Wall clock time and date at job start Tue Mar 31 2020 03:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00693 * 2 1 4 4 C 1.50701 * 109.46939 * 275.74045 * 3 2 1 5 5 H 1.07998 * 120.00196 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99669 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00049 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00468 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.46991 * 89.99681 * 8 6 4 10 10 H 1.48495 * 109.47380 * 209.99799 * 8 6 4 11 11 H 1.48500 * 109.47267 * 330.00220 * 8 6 4 12 12 S 1.65607 * 119.99559 * 179.97438 * 2 1 3 13 13 O 1.42103 * 106.39983 * 147.96107 * 12 2 1 14 14 O 1.42098 * 106.40026 * 15.04236 * 12 2 1 15 15 N 1.65592 * 107.21944 * 261.50080 * 12 2 1 16 16 C 1.46504 * 120.00177 * 271.58070 * 15 12 2 17 17 C 1.46501 * 120.00287 * 91.85615 * 15 12 2 18 18 C 1.52999 * 109.47252 * 246.48906 * 17 15 12 19 19 C 1.52997 * 115.55223 * 65.75217 * 18 17 15 20 20 O 1.42895 * 109.47202 * 294.09489 * 19 18 17 21 21 C 1.53002 * 117.49952 * 280.08735 * 18 17 15 22 22 C 1.52997 * 117.50033 * 211.42653 * 18 17 15 23 23 H 1.08998 * 109.47133 * 273.90976 * 1 2 3 24 24 H 1.09001 * 109.46677 * 33.90718 * 1 2 3 25 25 H 1.08994 * 109.47739 * 153.90614 * 1 2 3 26 26 H 1.09001 * 109.46636 * 35.73677 * 3 2 1 27 27 H 1.08999 * 109.47439 * 155.73915 * 3 2 1 28 28 H 0.96994 * 120.00610 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46986 * 270.27803 * 16 15 12 30 30 H 1.09004 * 109.46841 * 30.27286 * 16 15 12 31 31 H 1.08995 * 109.47200 * 150.27310 * 16 15 12 32 32 H 1.09000 * 109.46765 * 6.48513 * 17 15 12 33 33 H 1.09002 * 109.47108 * 126.48769 * 17 15 12 34 34 H 1.09005 * 109.47072 * 54.09224 * 19 18 17 35 35 H 1.09002 * 109.47521 * 174.08809 * 19 18 17 36 36 H 0.96705 * 114.00061 * 185.86138 * 20 19 18 37 37 H 1.09005 * 117.49504 * 359.97438 * 21 18 17 38 38 H 1.08996 * 117.50111 * 145.02269 * 21 18 17 39 39 H 1.08997 * 117.50264 * 214.97798 * 22 18 17 40 40 H 1.09012 * 117.49587 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3257 1.7747 -1.4137 5 1 1.9040 1.2078 -2.2305 6 6 2.9814 2.9614 -1.6643 7 7 3.0928 3.4033 -2.8980 8 14 3.7114 3.9416 -0.2517 9 1 5.1114 3.5050 -0.0178 10 1 3.6939 5.3871 -0.5910 11 1 2.9095 3.7117 0.9769 12 16 2.2929 -1.4343 0.0006 13 8 3.4943 -1.2043 -0.7226 14 8 1.3533 -2.4400 -0.3527 15 7 2.7404 -1.7412 1.5651 16 6 4.0093 -1.2203 2.0797 17 6 1.8703 -2.5388 2.4329 18 6 1.3264 -1.6572 3.5589 19 6 0.3872 -0.5318 3.1207 20 8 1.1130 0.4154 2.3346 21 6 2.2467 -1.3855 4.7506 22 6 1.0482 -2.3248 4.9071 23 1 -0.3633 0.0701 1.0253 24 1 -0.3633 0.8529 -0.5733 25 1 -0.3634 -0.9228 -0.4520 26 1 1.6569 2.0004 0.6002 27 1 3.1906 1.1148 0.4222 28 1 3.5543 4.2380 -3.0744 29 1 4.8009 -1.9475 1.8983 30 1 4.2510 -0.2862 1.5726 31 1 3.9203 -1.0397 3.1509 32 1 1.0400 -2.9357 1.8488 33 1 2.4408 -3.3634 2.8604 34 1 -0.4270 -0.9482 2.5275 35 1 -0.0215 -0.0360 4.0012 36 1 0.6033 1.2021 2.0969 37 1 3.2395 -1.8352 4.7326 38 1 2.1827 -0.4052 5.2227 39 1 0.1963 -1.9620 5.4821 40 1 1.2523 -3.3923 4.9918 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331782726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:51 Heat of formation + Delta-G solvation = -65.395792 kcal Electronic energy + Delta-G solvation = -24196.923332 eV Core-core repulsion = 20755.116543 eV Total energy + Delta-G solvation = -3441.806789 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.06428 -36.57306 -36.32078 -35.16655 -34.90347 -34.68253 -32.27952 -28.53734 -28.12251 -26.47176 -25.07636 -24.39401 -22.59016 -21.74299 -19.39096 -18.34025 -17.36938 -17.00326 -16.88197 -16.41925 -16.11580 -15.49520 -15.06678 -14.47773 -14.25549 -13.94218 -13.44333 -13.32869 -12.96599 -12.63591 -12.43095 -12.32109 -12.19297 -12.04550 -11.63624 -11.60061 -11.37700 -11.23663 -11.16960 -11.10493 -11.03618 -10.57095 -10.43222 -10.24993 -10.12843 -10.06534 -9.67337 -9.44226 -8.66662 -8.52356 -7.81191 -6.02083 -3.99963 1.34868 3.29926 3.35788 3.36431 3.39756 3.69834 4.19084 4.34855 4.42990 4.57287 4.64864 4.85852 5.05414 5.22721 5.26215 5.32750 5.39422 5.45326 5.50420 5.67304 5.70762 5.71968 5.78941 5.90120 5.91151 5.97873 6.07425 6.11438 6.28023 6.40789 6.53992 6.87768 6.92812 7.25150 7.60371 7.71032 7.86658 8.57694 9.05237 9.57879 11.11897 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.007009 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.337908 B = 3993.712279 C = 4416.160062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.968 5.968 3 C 0.247 3.753 4 C -0.529 4.529 5 H 0.076 0.924 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.264 1.264 12 S 2.787 3.213 13 O -0.966 6.966 14 O -1.003 7.003 15 N -0.996 5.996 16 C 0.099 3.901 17 C 0.162 3.838 18 C -0.141 4.141 19 C 0.106 3.894 20 O -0.544 6.544 21 C -0.162 4.162 22 C -0.165 4.165 23 H 0.042 0.958 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.028 0.972 27 H 0.022 0.978 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.039 0.961 36 H 0.379 0.621 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.242 -8.973 17.625 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.808 5.808 3 C 0.123 3.877 4 C -0.568 4.568 5 H 0.094 0.906 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.700 3.300 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.188 1.188 12 S 2.795 3.205 13 O -0.950 6.950 14 O -0.988 6.988 15 N -0.833 5.833 16 C -0.046 4.046 17 C 0.035 3.965 18 C -0.142 4.142 19 C 0.028 3.972 20 O -0.351 6.351 21 C -0.199 4.199 22 C -0.203 4.203 23 H 0.060 0.940 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.228 0.772 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.490 -9.798 16.818 19.975 hybrid contribution -0.079 1.397 1.023 1.733 sum -4.568 -8.401 17.841 20.242 Atomic orbital electron populations 1.21504 0.80570 1.03023 1.00223 1.57065 1.13611 1.22065 1.88079 1.19170 0.90480 0.80927 0.97124 1.21525 1.36237 1.06540 0.92525 0.90620 1.24882 0.95579 0.97285 0.95398 1.69907 1.43064 1.21788 1.18964 0.86916 0.80441 0.79484 0.83186 1.20052 1.21300 1.18818 1.01819 0.73111 0.72787 0.72748 1.93630 1.46976 1.85622 1.68768 1.93485 1.64282 1.58476 1.82528 1.57851 1.28256 1.65662 1.31546 1.21403 0.83822 0.98775 1.00639 1.20643 0.93687 0.91289 0.90854 1.21903 1.02364 0.99691 0.90285 1.21550 0.92540 0.89242 0.93852 1.86826 1.42819 1.33244 1.72252 1.22964 0.95069 1.00651 1.01182 1.23000 1.00423 0.98951 0.97952 0.94000 0.90937 0.91871 0.95390 0.96004 0.92695 0.93629 0.91046 0.91209 0.88814 0.91433 0.93222 0.94281 0.77177 0.88617 0.88771 0.88738 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.51 9.69 59.84 0.58 2.09 16 2 N -0.97 -19.07 1.61 -123.06 -0.20 -19.27 16 3 C 0.25 5.59 2.94 -5.19 -0.02 5.57 16 4 C -0.53 -14.96 9.93 -34.44 -0.34 -15.30 16 5 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 8 Si 0.87 20.99 27.47 -169.99 -4.67 16.32 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 12 S 2.79 56.45 5.91 -107.50 -0.64 55.81 16 13 O -0.97 -23.90 16.55 -57.17 -0.95 -24.85 16 14 O -1.00 -21.03 15.05 -57.17 -0.86 -21.89 16 15 N -1.00 -15.57 2.38 -121.75 -0.29 -15.86 16 16 C 0.10 1.44 10.18 59.85 0.61 2.05 16 17 C 0.16 2.02 5.71 -4.04 -0.02 2.00 16 18 C -0.14 -1.48 1.88 -154.51 -0.29 -1.77 16 19 C 0.11 1.13 6.26 37.16 0.23 1.36 16 20 O -0.54 -7.11 7.44 -35.23 -0.26 -7.37 16 21 C -0.16 -1.51 8.46 -26.69 -0.23 -1.73 16 22 C -0.17 -1.33 9.91 -26.69 -0.26 -1.60 16 23 H 0.04 0.52 3.71 -51.93 -0.19 0.33 16 24 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 25 H 0.06 1.03 6.90 -51.93 -0.36 0.67 16 26 H 0.03 0.59 5.88 -51.93 -0.31 0.28 16 27 H 0.02 0.51 6.11 -51.93 -0.32 0.20 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.18 6.71 -51.93 -0.35 0.83 16 31 H 0.07 0.84 5.06 -51.93 -0.26 0.58 16 32 H 0.09 1.24 6.79 -51.93 -0.35 0.88 16 33 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 34 H 0.05 0.51 6.85 -51.93 -0.36 0.16 16 35 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 36 H 0.38 4.39 6.67 45.56 0.30 4.70 16 37 H 0.10 0.87 7.09 -51.93 -0.37 0.50 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.70 8.14 -51.92 -0.42 0.27 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -35.05 316.52 -7.25 -42.30 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.10 Total: 2.43 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 0.16 Total: -5.38 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.29 Total: -62.15 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -2.07 Total: -54.11 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Atomic # 16 Polarization: 56.45 SS G_CDS: -0.64 Total: 55.81 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.05 -7.25 -42.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331782726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.097 kcal (2) G-P(sol) polarization free energy of solvation -35.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds