Wall clock time and date at job start Tue Mar 31 2020 03:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00131 * 2 1 4 4 C 1.50702 * 109.47036 * 275.00130 * 3 2 1 5 5 H 1.07998 * 119.99857 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99893 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00011 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99932 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47449 * 59.99619 * 8 6 4 10 10 H 1.48500 * 109.47040 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46887 * 299.99531 * 8 6 4 12 12 S 1.65596 * 120.00156 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.40345 * 336.46084 * 12 2 1 14 14 O 1.42094 * 106.40745 * 203.53916 * 12 2 1 15 15 N 1.65606 * 107.21969 * 89.99975 * 12 2 1 16 16 C 1.46499 * 120.00003 * 89.99706 * 15 12 2 17 17 C 1.46502 * 119.99935 * 270.00204 * 15 12 2 18 18 C 1.52991 * 109.47137 * 264.99629 * 17 15 12 19 19 H 1.09005 * 109.47209 * 60.00145 * 18 17 15 20 20 O 1.42902 * 109.47180 * 299.99969 * 18 17 15 21 21 C 1.53001 * 109.47183 * 180.02562 * 18 17 15 22 22 C 1.52999 * 117.49869 * 248.74740 * 21 18 17 23 23 C 1.53001 * 117.49992 * 180.08656 * 21 18 17 24 24 H 1.09006 * 109.47014 * 270.00054 * 1 2 3 25 25 H 1.09002 * 109.47259 * 29.99818 * 1 2 3 26 26 H 1.09002 * 109.47274 * 150.00540 * 1 2 3 27 27 H 1.09006 * 109.46973 * 34.99949 * 3 2 1 28 28 H 1.08996 * 109.47498 * 155.00006 * 3 2 1 29 29 H 0.97004 * 119.99659 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47391 * 270.00374 * 16 15 12 31 31 H 1.09001 * 109.46813 * 150.00430 * 16 15 12 32 32 H 1.09004 * 109.47041 * 30.00557 * 16 15 12 33 33 H 1.08999 * 109.47026 * 24.99991 * 17 15 12 34 34 H 1.09005 * 109.46953 * 144.99617 * 17 15 12 35 35 H 0.96697 * 113.99921 * 299.99940 * 20 18 17 36 36 H 1.09001 * 115.54941 * 34.41774 * 21 18 17 37 37 H 1.08998 * 117.50042 * 359.97438 * 22 21 18 38 38 H 1.09001 * 117.49685 * 145.01963 * 22 21 18 39 39 H 1.09001 * 117.50198 * 214.98041 * 23 21 18 40 40 H 1.09001 * 117.50214 * 0.02562 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9288 1.1934 -2.2332 6 6 2.9997 2.9508 -1.6664 7 7 3.5016 3.6479 -0.6705 8 14 3.1774 3.5672 -3.4208 9 1 1.8309 3.7726 -4.0122 10 1 3.9201 4.8532 -3.4208 11 1 3.9234 2.5654 -4.2241 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4062 0.5455 14 8 3.5759 -1.1566 0.5449 15 7 2.5381 -1.8594 -1.5810 16 6 3.7452 -1.4130 -2.2809 17 6 1.5478 -2.6818 -2.2803 18 6 1.9599 -4.1531 -2.2019 19 1 2.0146 -4.4600 -1.1573 20 8 3.2390 -4.3229 -2.8159 21 6 0.9259 -5.0120 -2.9328 22 6 0.0517 -5.9389 -2.0857 23 6 1.1594 -6.5237 -2.9655 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6501 2.0043 0.5895 28 1 3.1857 1.1177 0.4343 29 1 3.9644 4.4819 -0.8470 30 1 3.5538 -0.4524 -2.7590 31 1 4.0187 -2.1477 -3.0382 32 1 4.5614 -1.3069 -1.5661 33 1 0.5720 -2.5523 -1.8120 34 1 1.4930 -2.3750 -3.3248 35 1 3.2644 -4.0688 -3.7485 36 1 0.4704 -4.5540 -3.8107 37 1 0.2134 -5.9371 -1.0078 38 1 -0.9788 -6.0909 -2.4066 39 1 0.8572 -7.0604 -3.8648 40 1 2.0494 -6.9065 -2.4660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120113487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:03 Heat of formation + Delta-G solvation = -98.060586 kcal Electronic energy + Delta-G solvation = -23128.206248 eV Core-core repulsion = 19684.983007 eV Total energy + Delta-G solvation = -3443.223241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.87235 -36.66485 -36.05009 -35.46961 -35.18448 -34.70575 -32.49246 -29.49221 -27.79080 -25.57071 -25.06107 -23.08334 -22.45732 -22.23057 -20.95991 -18.37149 -17.32394 -16.89264 -16.54533 -16.26464 -16.18150 -15.51924 -15.11786 -14.64123 -14.26453 -13.95291 -13.43170 -13.32473 -13.23588 -12.66437 -12.40928 -12.26877 -12.18924 -11.81948 -11.68014 -11.65074 -11.22817 -11.19634 -11.15857 -11.12091 -11.05763 -10.77059 -10.64050 -10.51040 -10.38279 -10.13232 -10.08670 -9.79916 -8.53947 -8.47164 -8.02730 -6.11858 -4.18683 1.27921 3.23897 3.29899 3.30525 3.45254 3.58819 4.08296 4.34676 4.45006 4.47533 4.74910 4.90475 4.95898 5.00019 5.09851 5.22049 5.30143 5.48156 5.51221 5.63792 5.70036 5.74383 5.87264 5.99847 6.05760 6.11580 6.18606 6.23211 6.38893 6.49717 6.55908 6.93843 7.33814 7.43571 7.63905 7.65183 7.84842 8.14496 8.85578 9.46967 10.96194 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.020344 B = 0.005392 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.004555 B = 5191.181849 C = 5745.198212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.998 5.998 3 C 0.244 3.756 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.895 3.105 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.786 3.214 13 O -1.000 7.000 14 O -0.976 6.976 15 N -0.999 5.999 16 C 0.093 3.907 17 C 0.103 3.897 18 C 0.117 3.883 19 H 0.104 0.896 20 O -0.550 6.550 21 C -0.192 4.192 22 C -0.173 4.173 23 C -0.167 4.167 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.265 0.735 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.370 0.630 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.935 -14.201 -6.160 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.840 5.840 3 C 0.122 3.878 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.201 1.201 12 S 2.795 3.205 13 O -0.984 6.984 14 O -0.960 6.960 15 N -0.837 5.837 16 C -0.052 4.052 17 C -0.024 4.024 18 C 0.056 3.944 19 H 0.121 0.879 20 O -0.355 6.355 21 C -0.212 4.212 22 C -0.210 4.210 23 C -0.204 4.204 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.217 0.783 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.370 -14.680 -4.742 16.335 hybrid contribution -0.327 0.997 -1.988 2.248 sum -5.697 -13.683 -6.730 16.278 Atomic orbital electron populations 1.21214 0.80262 1.01900 1.00590 1.57695 1.14113 1.23582 1.88608 1.19214 0.92183 0.78888 0.97531 1.21496 1.36647 1.06795 0.92879 0.92008 1.24957 0.95218 0.96516 0.97189 1.69927 1.36701 1.15143 1.30975 0.86628 0.78179 0.78239 0.84737 1.20321 1.21196 1.20081 1.01776 0.73068 0.72653 0.73017 1.93519 1.67455 1.60347 1.77084 1.93560 1.40764 1.85211 1.76455 1.57699 1.29505 1.64058 1.32439 1.21552 0.85852 0.99724 0.98121 1.21782 0.91773 0.89942 0.98919 1.22060 0.81991 0.93169 0.97183 0.87860 1.86634 1.31156 1.89037 1.28624 1.23020 1.02490 0.92989 1.02656 1.22989 0.96094 1.03415 0.98479 1.22848 1.00745 0.94688 1.02107 0.93766 0.90848 0.93127 0.94507 0.93132 0.92512 0.91791 0.91534 0.90444 0.89661 0.90393 0.78317 0.87522 0.88272 0.88675 0.88950 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.84 10.31 59.84 0.62 2.46 16 2 N -1.00 -20.89 3.23 -123.05 -0.40 -21.29 16 3 C 0.24 6.10 5.41 -5.19 -0.03 6.07 16 4 C -0.54 -13.92 9.22 -34.44 -0.32 -14.24 16 5 H 0.06 1.53 7.71 -52.49 -0.40 1.13 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 8 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 S 2.79 56.73 6.02 -107.50 -0.65 56.08 16 13 O -1.00 -20.34 16.18 -57.18 -0.93 -21.26 16 14 O -0.98 -23.33 15.29 -57.18 -0.87 -24.20 16 15 N -1.00 -16.89 3.20 -121.76 -0.39 -17.28 16 16 C 0.09 1.54 10.40 59.85 0.62 2.16 16 17 C 0.10 1.37 5.05 -4.05 -0.02 1.35 16 18 C 0.12 1.46 3.43 -26.74 -0.09 1.36 16 19 H 0.10 1.52 7.90 -51.93 -0.41 1.11 16 20 O -0.55 -6.76 11.60 -35.23 -0.41 -7.17 16 21 C -0.19 -1.90 5.36 -90.62 -0.49 -2.39 16 22 C -0.17 -1.65 10.18 -26.69 -0.27 -1.92 16 23 C -0.17 -1.53 10.16 -26.69 -0.27 -1.81 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 26 H 0.05 0.75 7.44 -51.93 -0.39 0.36 16 27 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 28 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.06 1.13 7.87 -51.93 -0.41 0.73 16 31 H 0.07 0.88 6.38 -51.93 -0.33 0.54 16 32 H 0.08 1.41 7.02 -51.93 -0.36 1.05 16 33 H 0.09 1.11 7.26 -51.93 -0.38 0.73 16 34 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 35 H 0.37 3.21 8.69 45.56 0.40 3.61 16 36 H 0.11 0.90 8.11 -51.93 -0.42 0.48 16 37 H 0.10 1.03 8.05 -51.93 -0.42 0.61 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 343.17 15.07 5.17 5.17 Total: -1.00 -31.97 343.17 -8.67 -40.65 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.57 Total: 3.84 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -0.34 Total: -5.33 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.05 Total: -63.10 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -2.21 Total: -52.63 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 56.73 SS G_CDS: -0.65 Total: 56.08 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.97 -8.67 -40.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120113487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.416 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds