Wall clock time and date at job start Tue Mar 31 2020 02:48:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46496 * 109.46995 * 2 1
4 4 C 1.46499 * 119.99965 * 274.99939 * 3 2 1
5 5 C 1.50700 * 109.47156 * 85.00236 * 4 3 2
6 6 H 1.08003 * 119.99987 * 0.02562 * 5 4 3
7 7 C 1.37874 * 120.00102 * 180.02562 * 5 4 3
8 8 N 1.31508 * 120.00179 * 359.97438 * 7 5 4
9 9 Si 1.86809 * 119.99825 * 180.02562 * 7 5 4
10 10 H 1.48500 * 109.46922 * 59.99898 * 9 7 5
11 11 H 1.48504 * 109.46759 * 179.97438 * 9 7 5
12 12 H 1.48501 * 109.46964 * 299.99832 * 9 7 5
13 13 S 1.65602 * 119.99946 * 95.00592 * 3 2 1
14 14 O 1.42103 * 106.39821 * 203.53978 * 13 3 2
15 15 O 1.42101 * 106.40141 * 336.45256 * 13 3 2
16 16 N 1.65592 * 107.22052 * 89.99757 * 13 3 2
17 17 C 1.43422 * 120.63426 * 269.72186 * 16 13 3
18 18 C 1.54789 * 116.57903 * 269.49361 * 17 16 13
19 19 C 1.55191 * 108.79813 * 319.49192 * 18 17 16
20 20 O 1.39647 * 110.57152 * 322.07414 * 19 18 17
21 21 C 1.42380 * 108.63672 * 101.16801 * 20 19 18
22 22 C 1.46913 * 113.79110 * 267.45744 * 21 20 19
23 23 H 1.09001 * 109.47002 * 299.99701 * 1 2 3
24 24 H 1.08993 * 109.46955 * 60.00138 * 1 2 3
25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3
26 26 H 1.09001 * 109.46801 * 120.00145 * 2 1 3
27 27 H 1.09001 * 109.46998 * 239.99741 * 2 1 3
28 28 H 1.09008 * 109.47178 * 205.00059 * 4 3 2
29 29 H 1.09001 * 109.47474 * 325.00537 * 4 3 2
30 30 H 0.97003 * 120.00039 * 179.97438 * 8 7 5
31 31 H 1.09007 * 108.12808 * 31.11562 * 17 16 13
32 32 H 1.09002 * 108.12649 * 147.59473 * 17 16 13
33 33 H 1.09003 * 109.66685 * 199.66862 * 18 17 16
34 34 H 1.08994 * 109.65468 * 79.30931 * 18 17 16
35 35 H 1.09007 * 109.25907 * 201.79547 * 19 18 17
36 36 H 1.09000 * 109.26120 * 82.35175 * 19 18 17
37 37 H 1.09002 * 108.61503 * 146.34345 * 21 20 19
38 38 H 1.08995 * 108.61555 * 28.57453 * 21 20 19
39 39 H 1.09003 * 109.99075 * 297.49067 * 22 21 20
40 40 H 1.08995 * 110.07248 * 176.16359 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1583 2.1086 -1.2639
5 6 0.8360 2.7288 -1.6356
6 1 -0.0226 2.5948 -0.9942
7 6 0.7224 3.4672 -2.7944
8 7 1.7679 3.6308 -3.5751
9 14 -0.9165 4.2365 -3.2547
10 1 -1.3389 5.1777 -2.1866
11 1 -0.7747 4.9738 -4.5359
12 1 -1.9385 3.1699 -3.4072
13 16 2.4123 2.1201 1.4287
14 8 2.3058 3.5185 1.1998
15 8 1.6869 1.4415 2.4448
16 7 4.0145 1.8136 1.7137
17 6 4.4158 0.6560 2.4592
18 6 4.5526 0.8318 3.9909
19 6 5.2121 2.2067 4.2795
20 8 6.1997 2.4856 3.3325
21 6 5.6689 3.3975 2.3766
22 6 5.0744 2.7454 1.2019
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8899
25 1 -0.3633 -1.0277 -0.0005
26 1 1.8933 -0.5139 0.8900
27 1 1.8934 -0.5139 -0.8900
28 1 2.9080 2.8918 -1.1513
29 1 2.4689 1.4182 -2.0481
30 1 1.6878 4.1500 -4.3906
31 1 3.6869 -0.1339 2.2774
32 1 5.3768 0.3187 2.0707
33 1 5.1760 0.0354 4.3974
34 1 3.5664 0.7957 4.4536
35 1 5.6612 2.1886 5.2726
36 1 4.4502 2.9854 4.2443
37 1 6.4704 4.0555 2.0409
38 1 4.9046 4.0045 2.8618
39 1 5.8364 2.1828 0.6626
40 1 4.6284 3.4923 0.5452
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000336891151.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:01
Heat of formation + Delta-G solvation = -110.326618 kcal
Electronic energy + Delta-G solvation = -23667.181151 eV
Core-core repulsion = 20223.426015 eV
Total energy + Delta-G solvation = -3443.755136 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 292.129 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-39.67463 -36.73914 -36.05457 -35.47386 -35.15688 -32.71705 -32.60749 -29.82977
-28.53198 -26.74153 -25.98331 -22.82552 -22.41159 -21.88268 -21.32415 -18.51505
-17.37228 -17.00285 -16.63119 -16.36965 -15.92972 -15.66416 -15.11232 -14.68581
-14.37163 -13.84622 -13.52636 -13.17836 -13.08548 -12.98723 -12.57722 -12.25793
-12.16080 -12.05463 -11.77842 -11.49728 -11.40238 -11.28248 -11.18782 -11.00274
-10.98779 -10.80725 -10.53379 -10.45679 -10.34793 -9.92471 -9.67975 -9.63779
-8.92951 -8.44202 -8.08987 -6.07242 -4.10393 1.14632 3.32572 3.36294
3.39556 3.42090 3.93691 4.04418 4.43676 4.68168 4.88333 4.94378
5.00703 5.11297 5.23553 5.28864 5.35749 5.42553 5.45368 5.56904
5.74211 5.77345 5.84151 5.87941 5.88925 5.95270 6.06446 6.14622
6.27841 6.39993 6.66274 6.80288 6.97379 7.12481 7.21219 7.40168
7.61744 7.90561 8.20194 8.91340 9.54377 11.01411
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.023913 B = 0.005748 C = 0.005145
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1170.650811 B = 4870.084318 C = 5440.997917
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.136 3.864
3 N -0.992 5.992
4 C 0.259 3.741
5 C -0.526 4.526
6 H 0.062 0.938
7 C 0.062 3.938
8 N -0.897 5.897
9 Si 0.894 3.106
10 H -0.275 1.275
11 H -0.286 1.286
12 H -0.276 1.276
13 S 2.775 3.225
14 O -0.964 6.964
15 O -0.992 6.992
16 N -1.010 6.010
17 C 0.133 3.867
18 C -0.169 4.169
19 C 0.053 3.947
20 O -0.355 6.355
21 C 0.035 3.965
22 C 0.096 3.904
23 H 0.052 0.948
24 H 0.078 0.922
25 H 0.050 0.950
26 H 0.058 0.942
27 H 0.071 0.929
28 H 0.035 0.965
29 H 0.034 0.966
30 H 0.264 0.736
31 H 0.065 0.935
32 H 0.072 0.928
33 H 0.078 0.922
34 H 0.078 0.922
35 H 0.075 0.925
36 H 0.054 0.946
37 H 0.091 0.909
38 H 0.061 0.939
39 H 0.083 0.917
40 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.730 -5.944 11.004 14.703
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.009 3.991
3 N -0.834 5.834
4 C 0.137 3.863
5 C -0.565 4.565
6 H 0.080 0.920
7 C -0.140 4.140
8 N -0.536 5.536
9 Si 0.722 3.278
10 H -0.200 1.200
11 H -0.212 1.212
12 H -0.202 1.202
13 S 2.785 3.215
14 O -0.947 6.947
15 O -0.976 6.976
16 N -0.848 5.848
17 C 0.005 3.995
18 C -0.209 4.209
19 C -0.025 4.025
20 O -0.272 6.272
21 C -0.043 4.043
22 C -0.028 4.028
23 H 0.071 0.929
24 H 0.097 0.903
25 H 0.069 0.931
26 H 0.077 0.923
27 H 0.089 0.911
28 H 0.053 0.947
29 H 0.052 0.948
30 H 0.073 0.927
31 H 0.083 0.917
32 H 0.090 0.910
33 H 0.097 0.903
34 H 0.096 0.904
35 H 0.093 0.907
36 H 0.072 0.928
37 H 0.109 0.891
38 H 0.079 0.921
39 H 0.101 0.899
40 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 7.423 -5.430 11.354 14.612
hybrid contribution -0.912 0.269 -0.620 1.135
sum 6.511 -5.161 10.734 13.574
Atomic orbital electron populations
1.22259 0.96338 1.00861 1.03661 1.20959 0.94857 0.82292 1.00968
1.57822 1.78212 1.23007 1.24393 1.19036 0.97444 0.90840 0.78999
1.21481 0.96328 1.31932 1.06767 0.92017 1.24919 0.96836 0.95996
0.96213 1.69901 1.29311 1.40697 1.13662 0.86618 0.83907 0.79576
0.77725 1.20042 1.21185 1.20167 1.02223 0.72512 0.73735 0.73071
1.93613 1.85166 1.30279 1.85681 1.93529 1.70029 1.76362 1.57631
1.58473 1.25333 1.35119 1.65836 1.20438 1.01499 0.86549 0.90997
1.23354 1.01701 0.98579 0.97233 1.22611 0.90950 0.96568 0.92406
1.87652 1.35585 1.65185 1.38803 1.21933 0.99254 0.91568 0.91552
1.21585 0.90904 0.93502 0.96819 0.92865 0.90264 0.93058 0.92344
0.91099 0.94731 0.94769 0.92670 0.91709 0.90996 0.90294 0.90353
0.90694 0.92768 0.89123 0.92068 0.89876 0.87271
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.06 9.83 37.16 0.37 -2.69 16
2 C 0.14 2.37 6.09 -4.04 -0.02 2.34 16
3 N -0.99 -20.36 2.86 -115.66 -0.33 -20.69 16
4 C 0.26 6.31 5.12 -5.19 -0.03 6.29 16
5 C -0.53 -14.39 8.41 -34.44 -0.29 -14.68 16
6 H 0.06 1.69 6.89 -52.48 -0.36 1.33 16
7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
8 N -0.90 -25.67 13.29 55.43 0.74 -24.94 16
9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16
10 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16
11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
13 S 2.78 55.03 5.96 -107.50 -0.64 54.39 16
14 O -0.96 -22.55 15.90 -57.17 -0.91 -23.46 16
15 O -0.99 -20.33 16.19 -57.17 -0.93 -21.26 16
16 N -1.01 -15.66 2.97 -115.89 -0.34 -16.00 16
17 C 0.13 1.75 4.88 -4.73 -0.02 1.73 16
18 C -0.17 -1.98 6.74 -24.63 -0.17 -2.14 16
19 C 0.05 0.62 6.38 38.32 0.24 0.86 16
20 O -0.35 -4.52 10.24 -31.96 -0.33 -4.85 16
21 C 0.03 0.43 6.01 34.24 0.21 0.64 16
22 C 0.10 1.33 6.27 -4.93 -0.03 1.30 16
23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
24 H 0.08 1.58 6.59 -51.93 -0.34 1.23 16
25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
26 H 0.06 0.88 7.23 -51.93 -0.38 0.51 16
27 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16
28 H 0.03 0.89 7.61 -51.92 -0.40 0.49 16
29 H 0.03 0.85 8.00 -51.93 -0.42 0.44 16
30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16
31 H 0.06 0.83 7.34 -51.93 -0.38 0.45 16
32 H 0.07 0.85 7.99 -51.93 -0.41 0.44 16
33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16
34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
36 H 0.05 0.68 6.66 -51.93 -0.35 0.33 16
37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16
38 H 0.06 0.79 6.77 -51.93 -0.35 0.44 16
39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
40 H 0.11 1.66 7.27 -51.93 -0.38 1.28 16
LS Contribution 329.11 15.07 4.96 4.96
Total: -1.00 -32.18 329.11 -8.91 -41.09
By element:
Atomic # 1 Polarization: 5.17 SS G_CDS: -6.27 Total: -1.10 kcal
Atomic # 6 Polarization: -4.87 SS G_CDS: 0.16 Total: -4.71 kcal
Atomic # 7 Polarization: -61.70 SS G_CDS: 0.06 Total: -61.63 kcal
Atomic # 8 Polarization: -47.40 SS G_CDS: -2.16 Total: -49.56 kcal
Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal
Atomic # 16 Polarization: 55.03 SS G_CDS: -0.64 Total: 54.39 kcal
Total LS contribution 4.96 Total: 4.96 kcal
Total: -32.18 -8.91 -41.09 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000336891151.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.236 kcal
(2) G-P(sol) polarization free energy of solvation -32.176 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.412 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.327 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds