Wall clock time and date at job start Tue Mar 31 2020 03:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00693 * 2 1 4 4 C 1.50701 * 109.46939 * 275.74045 * 3 2 1 5 5 H 1.07998 * 120.00196 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99669 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00049 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00468 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.46991 * 89.99681 * 8 6 4 10 10 H 1.48495 * 109.47380 * 209.99799 * 8 6 4 11 11 H 1.48500 * 109.47267 * 330.00220 * 8 6 4 12 12 S 1.65607 * 119.99559 * 179.97438 * 2 1 3 13 13 O 1.42103 * 106.39983 * 147.96107 * 12 2 1 14 14 O 1.42098 * 106.40026 * 15.04236 * 12 2 1 15 15 N 1.65592 * 107.21944 * 261.50080 * 12 2 1 16 16 C 1.46504 * 120.00177 * 271.58070 * 15 12 2 17 17 C 1.46501 * 120.00287 * 91.85615 * 15 12 2 18 18 C 1.52999 * 109.47252 * 246.48906 * 17 15 12 19 19 C 1.52997 * 115.55223 * 65.75217 * 18 17 15 20 20 O 1.42895 * 109.47202 * 294.09489 * 19 18 17 21 21 C 1.53002 * 117.49952 * 280.08735 * 18 17 15 22 22 C 1.52997 * 117.50033 * 211.42653 * 18 17 15 23 23 H 1.08998 * 109.47133 * 273.90976 * 1 2 3 24 24 H 1.09001 * 109.46677 * 33.90718 * 1 2 3 25 25 H 1.08994 * 109.47739 * 153.90614 * 1 2 3 26 26 H 1.09001 * 109.46636 * 35.73677 * 3 2 1 27 27 H 1.08999 * 109.47439 * 155.73915 * 3 2 1 28 28 H 0.96994 * 120.00610 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46986 * 270.27803 * 16 15 12 30 30 H 1.09004 * 109.46841 * 30.27286 * 16 15 12 31 31 H 1.08995 * 109.47200 * 150.27310 * 16 15 12 32 32 H 1.09000 * 109.46765 * 6.48513 * 17 15 12 33 33 H 1.09002 * 109.47108 * 126.48769 * 17 15 12 34 34 H 1.09005 * 109.47072 * 54.09224 * 19 18 17 35 35 H 1.09002 * 109.47521 * 174.08809 * 19 18 17 36 36 H 0.96705 * 114.00061 * 185.86138 * 20 19 18 37 37 H 1.09005 * 117.49504 * 359.97438 * 21 18 17 38 38 H 1.08996 * 117.50111 * 145.02269 * 21 18 17 39 39 H 1.08997 * 117.50264 * 214.97798 * 22 18 17 40 40 H 1.09012 * 117.49587 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3257 1.7747 -1.4137 5 1 1.9040 1.2078 -2.2305 6 6 2.9814 2.9614 -1.6643 7 7 3.0928 3.4033 -2.8980 8 14 3.7114 3.9416 -0.2517 9 1 5.1114 3.5050 -0.0178 10 1 3.6939 5.3871 -0.5910 11 1 2.9095 3.7117 0.9769 12 16 2.2929 -1.4343 0.0006 13 8 3.4943 -1.2043 -0.7226 14 8 1.3533 -2.4400 -0.3527 15 7 2.7404 -1.7412 1.5651 16 6 4.0093 -1.2203 2.0797 17 6 1.8703 -2.5388 2.4329 18 6 1.3264 -1.6572 3.5589 19 6 0.3872 -0.5318 3.1207 20 8 1.1130 0.4154 2.3346 21 6 2.2467 -1.3855 4.7506 22 6 1.0482 -2.3248 4.9071 23 1 -0.3633 0.0701 1.0253 24 1 -0.3633 0.8529 -0.5733 25 1 -0.3634 -0.9228 -0.4520 26 1 1.6569 2.0004 0.6002 27 1 3.1906 1.1148 0.4222 28 1 3.5543 4.2380 -3.0744 29 1 4.8009 -1.9475 1.8983 30 1 4.2510 -0.2862 1.5726 31 1 3.9203 -1.0397 3.1509 32 1 1.0400 -2.9357 1.8488 33 1 2.4408 -3.3634 2.8604 34 1 -0.4270 -0.9482 2.5275 35 1 -0.0215 -0.0360 4.0012 36 1 0.6033 1.2021 2.0969 37 1 3.2395 -1.8352 4.7326 38 1 2.1827 -0.4052 5.2227 39 1 0.1963 -1.9620 5.4821 40 1 1.2523 -3.3923 4.9918 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331782726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:51 Heat of formation + Delta-G solvation = -93.049439 kcal Electronic energy + Delta-G solvation = -24198.122484 eV Core-core repulsion = 20755.116543 eV Total energy + Delta-G solvation = -3443.005941 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.88908 -38.26796 -37.57832 -36.82584 -36.30661 -35.74741 -34.38316 -30.18584 -29.32258 -27.33832 -26.67363 -25.56197 -23.66930 -23.19397 -20.32474 -19.69481 -19.15088 -18.51326 -18.23884 -17.89238 -17.37014 -16.56533 -16.44660 -15.88269 -15.48902 -15.15395 -15.00851 -14.44215 -14.34321 -14.18238 -14.00597 -13.57506 -13.51299 -13.36514 -13.28415 -12.96363 -12.91792 -12.66590 -12.54207 -12.28610 -12.21574 -12.08295 -12.00267 -11.82101 -11.62844 -11.13599 -10.89434 -10.72112 -10.48174 -9.80539 -9.42832 -8.23132 -6.27347 -0.20754 1.39942 1.44105 1.53025 2.11572 2.40083 2.65098 2.90131 3.11702 3.49258 3.60613 3.74748 3.90756 4.01356 4.20200 4.32328 4.43228 4.57664 4.63820 4.71476 4.74628 4.80332 4.86596 4.89533 4.96680 5.01190 5.09195 5.12958 5.15913 5.16556 5.27398 5.36342 5.51248 5.61418 5.71874 6.03269 6.42256 6.76830 7.05969 7.35407 8.95050 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.007009 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.337908 B = 3993.712279 C = 4416.160062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.971 5.971 3 C 0.261 3.739 4 C -0.539 4.539 5 H 0.021 0.979 6 C 0.003 3.997 7 N -0.955 5.955 8 Si 0.946 3.054 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.220 1.220 12 S 2.793 3.207 13 O -1.021 7.021 14 O -1.017 7.017 15 N -0.986 5.986 16 C 0.097 3.903 17 C 0.155 3.845 18 C -0.160 4.160 19 C 0.103 3.897 20 O -0.566 6.566 21 C -0.162 4.162 22 C -0.141 4.141 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.021 0.979 28 H 0.265 0.735 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.383 0.617 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.760 -9.081 21.937 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.812 5.812 3 C 0.136 3.864 4 C -0.579 4.579 5 H 0.039 0.961 6 C -0.194 4.194 7 N -0.596 5.596 8 Si 0.768 3.232 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.142 1.142 12 S 2.803 3.197 13 O -1.005 7.005 14 O -1.002 7.002 15 N -0.826 5.826 16 C -0.049 4.049 17 C 0.030 3.970 18 C -0.162 4.162 19 C 0.025 3.975 20 O -0.374 6.374 21 C -0.199 4.199 22 C -0.179 4.179 23 H 0.104 0.896 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.233 0.767 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.127 0.873 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.054 -9.940 21.143 23.903 hybrid contribution 0.023 1.289 -0.348 1.335 sum -5.031 -8.651 20.795 23.078 Atomic orbital electron populations 1.21696 0.78631 1.02353 1.02810 1.56922 1.14868 1.20769 1.88607 1.18899 0.91313 0.82509 0.93675 1.21911 1.35547 1.06204 0.94216 0.96051 1.25964 0.96052 0.98746 0.98656 1.70099 1.44746 1.22685 1.22056 0.85752 0.79654 0.77185 0.80581 1.20111 1.21036 1.14216 1.01284 0.72066 0.72691 0.73674 1.93555 1.49286 1.86320 1.71321 1.93453 1.64428 1.58837 1.83444 1.57435 1.29074 1.65800 1.30259 1.21532 0.83372 0.97978 1.01974 1.20911 0.93240 0.91947 0.90928 1.21840 1.03745 1.00209 0.90415 1.21687 0.92405 0.89015 0.94391 1.86798 1.43836 1.33896 1.72872 1.23008 0.95601 1.01241 1.00069 1.23097 1.00105 0.99462 0.95253 0.89608 0.91872 0.92399 0.92238 0.96116 0.92638 0.92710 0.93334 0.88219 0.89805 0.89233 0.93215 0.92209 0.76659 0.88308 0.88648 0.87300 0.87214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.85 9.69 127.77 1.24 4.09 16 2 N -0.97 -38.07 1.61 -543.24 -0.88 -38.94 16 3 C 0.26 11.63 2.94 85.63 0.25 11.89 16 4 C -0.54 -31.46 9.93 25.60 0.25 -31.20 16 5 H 0.02 1.42 8.06 -2.91 -0.02 1.40 16 6 C 0.00 0.15 5.47 84.65 0.46 0.61 16 7 N -0.95 -61.39 13.96 21.45 0.30 -61.09 16 8 Si 0.95 42.81 27.47 68.60 1.88 44.70 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.22 -8.35 6.54 99.48 0.65 -7.70 16 12 S 2.79 113.90 5.91 -56.49 -0.33 113.56 16 13 O -1.02 -52.23 16.55 -128.00 -2.12 -54.35 16 14 O -1.02 -42.98 15.05 -128.00 -1.93 -44.91 16 15 N -0.99 -29.25 2.38 -539.11 -1.28 -30.54 16 16 C 0.10 2.62 10.18 127.77 1.30 3.92 16 17 C 0.15 3.46 5.71 86.38 0.49 3.96 16 18 C -0.16 -2.78 1.88 -52.18 -0.10 -2.88 16 19 C 0.10 1.80 6.26 71.98 0.45 2.25 16 20 O -0.57 -12.95 7.44 -148.98 -1.11 -14.06 16 21 C -0.16 -2.33 8.46 30.62 0.26 -2.07 16 22 C -0.14 -1.62 9.91 30.62 0.30 -1.32 16 23 H 0.09 1.95 3.71 -2.39 -0.01 1.94 16 24 H 0.06 2.10 8.10 -2.39 -0.02 2.08 16 25 H 0.06 1.88 6.90 -2.39 -0.02 1.86 16 26 H 0.06 2.30 5.88 -2.39 -0.01 2.29 16 27 H 0.02 0.95 6.11 -2.39 -0.01 0.94 16 28 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.55 6.71 -2.39 -0.02 1.54 16 31 H 0.10 2.08 5.06 -2.39 -0.01 2.06 16 32 H 0.08 2.05 6.79 -2.39 -0.02 2.04 16 33 H 0.09 1.62 8.09 -2.39 -0.02 1.60 16 34 H 0.05 0.86 6.85 -2.38 -0.02 0.84 16 35 H 0.06 0.82 8.09 -2.39 -0.02 0.80 16 36 H 0.38 7.50 6.67 -74.05 -0.49 7.01 16 37 H 0.10 1.36 7.09 -2.38 -0.02 1.34 16 38 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -80.26 316.52 -0.04 -80.30 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.51 Total: 16.07 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 4.92 Total: -10.75 kcal Atomic # 7 Polarization: -128.71 SS G_CDS: -1.86 Total: -130.57 kcal Atomic # 8 Polarization: -108.16 SS G_CDS: -5.15 Total: -113.31 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.70 kcal Atomic # 16 Polarization: 113.90 SS G_CDS: -0.33 Total: 113.56 kcal Total: -80.26 -0.04 -80.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331782726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.751 kcal (2) G-P(sol) polarization free energy of solvation -80.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds