 0.136 0.864 25 H 0.138 0.862 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.724 -12.976 -4.903 15.415 hybrid contribution -0.038 0.931 1.148 1.479 sum -6.762 -12.045 -3.754 14.315 Atomic orbital electron populations 1.30753 1.31179 1.10465 1.10804 1.05050 0.77310 0.74504 0.73698 1.93647 1.76222 1.37337 1.85569 1.93524 1.77601 1.62138 1.63143 1.57443 1.82524 1.14354 1.27793 1.19060 0.97805 0.87095 0.82569 1.21457 0.93788 1.27584 1.13294 0.91994 1.24925 0.97733 0.95805 0.95621 1.69910 1.32899 1.33422 1.17578 0.86511 0.84691 0.79293 0.77025 1.20435 1.21279 1.19826 1.21302 0.96086 0.80084 1.03308 1.22709 0.99614 0.86333 1.01007 1.62262 1.02518 1.12170 1.48957 1.22952 0.93695 0.97338 0.98093 1.22704 0.89167 0.91197 0.98215 1.87965 1.16515 1.74570 1.51682 1.22629 0.86588 0.94446 0.97522 1.22789 0.94916 0.95537 0.97969 0.85512 0.86352 0.86226 0.94561 0.94855 0.92736 0.89368 0.89059 0.91173 0.93499 0.93333 0.88390 0.88457 0.92281 0.92361 0.88750 0.89813 0.93779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -8.68 10.99 101.05 1.11 -7.57 16 2 S 2.60 46.90 6.00 -107.50 -0.64 46.26 16 3 O -0.94 -21.22 17.14 -57.54 -0.99 -22.21 16 4 O -0.97 -18.82 16.45 -57.54 -0.95 -19.76 16 5 N -0.98 -18.91 2.70 -115.66 -0.31 -19.22 16 6 C 0.26 6.06 5.01 -5.19 -0.03 6.03 16 7 C -0.52 -14.20 9.38 -34.44 -0.32 -14.53 16 8 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.90 -25.72 13.29 55.43 0.74 -24.99 16 11 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.12 1.98 4.91 -4.04 -0.02 1.96 16 16 C 0.03 0.46 5.60 -3.82 -0.02 0.44 16 17 N -0.53 -6.90 4.88 -234.29 -1.14 -8.04 16 18 C 0.01 0.09 4.94 -3.70 -0.02 0.07 16 19 C 0.06 0.72 7.01 37.21 0.26 0.98 16 20 O -0.39 -4.83 10.83 -35.23 -0.38 -5.21 16 21 C 0.07 0.66 7.01 37.21 0.26 0.92 16 22 C 0.02 0.18 5.63 -3.71 -0.02 0.16 16 23 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 24 H 0.12 1.26 8.14 -51.92 -0.42 0.84 16 25 H 0.12 1.27 7.55 -51.92 -0.39 0.88 16 26 H 0.04 0.90 7.72 -51.93 -0.40 0.50 16 27 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.09 1.52 6.25 -51.93 -0.32 1.20 16 30 H 0.09 1.50 6.77 -51.93 -0.35 1.15 16 31 H 0.07 0.88 7.55 -51.93 -0.39 0.49 16 32 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.10 1.24 6.05 -51.93 -0.31 0.92 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -33.51 335.54 -8.90 -42.42 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.37 Total: -0.99 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 1.11 Total: -9.92 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.72 Total: -52.25 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -2.31 Total: -47.18 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 46.90 SS G_CDS: -0.64 Total: 46.26 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.51 -8.90 -42.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078496893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.445 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds