Wall clock time and date at job start Tue Mar 31 2020 02:48:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46496 * 109.46995 * 2 1
4 4 C 1.46499 * 119.99965 * 274.99939 * 3 2 1
5 5 C 1.50700 * 109.47156 * 85.00236 * 4 3 2
6 6 H 1.08003 * 119.99987 * 0.02562 * 5 4 3
7 7 C 1.37874 * 120.00102 * 180.02562 * 5 4 3
8 8 N 1.31508 * 120.00179 * 359.97438 * 7 5 4
9 9 Si 1.86809 * 119.99825 * 180.02562 * 7 5 4
10 10 H 1.48500 * 109.46922 * 59.99898 * 9 7 5
11 11 H 1.48504 * 109.46759 * 179.97438 * 9 7 5
12 12 H 1.48501 * 109.46964 * 299.99832 * 9 7 5
13 13 S 1.65602 * 119.99946 * 95.00592 * 3 2 1
14 14 O 1.42103 * 106.39821 * 203.53978 * 13 3 2
15 15 O 1.42101 * 106.40141 * 336.45256 * 13 3 2
16 16 N 1.65592 * 107.22052 * 89.99757 * 13 3 2
17 17 C 1.43422 * 120.63426 * 269.72186 * 16 13 3
18 18 C 1.54789 * 116.57903 * 269.49361 * 17 16 13
19 19 C 1.55191 * 108.79813 * 319.49192 * 18 17 16
20 20 O 1.39647 * 110.57152 * 322.07414 * 19 18 17
21 21 C 1.42380 * 108.63672 * 101.16801 * 20 19 18
22 22 C 1.46913 * 113.79110 * 267.45744 * 21 20 19
23 23 H 1.09001 * 109.47002 * 299.99701 * 1 2 3
24 24 H 1.08993 * 109.46955 * 60.00138 * 1 2 3
25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3
26 26 H 1.09001 * 109.46801 * 120.00145 * 2 1 3
27 27 H 1.09001 * 109.46998 * 239.99741 * 2 1 3
28 28 H 1.09008 * 109.47178 * 205.00059 * 4 3 2
29 29 H 1.09001 * 109.47474 * 325.00537 * 4 3 2
30 30 H 0.97003 * 120.00039 * 179.97438 * 8 7 5
31 31 H 1.09007 * 108.12808 * 31.11562 * 17 16 13
32 32 H 1.09002 * 108.12649 * 147.59473 * 17 16 13
33 33 H 1.09003 * 109.66685 * 199.66862 * 18 17 16
34 34 H 1.08994 * 109.65468 * 79.30931 * 18 17 16
35 35 H 1.09007 * 109.25907 * 201.79547 * 19 18 17
36 36 H 1.09000 * 109.26120 * 82.35175 * 19 18 17
37 37 H 1.09002 * 108.61503 * 146.34345 * 21 20 19
38 38 H 1.08995 * 108.61555 * 28.57453 * 21 20 19
39 39 H 1.09003 * 109.99075 * 297.49067 * 22 21 20
40 40 H 1.08995 * 110.07248 * 176.16359 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1583 2.1086 -1.2639
5 6 0.8360 2.7288 -1.6356
6 1 -0.0226 2.5948 -0.9942
7 6 0.7224 3.4672 -2.7944
8 7 1.7679 3.6308 -3.5751
9 14 -0.9165 4.2365 -3.2547
10 1 -1.3389 5.1777 -2.1866
11 1 -0.7747 4.9738 -4.5359
12 1 -1.9385 3.1699 -3.4072
13 16 2.4123 2.1201 1.4287
14 8 2.3058 3.5185 1.1998
15 8 1.6869 1.4415 2.4448
16 7 4.0145 1.8136 1.7137
17 6 4.4158 0.6560 2.4592
18 6 4.5526 0.8318 3.9909
19 6 5.2121 2.2067 4.2795
20 8 6.1997 2.4856 3.3325
21 6 5.6689 3.3975 2.3766
22 6 5.0744 2.7454 1.2019
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8899
25 1 -0.3633 -1.0277 -0.0005
26 1 1.8933 -0.5139 0.8900
27 1 1.8934 -0.5139 -0.8900
28 1 2.9080 2.8918 -1.1513
29 1 2.4689 1.4182 -2.0481
30 1 1.6878 4.1500 -4.3906
31 1 3.6869 -0.1339 2.2774
32 1 5.3768 0.3187 2.0707
33 1 5.1760 0.0354 4.3974
34 1 3.5664 0.7957 4.4536
35 1 5.6612 2.1886 5.2726
36 1 4.4502 2.9854 4.2443
37 1 6.4704 4.0555 2.0409
38 1 4.9046 4.0045 2.8618
39 1 5.8364 2.1828 0.6626
40 1 4.6284 3.4923 0.5452
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000336891151.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:48:01
Heat of formation + Delta-G solvation = -133.708877 kcal
Electronic energy + Delta-G solvation = -23668.195082 eV
Core-core repulsion = 20223.426015 eV
Total energy + Delta-G solvation = -3444.769067 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 292.129 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-40.67851 -38.38026 -37.71326 -36.85706 -36.57640 -34.64723 -33.71462 -31.45400
-29.61567 -28.65253 -27.00619 -24.69494 -23.52455 -23.41933 -22.38747 -19.89072
-18.93062 -18.51944 -18.38345 -17.70378 -17.19486 -16.79560 -16.61965 -16.18020
-15.74346 -15.35283 -14.78807 -14.71823 -14.46398 -14.22227 -14.04430 -13.70401
-13.63503 -13.37419 -13.25181 -13.15894 -13.02857 -12.91782 -12.85600 -12.78178
-12.27491 -12.24476 -12.12691 -11.82524 -11.67012 -11.59781 -11.38089 -10.64604
-10.57007 -10.12662 -9.78942 -8.18407 -6.28080 -0.39258 1.38884 1.41821
1.48670 1.98363 2.39616 2.52956 2.99867 3.12781 3.31959 3.66730
3.89339 3.96570 4.05992 4.12427 4.28838 4.32356 4.42627 4.44850
4.51169 4.62138 4.69071 4.77233 4.83609 4.86262 4.94013 4.97518
5.07132 5.15560 5.20017 5.22249 5.45092 5.53683 5.67489 5.74232
5.99161 6.13954 6.16129 6.78942 7.39644 8.89100
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.023913 B = 0.005748 C = 0.005145
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1170.650811 B = 4870.084318 C = 5440.997917
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.126 3.874
3 N -0.998 5.998
4 C 0.274 3.726
5 C -0.540 4.540
6 H 0.053 0.947
7 C 0.014 3.986
8 N -0.923 5.923
9 Si 0.949 3.051
10 H -0.279 1.279
11 H -0.277 1.277
12 H -0.265 1.265
13 S 2.786 3.214
14 O -1.007 7.007
15 O -1.001 7.001
16 N -1.002 6.002
17 C 0.120 3.880
18 C -0.167 4.167
19 C 0.046 3.954
20 O -0.356 6.356
21 C 0.035 3.965
22 C 0.092 3.908
23 H 0.037 0.963
24 H 0.051 0.949
25 H 0.087 0.913
26 H 0.087 0.913
27 H 0.085 0.915
28 H 0.017 0.983
29 H 0.027 0.973
30 H 0.266 0.734
31 H 0.068 0.932
32 H 0.091 0.909
33 H 0.106 0.894
34 H 0.068 0.932
35 H 0.099 0.901
36 H 0.040 0.960
37 H 0.117 0.883
38 H 0.050 0.950
39 H 0.106 0.894
40 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.444 -7.172 11.764 16.159
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.000 4.000
3 N -0.839 5.839
4 C 0.151 3.849
5 C -0.580 4.580
6 H 0.071 0.929
7 C -0.185 4.185
8 N -0.563 5.563
9 Si 0.774 3.226
10 H -0.205 1.205
11 H -0.202 1.202
12 H -0.190 1.190
13 S 2.796 3.204
14 O -0.991 6.991
15 O -0.985 6.985
16 N -0.843 5.843
17 C -0.007 4.007
18 C -0.207 4.207
19 C -0.032 4.032
20 O -0.274 6.274
21 C -0.043 4.043
22 C -0.031 4.031
23 H 0.056 0.944
24 H 0.070 0.930
25 H 0.106 0.894
26 H 0.105 0.895
27 H 0.103 0.897
28 H 0.035 0.965
29 H 0.045 0.955
30 H 0.075 0.925
31 H 0.087 0.913
32 H 0.110 0.890
33 H 0.125 0.875
34 H 0.087 0.913
35 H 0.117 0.883
36 H 0.059 0.941
37 H 0.135 0.865
38 H 0.069 0.931
39 H 0.124 0.876
40 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 8.121 -6.682 12.125 16.051
hybrid contribution -1.072 0.592 -0.783 1.453
sum 7.050 -6.090 11.343 14.678
Atomic orbital electron populations
1.22234 0.96689 1.02574 1.01481 1.21258 0.94693 0.80978 1.03033
1.57746 1.79093 1.24036 1.23031 1.18606 0.95594 0.90368 0.80377
1.21800 0.97270 1.32154 1.06757 0.92886 1.25662 0.99969 0.96543
0.96334 1.69985 1.30894 1.41400 1.14060 0.85756 0.80461 0.78921
0.77480 1.20517 1.20189 1.18955 1.01668 0.73404 0.72653 0.72684
1.93551 1.86296 1.33080 1.86176 1.93503 1.71164 1.76222 1.57614
1.58126 1.23893 1.36251 1.66026 1.20756 1.02500 0.85469 0.91937
1.23378 1.01825 0.99485 0.95996 1.22749 0.90814 0.96198 0.93436
1.87646 1.35692 1.65189 1.38829 1.21936 0.99847 0.91571 0.90930
1.21765 0.90559 0.93250 0.97545 0.94372 0.92978 0.89450 0.89529
0.89684 0.96528 0.95468 0.92467 0.91325 0.89026 0.87533 0.91304
0.88292 0.94116 0.86547 0.93130 0.87630 0.89220
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -5.92 9.83 71.98 0.71 -5.22 16
2 C 0.13 4.23 6.09 86.38 0.53 4.75 16
3 N -1.00 -41.02 2.86 -519.83 -1.48 -42.50 16
4 C 0.27 13.64 5.12 85.63 0.44 14.08 16
5 C -0.54 -30.14 8.41 25.60 0.22 -29.92 16
6 H 0.05 2.98 6.89 -2.91 -0.02 2.96 16
7 C 0.01 0.80 5.46 84.65 0.46 1.27 16
8 N -0.92 -53.45 13.29 21.45 0.28 -53.17 16
9 Si 0.95 44.46 29.54 68.60 2.03 46.48 16
10 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16
11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16
12 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16
13 S 2.79 110.95 5.96 -56.49 -0.34 110.62 16
14 O -1.01 -48.58 15.90 -128.00 -2.04 -50.62 16
15 O -1.00 -40.66 16.19 -128.00 -2.07 -42.74 16
16 N -1.00 -30.13 2.97 -520.57 -1.54 -31.67 16
17 C 0.12 2.88 4.88 87.56 0.43 3.31 16
18 C -0.17 -3.50 6.74 31.96 0.22 -3.29 16
19 C 0.05 0.98 6.38 72.73 0.46 1.45 16
20 O -0.36 -8.22 10.24 -137.26 -1.41 -9.63 16
21 C 0.04 0.82 6.01 70.09 0.42 1.24 16
22 C 0.09 2.48 6.27 83.78 0.53 3.01 16
23 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16
24 H 0.05 2.07 6.59 -2.39 -0.02 2.06 16
25 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16
26 H 0.09 2.42 7.23 -2.39 -0.02 2.41 16
27 H 0.08 2.62 8.00 -2.39 -0.02 2.60 16
28 H 0.02 0.89 7.61 -2.38 -0.02 0.87 16
29 H 0.03 1.38 8.00 -2.39 -0.02 1.36 16
30 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16
31 H 0.07 1.59 7.34 -2.38 -0.02 1.58 16
32 H 0.09 1.88 7.99 -2.39 -0.02 1.86 16
33 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16
34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16
35 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16
36 H 0.04 0.98 6.66 -2.39 -0.02 0.97 16
37 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16
38 H 0.05 1.30 6.77 -2.39 -0.02 1.28 16
39 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16
40 H 0.09 2.79 7.27 -2.39 -0.02 2.77 16
Total: -1.00 -69.28 329.11 -1.14 -70.43
By element:
Atomic # 1 Polarization: 11.08 SS G_CDS: 1.02 Total: 12.10 kcal
Atomic # 6 Polarization: -13.71 SS G_CDS: 4.40 Total: -9.31 kcal
Atomic # 7 Polarization: -124.60 SS G_CDS: -2.74 Total: -127.34 kcal
Atomic # 8 Polarization: -97.47 SS G_CDS: -5.51 Total: -102.98 kcal
Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal
Atomic # 16 Polarization: 110.95 SS G_CDS: -0.34 Total: 110.62 kcal
Total: -69.28 -1.14 -70.43 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000336891151.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.279 kcal
(2) G-P(sol) polarization free energy of solvation -69.285 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.564 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.145 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.429 kcal
(6) G-S(sol) free energy of system = (1) + (5) -133.709 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds