Wall clock time and date at job start Tue Mar 31 2020 03:08:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42897 * 114.00344 * 2 1
4 4 C 1.52999 * 109.47156 * 179.97438 * 3 2 1
5 5 C 1.52999 * 109.47196 * 179.97438 * 4 3 2
6 6 S 1.81406 * 109.47101 * 180.02562 * 5 4 3
7 7 O 1.42101 * 110.54218 * 291.62398 * 6 5 4
8 8 O 1.42095 * 110.54056 * 68.37611 * 6 5 4
9 9 N 1.65602 * 104.44655 * 180.02562 * 6 5 4
10 10 C 1.46964 * 120.59412 * 269.71885 * 9 6 5
11 11 C 1.53812 * 108.39920 * 124.76039 * 10 9 6
12 12 N 1.46967 * 108.57727 * 49.63909 * 11 10 9
13 13 C 1.36929 * 120.59424 * 124.67022 * 12 11 10
14 14 H 1.08000 * 120.00324 * 332.30529 * 13 12 11
15 15 C 1.38819 * 120.00221 * 152.30231 * 13 12 11
16 16 N 1.31614 * 119.99909 * 159.30472 * 15 13 12
17 17 Si 1.86796 * 119.99821 * 339.30821 * 15 13 12
18 18 H 1.48503 * 109.47114 * 93.71715 * 17 15 13
19 19 H 1.48500 * 109.46987 * 213.71790 * 17 15 13
20 20 H 1.48502 * 109.47220 * 333.71700 * 17 15 13
21 21 C 1.46967 * 118.80892 * 304.64549 * 12 11 10
22 22 C 1.46967 * 120.59438 * 90.00335 * 9 6 5
23 23 H 1.09004 * 109.46752 * 59.99711 * 1 2 3
24 24 H 1.08994 * 109.47251 * 180.02562 * 1 2 3
25 25 H 1.09006 * 109.46521 * 300.00364 * 1 2 3
26 26 H 1.08999 * 109.47164 * 60.00075 * 3 2 1
27 27 H 1.08999 * 109.47109 * 300.00093 * 3 2 1
28 28 H 1.08999 * 109.47196 * 300.00050 * 4 3 2
29 29 H 1.09003 * 109.47458 * 59.99795 * 4 3 2
30 30 H 1.08999 * 109.47238 * 300.00207 * 5 4 3
31 31 H 1.09008 * 109.46994 * 60.00391 * 5 4 3
32 32 H 1.09007 * 109.60903 * 244.54447 * 10 9 6
33 33 H 1.09005 * 109.61061 * 5.05568 * 10 9 6
34 34 H 1.09003 * 109.74123 * 289.84907 * 11 10 9
35 35 H 1.08998 * 109.53475 * 169.30215 * 11 10 9
36 36 H 0.97002 * 120.00192 * 180.02562 * 16 15 13
37 37 H 1.08998 * 109.61149 * 295.47754 * 21 12 11
38 38 H 1.09007 * 109.74619 * 175.05512 * 21 12 11
39 39 H 1.08998 * 109.60792 * 354.94379 * 22 9 6
40 40 H 1.08997 * 109.61187 * 115.45131 * 22 9 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1845 0.0006
5 6 4.1579 2.5822 0.0000
6 16 5.9663 2.4388 0.0000
7 8 6.4247 1.9111 1.2372
8 8 6.4245 1.9100 -1.2367
9 7 6.5049 4.0048 0.0000
10 6 6.7540 4.7101 -1.2650
11 6 5.9335 6.0111 -1.2653
12 7 6.1768 6.7184 -0.0002
13 6 6.6222 8.0132 -0.0002
14 1 7.2089 8.3825 -0.8284
15 6 6.3196 8.8513 1.0642
16 7 7.0482 9.9252 1.2839
17 14 4.8786 8.4549 2.1847
18 1 5.3611 7.6809 3.3566
19 1 4.2513 9.7180 2.6499
20 1 3.8778 7.6508 1.4383
21 6 5.9330 6.0112 1.2648
22 6 6.7482 4.7121 1.2651
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3632 0.5139 0.8900
26 1 1.6887 1.8463 0.8900
27 1 1.6887 1.8463 -0.8900
28 1 3.8568 0.6437 0.8908
29 1 3.8576 0.6434 -0.8891
30 1 3.8366 3.1226 -0.8904
31 1 3.8360 3.1237 0.8896
32 1 7.8153 4.9437 -1.3508
33 1 6.4465 4.0817 -2.1010
34 1 4.8727 5.7773 -1.3556
35 1 6.2448 6.6381 -2.1007
36 1 6.8370 10.5107 2.0279
37 1 4.8722 5.7775 1.3547
38 1 6.2419 6.6371 2.1021
39 1 6.4369 4.0850 2.1005
40 1 7.8090 4.9458 1.3554
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000103882156.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:08:27
Heat of formation + Delta-G solvation = -110.100774 kcal
Electronic energy + Delta-G solvation = -22540.010395 eV
Core-core repulsion = 19096.265052 eV
Total energy + Delta-G solvation = -3443.745343 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 292.129 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-39.42836 -38.99783 -38.28465 -37.07710 -35.62196 -35.02828 -33.31403 -32.20159
-28.73854 -28.33554 -26.45507 -25.12714 -24.61878 -23.06867 -21.72268 -19.98526
-19.16426 -18.23569 -17.80340 -17.56339 -17.06450 -16.90705 -16.82555 -15.96627
-15.90238 -15.73027 -15.45138 -15.18398 -14.95326 -14.55522 -14.17386 -13.69649
-13.62882 -13.43691 -13.21669 -13.18790 -13.14280 -13.09564 -12.73447 -12.43376
-12.19798 -12.16493 -12.14434 -11.93517 -11.76954 -11.55677 -11.43095 -10.81807
-10.65779 -10.13921 -8.83476 -8.13662 -5.46282 -0.81004 1.33278 1.44679
1.52874 1.57758 2.44653 2.61318 2.94575 3.07118 3.09027 3.37067
3.60788 3.71798 3.74806 4.03128 4.15234 4.22274 4.38455 4.40532
4.45093 4.47042 4.49153 4.52874 4.61277 4.64716 4.73170 4.84646
4.85257 4.88886 4.92730 5.05218 5.10945 5.36001 5.57304 5.88382
6.16090 6.17157 6.93037 7.63878 8.03673 9.06200
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.018351 B = 0.004773 C = 0.004170
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1525.444012 B = 5864.572970 C = 6712.750990
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.419 6.419
3 C 0.065 3.935
4 C -0.118 4.118
5 C -0.611 4.611
6 S 2.615 3.385
7 O -0.986 6.986
8 O -0.981 6.981
9 N -0.995 5.995
10 C 0.108 3.892
11 C 0.129 3.871
12 N -0.618 5.618
13 C -0.248 4.248
14 H 0.051 0.949
15 C -0.038 4.038
16 N -0.959 5.959
17 Si 0.945 3.055
18 H -0.271 1.271
19 H -0.316 1.316
20 H -0.251 1.251
21 C 0.103 3.897
22 C 0.112 3.888
23 H 0.052 0.948
24 H 0.097 0.903
25 H 0.050 0.950
26 H 0.065 0.935
27 H 0.068 0.932
28 H 0.084 0.916
29 H 0.087 0.913
30 H 0.160 0.840
31 H 0.154 0.846
32 H 0.060 0.940
33 H 0.113 0.887
34 H 0.055 0.945
35 H 0.071 0.929
36 H 0.261 0.739
37 H 0.053 0.947
38 H 0.061 0.939
39 H 0.107 0.893
40 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.770 -18.236 -2.724 22.429
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.339 6.339
3 C -0.012 4.012
4 C -0.157 4.157
5 C -0.743 4.743
6 S 2.713 3.287
7 O -0.976 6.976
8 O -0.972 6.972
9 N -0.832 5.832
10 C -0.019 4.019
11 C 0.002 3.998
12 N -0.342 5.342
13 C -0.378 4.378
14 H 0.069 0.931
15 C -0.232 4.232
16 N -0.605 5.605
17 Si 0.773 3.227
18 H -0.197 1.197
19 H -0.246 1.246
20 H -0.174 1.174
21 C -0.023 4.023
22 C -0.016 4.016
23 H 0.070 0.930
24 H 0.115 0.885
25 H 0.069 0.931
26 H 0.083 0.917
27 H 0.086 0.914
28 H 0.103 0.897
29 H 0.106 0.894
30 H 0.178 0.822
31 H 0.172 0.828
32 H 0.079 0.921
33 H 0.131 0.869
34 H 0.073 0.927
35 H 0.090 0.910
36 H 0.070 0.930
37 H 0.071 0.929
38 H 0.079 0.921
39 H 0.125 0.875
40 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -12.043 -19.042 -2.668 22.688
hybrid contribution -0.888 1.274 0.666 1.690
sum -12.931 -17.768 -2.002 22.066
Atomic orbital electron populations
1.22947 0.79243 1.03938 1.01022 1.87817 1.21685 1.28684 1.95691
1.22535 0.91885 0.84685 1.02118 1.21257 0.96302 0.93227 1.04957
1.30475 1.23384 1.05941 1.14474 1.04742 0.78667 0.72254 0.73055
1.93540 1.80206 1.77684 1.46213 1.93540 1.80160 1.77508 1.45962
1.57439 1.81296 1.32103 1.12361 1.22075 1.00898 0.94445 0.84446
1.21639 0.97867 0.92305 0.87945 1.44322 1.78346 1.09975 1.01592
1.18858 1.25528 0.87122 1.06301 0.93079 1.25957 1.00875 0.95854
1.00560 1.69983 1.40420 1.17979 1.32150 0.85934 0.81599 0.75880
0.79276 1.19747 1.24557 1.17436 1.21859 0.98093 0.93157 0.89194
1.21871 1.00873 0.93874 0.84946 0.92971 0.88490 0.93130 0.91675
0.91356 0.89693 0.89405 0.82200 0.82794 0.92139 0.86941 0.92727
0.91008 0.93047 0.92944 0.92130 0.87540 0.91996
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.29 11.01 113.37 1.25 1.54 16
2 O -0.42 -7.73 10.70 -148.98 -1.59 -9.33 16
3 C 0.07 1.00 5.94 71.98 0.43 1.43 16
4 C -0.12 -2.00 5.59 30.59 0.17 -1.83 16
5 C -0.61 -9.92 6.18 71.98 0.44 -9.48 16
6 S 2.62 65.71 5.42 -56.49 -0.31 65.41 16
7 O -0.99 -30.45 16.70 -127.65 -2.13 -32.59 16
8 O -0.98 -29.19 16.69 -127.65 -2.13 -31.32 16
9 N -0.99 -28.23 3.19 -511.43 -1.63 -29.86 16
10 C 0.11 3.07 6.52 86.56 0.56 3.64 16
11 C 0.13 4.22 6.69 86.56 0.58 4.80 16
12 N -0.62 -26.39 2.74 -697.34 -1.91 -28.30 16
13 C -0.25 -13.33 10.03 84.04 0.84 -12.49 16
14 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16
15 C -0.04 -2.12 5.23 84.86 0.44 -1.68 16
16 N -0.96 -58.83 13.97 21.65 0.30 -58.53 16
17 Si 0.94 43.34 24.37 68.60 1.67 45.01 16
18 H -0.27 -11.61 6.64 99.48 0.66 -10.95 16
19 H -0.32 -15.13 7.11 99.48 0.71 -14.42 16
20 H -0.25 -10.50 6.63 99.48 0.66 -9.84 16
21 C 0.10 3.88 4.36 86.41 0.38 4.26 16
22 C 0.11 3.54 6.48 86.41 0.56 4.10 16
23 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16
24 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16
25 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16
26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16
29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16
30 H 0.16 1.92 8.14 -2.39 -0.02 1.90 16
31 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16
32 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16
33 H 0.11 2.57 7.05 -2.38 -0.02 2.55 16
34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16
35 H 0.07 2.39 7.93 -2.39 -0.02 2.37 16
36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16
37 H 0.05 1.73 7.18 -2.39 -0.02 1.72 16
38 H 0.06 2.56 4.41 -2.38 -0.01 2.55 16
39 H 0.11 2.85 7.06 -2.39 -0.02 2.84 16
40 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16
Total: -1.00 -73.95 329.91 -1.15 -75.10
By element:
Atomic # 1 Polarization: 9.20 SS G_CDS: 0.92 Total: 10.12 kcal
Atomic # 6 Polarization: -11.37 SS G_CDS: 5.66 Total: -5.71 kcal
Atomic # 7 Polarization: -113.45 SS G_CDS: -3.24 Total: -116.69 kcal
Atomic # 8 Polarization: -67.38 SS G_CDS: -5.86 Total: -73.24 kcal
Atomic # 14 Polarization: 43.34 SS G_CDS: 1.67 Total: 45.01 kcal
Atomic # 16 Polarization: 65.71 SS G_CDS: -0.31 Total: 65.41 kcal
Total: -73.95 -1.15 -75.10 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000103882156.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.003 kcal
(2) G-P(sol) polarization free energy of solvation -73.947 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.950 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.151 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.098 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.101 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds