Wall clock time and date at job start Tue Mar 31 2020 03:08:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42897 * 114.00344 * 2 1
4 4 C 1.52999 * 109.47156 * 179.97438 * 3 2 1
5 5 C 1.52999 * 109.47196 * 179.97438 * 4 3 2
6 6 S 1.81406 * 109.47101 * 180.02562 * 5 4 3
7 7 O 1.42101 * 110.54218 * 291.62398 * 6 5 4
8 8 O 1.42095 * 110.54056 * 68.37611 * 6 5 4
9 9 N 1.65602 * 104.44655 * 180.02562 * 6 5 4
10 10 C 1.46964 * 120.59412 * 269.71885 * 9 6 5
11 11 C 1.53812 * 108.39920 * 124.76039 * 10 9 6
12 12 N 1.46967 * 108.57727 * 49.63909 * 11 10 9
13 13 C 1.36929 * 120.59424 * 124.67022 * 12 11 10
14 14 H 1.08000 * 120.00324 * 332.30529 * 13 12 11
15 15 C 1.38819 * 120.00221 * 152.30231 * 13 12 11
16 16 N 1.31614 * 119.99909 * 159.30472 * 15 13 12
17 17 Si 1.86796 * 119.99821 * 339.30821 * 15 13 12
18 18 H 1.48503 * 109.47114 * 93.71715 * 17 15 13
19 19 H 1.48500 * 109.46987 * 213.71790 * 17 15 13
20 20 H 1.48502 * 109.47220 * 333.71700 * 17 15 13
21 21 C 1.46967 * 118.80892 * 304.64549 * 12 11 10
22 22 C 1.46967 * 120.59438 * 90.00335 * 9 6 5
23 23 H 1.09004 * 109.46752 * 59.99711 * 1 2 3
24 24 H 1.08994 * 109.47251 * 180.02562 * 1 2 3
25 25 H 1.09006 * 109.46521 * 300.00364 * 1 2 3
26 26 H 1.08999 * 109.47164 * 60.00075 * 3 2 1
27 27 H 1.08999 * 109.47109 * 300.00093 * 3 2 1
28 28 H 1.08999 * 109.47196 * 300.00050 * 4 3 2
29 29 H 1.09003 * 109.47458 * 59.99795 * 4 3 2
30 30 H 1.08999 * 109.47238 * 300.00207 * 5 4 3
31 31 H 1.09008 * 109.46994 * 60.00391 * 5 4 3
32 32 H 1.09007 * 109.60903 * 244.54447 * 10 9 6
33 33 H 1.09005 * 109.61061 * 5.05568 * 10 9 6
34 34 H 1.09003 * 109.74123 * 289.84907 * 11 10 9
35 35 H 1.08998 * 109.53475 * 169.30215 * 11 10 9
36 36 H 0.97002 * 120.00192 * 180.02562 * 16 15 13
37 37 H 1.08998 * 109.61149 * 295.47754 * 21 12 11
38 38 H 1.09007 * 109.74619 * 175.05512 * 21 12 11
39 39 H 1.08998 * 109.60792 * 354.94379 * 22 9 6
40 40 H 1.08997 * 109.61187 * 115.45131 * 22 9 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1845 0.0006
5 6 4.1579 2.5822 0.0000
6 16 5.9663 2.4388 0.0000
7 8 6.4247 1.9111 1.2372
8 8 6.4245 1.9100 -1.2367
9 7 6.5049 4.0048 0.0000
10 6 6.7540 4.7101 -1.2650
11 6 5.9335 6.0111 -1.2653
12 7 6.1768 6.7184 -0.0002
13 6 6.6222 8.0132 -0.0002
14 1 7.2089 8.3825 -0.8284
15 6 6.3196 8.8513 1.0642
16 7 7.0482 9.9252 1.2839
17 14 4.8786 8.4549 2.1847
18 1 5.3611 7.6809 3.3566
19 1 4.2513 9.7180 2.6499
20 1 3.8778 7.6508 1.4383
21 6 5.9330 6.0112 1.2648
22 6 6.7482 4.7121 1.2651
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3632 0.5139 0.8900
26 1 1.6887 1.8463 0.8900
27 1 1.6887 1.8463 -0.8900
28 1 3.8568 0.6437 0.8908
29 1 3.8576 0.6434 -0.8891
30 1 3.8366 3.1226 -0.8904
31 1 3.8360 3.1237 0.8896
32 1 7.8153 4.9437 -1.3508
33 1 6.4465 4.0817 -2.1010
34 1 4.8727 5.7773 -1.3556
35 1 6.2448 6.6381 -2.1007
36 1 6.8370 10.5107 2.0279
37 1 4.8722 5.7775 1.3547
38 1 6.2419 6.6371 2.1021
39 1 6.4369 4.0850 2.1005
40 1 7.8090 4.9458 1.3554
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000103882156.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:08:28
Heat of formation + Delta-G solvation = -83.568969 kcal
Electronic energy + Delta-G solvation = -22538.859889 eV
Core-core repulsion = 19096.265052 eV
Total energy + Delta-G solvation = -3442.594837 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 292.129 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-38.33258 -37.97808 -37.10626 -35.89981 -34.27010 -33.96348 -31.43213 -30.78503
-28.07275 -26.68421 -25.78820 -23.61918 -23.03960 -22.22790 -20.31474 -18.72444
-17.81589 -17.07405 -16.75627 -16.43373 -15.98576 -15.91569 -15.33893 -15.08010
-14.73679 -14.33663 -14.17066 -13.97446 -13.47867 -12.93088 -12.81289 -12.77140
-12.45668 -12.44003 -12.29825 -12.04231 -11.76750 -11.64563 -11.53731 -11.44426
-11.16321 -10.95417 -10.79956 -10.45000 -10.32075 -10.02838 -9.94891 -9.60881
-9.11294 -8.55632 -7.05499 -6.04178 -3.41211 0.26354 2.69359 3.21986
3.33241 3.38790 3.41345 3.90690 4.11046 4.42570 4.43711 4.51983
4.68783 4.79281 4.91920 4.96321 5.00501 5.03333 5.14405 5.27979
5.30654 5.35848 5.51210 5.55848 5.63739 5.68187 5.82381 5.86257
5.97627 6.20246 6.26649 6.43906 6.45210 6.70356 6.77277 6.87576
7.84034 8.23546 8.82341 9.61110 9.97665 11.11612
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.018351 B = 0.004773 C = 0.004170
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1525.444012 B = 5864.572970 C = 6712.750990
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.394 6.394
3 C 0.068 3.932
4 C -0.109 4.109
5 C -0.636 4.636
6 S 2.611 3.389
7 O -0.956 6.956
8 O -0.957 6.957
9 N -0.990 5.990
10 C 0.103 3.897
11 C 0.133 3.867
12 N -0.602 5.602
13 C -0.263 4.263
14 H 0.088 0.912
15 C 0.025 3.975
16 N -0.905 5.905
17 Si 0.880 3.120
18 H -0.286 1.286
19 H -0.302 1.302
20 H -0.271 1.271
21 C 0.110 3.890
22 C 0.105 3.895
23 H 0.042 0.958
24 H 0.087 0.913
25 H 0.042 0.958
26 H 0.055 0.945
27 H 0.055 0.945
28 H 0.086 0.914
29 H 0.086 0.914
30 H 0.135 0.865
31 H 0.134 0.866
32 H 0.075 0.925
33 H 0.083 0.917
34 H 0.026 0.974
35 H 0.076 0.924
36 H 0.264 0.736
37 H 0.028 0.972
38 H 0.084 0.916
39 H 0.082 0.918
40 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.071 -16.160 -2.718 19.234
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.313 6.313
3 C -0.009 4.009
4 C -0.148 4.148
5 C -0.764 4.764
6 S 2.703 3.297
7 O -0.946 6.946
8 O -0.947 6.947
9 N -0.828 5.828
10 C -0.024 4.024
11 C 0.006 3.994
12 N -0.326 5.326
13 C -0.392 4.392
14 H 0.105 0.895
15 C -0.175 4.175
16 N -0.547 5.547
17 Si 0.710 3.290
18 H -0.214 1.214
19 H -0.230 1.230
20 H -0.197 1.197
21 C -0.017 4.017
22 C -0.022 4.022
23 H 0.061 0.939
24 H 0.105 0.895
25 H 0.061 0.939
26 H 0.073 0.927
27 H 0.073 0.927
28 H 0.105 0.895
29 H 0.105 0.895
30 H 0.153 0.847
31 H 0.152 0.848
32 H 0.093 0.907
33 H 0.101 0.899
34 H 0.044 0.956
35 H 0.095 0.905
36 H 0.074 0.926
37 H 0.046 0.954
38 H 0.101 0.899
39 H 0.100 0.900
40 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -9.377 -16.904 -2.640 19.510
hybrid contribution -1.728 0.727 0.769 2.026
sum -11.105 -16.177 -1.871 19.711
Atomic orbital electron populations
1.22759 0.80731 1.02870 1.00157 1.87857 1.19966 1.27947 1.95491
1.22476 0.92743 0.84736 1.00967 1.21155 0.95362 0.93502 1.04813
1.30741 1.28473 1.05021 1.12132 1.04994 0.77091 0.73372 0.74221
1.93578 1.78415 1.77412 1.45242 1.93572 1.78458 1.77377 1.45278
1.57451 1.80324 1.32013 1.13057 1.22170 1.01990 0.94889 0.83367
1.21426 0.95933 0.91961 0.90088 1.44202 1.78021 1.11184 0.99159
1.18931 1.27197 0.85067 1.07959 0.89490 1.25293 0.98305 0.95652
0.98205 1.69830 1.38282 1.15960 1.30637 0.86988 0.84997 0.76416
0.80568 1.21422 1.23001 1.19657 1.21758 0.96402 0.92561 0.90989
1.22080 1.02238 0.94570 0.83325 0.93931 0.89487 0.93944 0.92686
0.92656 0.89509 0.89497 0.84698 0.84777 0.90651 0.89853 0.95614
0.90539 0.92635 0.95394 0.89853 0.89984 0.90365
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.23 11.01 101.05 1.11 1.34 16
2 O -0.39 -4.18 10.70 -35.23 -0.38 -4.55 16
3 C 0.07 0.65 5.94 37.16 0.22 0.87 16
4 C -0.11 -1.12 5.59 -26.73 -0.15 -1.27 16
5 C -0.64 -6.63 6.18 37.16 0.23 -6.40 16
6 S 2.61 36.49 5.42 -107.50 -0.58 35.91 16
7 O -0.96 -15.77 16.70 -57.54 -0.96 -16.73 16
8 O -0.96 -15.33 16.69 -57.54 -0.96 -16.29 16
9 N -0.99 -15.33 3.19 -113.00 -0.36 -15.69 16
10 C 0.10 1.57 6.52 -3.37 -0.02 1.55 16
11 C 0.13 2.34 6.69 -3.37 -0.02 2.32 16
12 N -0.60 -13.26 2.74 -171.76 -0.47 -13.73 16
13 C -0.26 -6.97 10.03 -15.06 -0.15 -7.12 16
14 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16
15 C 0.02 0.69 5.23 -17.43 -0.09 0.59 16
16 N -0.90 -26.81 13.97 55.49 0.78 -26.03 16
17 Si 0.88 21.16 24.37 -169.99 -4.14 17.02 16
18 H -0.29 -6.59 6.64 56.52 0.38 -6.21 16
19 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16
20 H -0.27 -6.32 6.63 56.52 0.37 -5.95 16
21 C 0.11 2.20 4.36 -3.60 -0.02 2.19 16
22 C 0.10 1.77 6.48 -3.60 -0.02 1.75 16
23 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16
24 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
25 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16
26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16
29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16
30 H 0.13 1.20 8.14 -51.92 -0.42 0.78 16
31 H 0.13 1.27 8.14 -51.92 -0.42 0.85 16
32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16
33 H 0.08 1.08 7.05 -51.93 -0.37 0.71 16
34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16
35 H 0.08 1.31 7.93 -51.93 -0.41 0.90 16
36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
37 H 0.03 0.53 7.18 -51.93 -0.37 0.16 16
38 H 0.08 1.83 4.41 -51.93 -0.23 1.60 16
39 H 0.08 1.22 7.06 -51.93 -0.37 0.85 16
40 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16
LS Contribution 329.91 15.07 4.97 4.97
Total: -1.00 -33.63 329.91 -7.45 -41.08
By element:
Atomic # 1 Polarization: 4.67 SS G_CDS: -6.43 Total: -1.77 kcal
Atomic # 6 Polarization: -5.26 SS G_CDS: 1.09 Total: -4.18 kcal
Atomic # 7 Polarization: -55.40 SS G_CDS: -0.06 Total: -55.46 kcal
Atomic # 8 Polarization: -35.28 SS G_CDS: -2.30 Total: -37.57 kcal
Atomic # 14 Polarization: 21.16 SS G_CDS: -4.14 Total: 17.02 kcal
Atomic # 16 Polarization: 36.49 SS G_CDS: -0.58 Total: 35.91 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -33.63 -7.45 -41.08 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000103882156.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.492 kcal
(2) G-P(sol) polarization free energy of solvation -33.625 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.118 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.569 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds