Wall clock time and date at job start Tue Mar 31 2020 02:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40089 * 126.03795 * 2 1 4 4 C 1.30831 * 108.20678 * 180.23464 * 3 2 1 5 5 C 1.39868 * 108.20250 * 359.78084 * 4 3 2 6 6 C 1.34947 * 126.03958 * 179.84958 * 2 1 3 7 7 C 1.50703 * 126.12287 * 0.03321 * 6 2 1 8 8 H 1.08999 * 110.28583 * 334.86503 * 7 6 2 9 9 C 1.54477 * 110.24424 * 96.84614 * 7 6 2 10 10 H 1.09002 * 110.99900 * 211.71539 * 9 7 6 11 11 C 1.50697 * 110.97186 * 335.46239 * 9 7 6 12 12 O 1.21301 * 119.99943 * 320.42252 * 11 9 7 13 13 N 1.34775 * 120.00365 * 140.42005 * 11 9 7 14 14 C 1.37099 * 120.00148 * 180.02562 * 13 11 9 15 15 H 1.07997 * 120.00308 * 0.02562 * 14 13 11 16 16 C 1.38953 * 119.99781 * 179.97438 * 14 13 11 17 17 N 1.31412 * 119.99822 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99746 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47175 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.46869 * 299.99962 * 18 16 14 21 21 H 1.48492 * 109.47614 * 59.99952 * 18 16 14 22 22 C 1.54631 * 101.76695 * 93.58292 * 9 7 6 23 23 C 1.51275 * 104.19276 * 24.79586 * 22 9 7 24 24 O 1.21284 * 124.94209 * 163.78679 * 23 22 9 25 25 N 1.34419 * 110.12174 * 343.74623 * 23 22 9 26 26 C 1.46498 * 124.35512 * 179.56953 * 25 23 22 27 27 H 1.09003 * 109.46656 * 270.15783 * 1 2 3 28 28 H 1.08999 * 109.47166 * 30.14900 * 1 2 3 29 29 H 1.08992 * 109.47145 * 150.15054 * 1 2 3 30 30 H 1.07996 * 125.90215 * 179.81508 * 4 3 2 31 31 H 1.07996 * 126.04338 * 180.02562 * 5 4 3 32 32 H 0.97002 * 119.99637 * 0.02562 * 13 11 9 33 33 H 0.96996 * 120.00121 * 0.02562 * 17 16 14 34 34 H 1.09002 * 110.48676 * 143.47398 * 22 9 7 35 35 H 1.08999 * 110.48190 * 266.11697 * 22 9 7 36 36 H 1.09009 * 109.46822 * 359.97438 * 26 25 23 37 37 H 1.09001 * 109.46894 * 119.97484 * 26 25 23 38 38 H 1.08996 * 109.47105 * 239.98037 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5346 0.7322 -0.0051 5 6 3.5437 -0.6665 -0.0034 6 6 2.2590 -1.0912 0.0029 7 6 1.7973 -2.5258 0.0059 8 1 0.8003 -2.6010 0.4399 9 6 1.7987 -3.0908 -1.4318 10 1 1.0106 -3.8327 -1.5607 11 6 1.6653 -1.9845 -2.4462 12 8 0.9171 -1.0537 -2.2337 13 7 2.3773 -2.0291 -3.5897 14 6 2.2563 -1.0222 -4.5124 15 1 1.5907 -0.1931 -4.3228 16 6 2.9908 -1.0680 -5.6910 17 7 3.8010 -2.0767 -5.9215 18 14 2.8264 0.3041 -6.9478 19 1 3.7080 0.0204 -8.1086 20 1 1.4165 0.3887 -7.4066 21 1 3.2233 1.5936 -6.3277 22 6 3.1960 -3.7485 -1.5108 23 6 3.5436 -4.0551 -0.0708 24 8 4.4186 -4.8154 0.2859 25 7 2.7421 -3.3616 0.7561 26 6 2.8034 -3.4316 2.2181 27 1 -0.3633 0.0028 1.0277 28 1 -0.3633 0.8886 -0.5161 29 1 -0.3633 -0.8913 -0.5115 30 1 4.4054 1.3710 -0.0093 31 1 4.4210 -1.2962 -0.0062 32 1 2.9754 -2.7736 -3.7598 33 1 3.8861 -2.7893 -5.2690 34 1 3.1529 -4.6666 -2.0967 35 1 3.9201 -3.0553 -1.9388 36 1 3.5899 -4.1251 2.5160 37 1 3.0200 -2.4420 2.6204 38 1 1.8460 -3.7799 2.6056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332400413.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:20 Heat of formation + Delta-G solvation = 6.342123 kcal Electronic energy + Delta-G solvation = -24771.908171 eV Core-core repulsion = 21230.060971 eV Total energy + Delta-G solvation = -3541.847200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.79015 -41.24034 -39.97358 -37.63639 -36.34740 -34.19464 -34.08807 -32.79802 -31.46602 -28.54945 -27.98685 -27.44969 -26.45830 -24.34364 -22.11736 -21.70463 -21.11374 -20.37433 -19.72364 -18.69511 -18.12201 -17.27772 -16.77098 -16.65264 -16.39157 -16.27253 -15.59104 -15.52266 -15.38494 -14.82012 -14.67544 -14.42694 -14.37121 -13.86320 -13.52000 -13.40183 -13.25560 -13.21693 -13.08363 -12.82911 -12.67200 -12.46881 -11.95420 -11.86194 -11.66265 -11.46699 -11.16394 -10.30829 -10.19104 -10.01028 -9.96255 -9.39913 -8.88181 -6.01731 0.92404 1.32171 1.50387 1.53329 1.60743 1.79635 1.85604 1.94490 2.09239 2.40995 2.83085 3.14996 3.19313 3.29505 3.47497 3.73836 3.81971 3.90489 4.14932 4.31227 4.34227 4.40105 4.48773 4.60307 4.61695 4.66725 4.73982 4.84342 4.85087 4.86993 5.05334 5.40019 5.64757 5.75039 5.84615 5.98727 6.20468 6.57141 6.76526 6.81186 6.95853 7.47014 7.92330 8.58925 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.015988 B = 0.006593 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.918786 B = 4245.863820 C = 5180.550423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.333 5.333 3 N -0.329 5.329 4 C 0.029 3.971 5 C -0.285 4.285 6 C 0.089 3.911 7 C 0.224 3.776 8 H 0.135 0.865 9 C -0.096 4.096 10 H 0.154 0.846 11 C 0.461 3.539 12 O -0.597 6.597 13 N -0.577 5.577 14 C -0.396 4.396 15 H 0.072 0.928 16 C -0.041 4.041 17 N -0.918 5.918 18 Si 1.127 2.873 19 H -0.275 1.275 20 H -0.271 1.271 21 H -0.280 1.280 22 C -0.155 4.155 23 C 0.530 3.470 24 O -0.562 6.562 25 N -0.599 5.599 26 C 0.090 3.910 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.195 0.805 31 H 0.131 0.869 32 H 0.383 0.617 33 H 0.259 0.741 34 H 0.130 0.870 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.573 -3.180 13.686 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.114 5.114 3 N -0.152 5.152 4 C -0.154 4.154 5 C -0.315 4.315 6 C -0.042 4.042 7 C 0.117 3.883 8 H 0.153 0.847 9 C -0.118 4.118 10 H 0.171 0.829 11 C 0.248 3.752 12 O -0.483 6.483 13 N -0.215 5.215 14 C -0.525 4.525 15 H 0.090 0.910 16 C -0.240 4.240 17 N -0.557 5.557 18 Si 0.948 3.052 19 H -0.200 1.200 20 H -0.196 1.196 21 H -0.206 1.206 22 C -0.195 4.195 23 C 0.319 3.681 24 O -0.441 6.441 25 N -0.332 5.332 26 C -0.050 4.050 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.212 0.788 31 H 0.149 0.851 32 H 0.217 0.783 33 H 0.070 0.930 34 H 0.148 0.852 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.033 -1.400 12.636 14.072 hybrid contribution 0.665 -1.294 1.092 1.819 sum -5.368 -2.693 13.728 14.985 Atomic orbital electron populations 1.21965 0.73060 1.05340 1.02860 1.48323 1.07276 1.02239 1.53559 1.77191 1.02445 1.09623 1.25959 1.24023 0.95603 0.95477 1.00341 1.21071 0.96386 0.95031 1.19052 1.21082 0.91234 0.90773 1.01148 1.19759 0.94359 0.82862 0.91284 0.84738 1.22242 0.99830 0.97372 0.92334 0.82885 1.19915 0.83646 0.88406 0.83205 1.90516 1.42094 1.37430 1.78216 1.41969 1.39869 1.22386 1.17313 1.20372 1.27919 1.03586 1.00654 0.90962 1.27578 0.92956 1.03622 0.99826 1.70973 1.36585 1.10403 1.37754 0.82693 0.77246 0.71739 0.73547 1.19990 1.19614 1.20612 1.22509 0.97010 1.04318 0.95690 1.20755 0.79902 0.78628 0.88840 1.90703 1.33102 1.38497 1.81768 1.48065 1.35511 1.42065 1.07525 1.21807 1.04381 1.02964 0.75894 0.88805 0.91110 0.88170 0.78773 0.85090 0.78268 0.92957 0.85157 0.88906 0.90065 0.91654 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.94 9.83 127.77 1.26 4.19 16 2 N -0.33 -11.42 3.14 -356.03 -1.12 -12.54 16 3 N -0.33 -12.66 12.58 -57.03 -0.72 -13.38 16 4 C 0.03 1.04 12.03 85.24 1.02 2.06 16 5 C -0.29 -9.91 10.30 21.99 0.23 -9.68 16 6 C 0.09 2.86 4.11 41.41 0.17 3.03 16 7 C 0.22 5.60 2.94 44.70 0.13 5.74 16 8 H 0.14 2.51 7.56 -2.39 -0.02 2.50 16 9 C -0.10 -2.65 3.57 -10.48 -0.04 -2.69 16 10 H 0.15 3.21 8.14 -2.39 -0.02 3.19 16 11 C 0.46 18.54 6.25 87.66 0.55 19.09 16 12 O -0.60 -26.77 11.13 -3.10 -0.03 -26.81 16 13 N -0.58 -26.74 4.95 -306.98 -1.52 -28.26 16 14 C -0.40 -21.38 9.68 84.04 0.81 -20.57 16 15 H 0.07 4.23 7.16 -2.91 -0.02 4.21 16 16 C -0.04 -2.18 5.50 84.93 0.47 -1.71 16 17 N -0.92 -50.22 13.68 21.66 0.30 -49.92 16 18 Si 1.13 48.28 29.92 68.60 2.05 50.34 16 19 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 22 C -0.16 -4.35 5.48 30.59 0.17 -4.18 16 23 C 0.53 15.30 7.99 87.90 0.70 16.00 16 24 O -0.56 -19.73 17.35 -3.04 -0.05 -19.78 16 25 N -0.60 -14.20 2.63 -823.07 -2.17 -16.37 16 26 C 0.09 1.61 11.14 127.77 1.42 3.03 16 27 H 0.09 1.80 8.14 -2.39 -0.02 1.79 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.10 2.65 6.07 -2.39 -0.01 2.64 16 30 H 0.20 5.69 8.06 -2.91 -0.02 5.67 16 31 H 0.13 4.46 8.04 -2.91 -0.02 4.44 16 32 H 0.38 16.69 5.24 -92.71 -0.49 16.21 16 33 H 0.26 13.68 6.77 -92.71 -0.63 13.05 16 34 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.09 3.07 7.15 -2.39 -0.02 3.05 16 36 H 0.08 1.56 7.53 -2.38 -0.02 1.54 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -73.20 317.94 4.39 -68.82 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.76 Total: 33.60 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 6.89 Total: 14.30 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -5.22 Total: -120.47 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -0.09 Total: -46.58 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.05 Total: 50.34 kcal Total: -73.20 4.39 -68.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332400413.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.157 kcal (2) G-P(sol) polarization free energy of solvation -73.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds