Wall clock time and date at job start Tue Mar 31 2020 02:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46508 * 109.46917 * 2 1 4 4 C 1.46500 * 119.99949 * 274.53568 * 3 2 1 5 5 C 1.50711 * 109.46717 * 280.85337 * 4 3 2 6 6 H 1.07997 * 119.99781 * 358.43241 * 5 4 3 7 7 C 1.37871 * 119.99631 * 178.43044 * 5 4 3 8 8 N 1.31509 * 120.00507 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99579 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47254 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47044 * 120.00328 * 9 7 5 12 12 H 1.48495 * 109.47424 * 240.00039 * 9 7 5 13 13 S 1.65598 * 119.99932 * 94.52728 * 3 2 1 14 14 O 1.42097 * 106.40332 * 336.64905 * 13 3 2 15 15 O 1.42099 * 106.40100 * 203.72527 * 13 3 2 16 16 N 1.65606 * 107.21284 * 90.18806 * 13 3 2 17 17 C 1.46498 * 120.00134 * 65.73271 * 16 13 3 18 18 C 1.52994 * 109.47119 * 163.26138 * 17 16 13 19 19 H 1.08998 * 110.44017 * 303.90890 * 18 17 16 20 20 C 1.54815 * 110.48654 * 181.22114 * 18 17 16 21 21 C 1.55003 * 102.09317 * 220.44299 * 20 18 17 22 22 O 1.44385 * 103.48645 * 37.02246 * 21 20 18 23 23 C 1.43741 * 106.97682 * 319.94111 * 22 21 20 24 24 H 1.08999 * 109.47392 * 305.04569 * 1 2 3 25 25 H 1.09006 * 109.47428 * 65.04796 * 1 2 3 26 26 H 1.09006 * 109.46743 * 185.04514 * 1 2 3 27 27 H 1.08996 * 109.47090 * 240.00477 * 2 1 3 28 28 H 1.08993 * 109.47518 * 119.99710 * 2 1 3 29 29 H 1.08995 * 109.47593 * 40.84970 * 4 3 2 30 30 H 1.08992 * 109.47128 * 160.86072 * 4 3 2 31 31 H 0.97006 * 120.00481 * 179.97438 * 8 7 5 32 32 H 0.96995 * 119.99822 * 245.72814 * 16 13 3 33 33 H 1.08998 * 109.47309 * 283.26559 * 17 16 13 34 34 H 1.09004 * 109.47181 * 43.26206 * 17 16 13 35 35 H 1.08995 * 110.90961 * 338.64413 * 20 18 17 36 36 H 1.09005 * 110.90701 * 102.24949 * 20 18 17 37 37 H 1.09000 * 110.61579 * 278.52818 * 21 20 18 38 38 H 1.08992 * 110.75272 * 155.58636 * 21 20 18 39 39 H 1.09007 * 109.87573 * 267.08787 * 23 22 21 40 40 H 1.08994 * 109.88130 * 145.93933 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1678 2.1054 -1.2648 5 6 3.4435 1.6750 -1.9421 6 1 4.0918 0.9549 -1.4650 7 6 3.7828 2.2005 -3.1707 8 7 2.9936 3.0777 -3.7514 9 14 5.3644 1.6676 -4.0099 10 1 6.0696 0.6791 -3.1551 11 1 5.0445 1.0484 -5.3213 12 1 6.2359 2.8512 -4.2209 13 16 2.4010 2.1242 1.4297 14 8 1.6712 1.4454 2.4425 15 8 2.2920 3.5218 1.1973 16 7 4.0023 1.8228 1.7253 17 6 5.0279 2.3760 0.8375 18 6 6.3895 2.3181 1.5328 19 1 6.3508 2.8389 2.4895 20 6 7.4873 2.9259 0.6259 21 6 8.6718 1.9523 0.8529 22 8 8.0314 0.6630 0.9645 23 6 6.8315 0.8555 1.7323 24 1 -0.3634 0.5901 0.8413 25 1 -0.3634 0.4335 -0.9318 26 1 -0.3633 -1.0238 0.0904 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 1.3199 1.8839 -1.9128 30 1 2.2047 3.1767 -1.0679 31 1 3.2325 3.4478 -4.6157 32 1 4.2612 1.2800 2.4863 33 1 5.0648 1.7930 -0.0828 34 1 4.7841 3.4119 0.6017 35 1 7.1753 2.9221 -0.4184 36 1 7.7451 3.9343 0.9498 37 1 9.2005 2.1991 1.7736 38 1 9.3542 1.9696 0.0033 39 1 7.0329 0.6697 2.7874 40 1 6.0522 0.1811 1.3774 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336917884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:41 Heat of formation + Delta-G solvation = -156.446170 kcal Electronic energy + Delta-G solvation = -23284.586588 eV Core-core repulsion = 19838.831558 eV Total energy + Delta-G solvation = -3445.755030 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.44144 -38.31645 -37.67660 -36.88243 -36.52600 -34.65780 -32.80690 -31.51114 -30.05045 -28.49401 -26.32894 -24.93162 -23.38076 -23.26649 -21.55348 -20.30968 -18.73083 -18.58767 -18.30763 -17.61818 -17.21448 -16.90810 -16.55738 -16.04749 -15.78478 -15.40214 -14.89646 -14.74488 -14.56225 -13.86913 -13.75346 -13.70554 -13.56685 -13.47485 -13.32728 -13.15840 -13.03127 -12.75331 -12.65314 -12.42950 -12.27059 -12.12691 -12.07584 -11.94850 -11.70486 -11.62617 -11.53601 -10.58037 -10.56477 -10.37037 -9.76942 -8.14471 -6.26774 -0.26992 1.41927 1.46317 1.56613 2.01563 2.43807 2.62630 3.04535 3.17871 3.43645 3.56478 3.79773 3.96576 3.99874 4.21697 4.34221 4.39331 4.44402 4.49384 4.66768 4.72028 4.75763 4.81334 4.84281 4.90830 5.00774 5.08837 5.11436 5.18676 5.26919 5.31623 5.42870 5.57361 5.80371 5.89835 5.96575 6.13823 6.24019 6.85479 7.42904 8.93864 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.008708 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.153184 B = 3214.568523 C = 4907.103182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.259 3.741 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.016 3.984 8 N -0.927 5.927 9 Si 0.949 3.051 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.280 1.280 13 S 2.800 3.200 14 O -1.004 7.004 15 O -1.018 7.018 16 N -1.114 6.114 17 C 0.125 3.875 18 C -0.123 4.123 19 H 0.110 0.890 20 C -0.154 4.154 21 C 0.046 3.954 22 O -0.406 6.406 23 C 0.047 3.953 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.017 0.983 30 H 0.020 0.980 31 H 0.264 0.736 32 H 0.422 0.578 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.856 -4.584 10.583 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.135 3.865 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.183 4.183 8 N -0.567 5.567 9 Si 0.774 3.226 10 H -0.183 1.183 11 H -0.211 1.211 12 H -0.206 1.206 13 S 2.808 3.192 14 O -0.988 6.988 15 O -1.002 7.002 16 N -0.877 5.877 17 C -0.001 4.001 18 C -0.143 4.143 19 H 0.128 0.872 20 C -0.193 4.193 21 C -0.030 4.030 22 O -0.325 6.325 23 C -0.030 4.030 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.258 0.742 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.247 -4.054 10.732 13.570 hybrid contribution 0.611 -0.100 -0.833 1.038 sum 7.858 -4.154 9.899 13.304 Atomic orbital electron populations 1.22185 0.96028 1.03123 1.01255 1.21228 0.94522 0.81306 1.03273 1.57610 1.79400 1.24088 1.22607 1.18744 0.96566 0.90944 0.80233 1.21808 1.06504 1.25070 1.03662 0.90678 1.25695 0.99796 0.94924 0.97913 1.70069 1.38986 1.30484 1.17176 0.85642 0.79994 0.78405 0.78544 1.18288 1.21132 1.20630 1.01106 0.73207 0.72715 0.72150 1.93532 1.71048 1.76053 1.58198 1.93526 1.86721 1.33796 1.86163 1.55597 1.24302 1.67955 1.39797 1.21460 0.86955 0.98888 0.92829 1.22776 0.93523 0.97206 1.00770 0.87201 1.23228 0.94666 1.01044 1.00328 1.23715 0.95075 0.81484 1.02757 1.88845 1.37676 1.30946 1.75053 1.23376 0.87182 0.95802 0.96616 0.93585 0.93408 0.89142 0.90172 0.89554 0.96535 0.96201 0.92690 0.74214 0.90896 0.91995 0.91666 0.87738 0.89935 0.88359 0.90002 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.11 10.24 71.98 0.74 -4.37 16 2 C 0.12 4.06 6.02 86.38 0.52 4.58 16 3 N -1.00 -39.85 2.84 -519.84 -1.48 -41.33 16 4 C 0.26 12.73 5.48 85.64 0.47 13.20 16 5 C -0.53 -26.53 8.13 25.60 0.21 -26.32 16 6 H 0.08 3.55 6.45 -2.91 -0.02 3.53 16 7 C 0.02 0.85 5.46 84.65 0.46 1.32 16 8 N -0.93 -52.58 13.29 21.44 0.28 -52.30 16 9 Si 0.95 41.20 29.54 68.60 2.03 43.23 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 13 S 2.80 106.44 6.11 -56.49 -0.35 106.10 16 14 O -1.00 -38.48 17.11 -128.00 -2.19 -40.68 16 15 O -1.02 -46.95 16.08 -128.00 -2.06 -49.01 16 16 N -1.11 -33.16 5.85 -187.50 -1.10 -34.26 16 17 C 0.12 3.93 5.26 86.38 0.45 4.38 16 18 C -0.12 -2.86 3.20 -9.80 -0.03 -2.89 16 19 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 20 C -0.15 -3.46 6.71 31.90 0.21 -3.25 16 21 C 0.05 0.94 7.72 72.67 0.56 1.50 16 22 O -0.41 -10.91 11.52 -148.98 -1.72 -12.62 16 23 C 0.05 1.07 6.87 72.35 0.50 1.57 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 27 H 0.08 2.68 8.06 -2.39 -0.02 2.66 16 28 H 0.09 2.44 7.62 -2.39 -0.02 2.42 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.02 1.10 6.84 -2.39 -0.02 1.09 16 31 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 32 H 0.42 9.63 8.23 -96.75 -0.80 8.83 16 33 H 0.07 2.64 5.50 -2.39 -0.01 2.63 16 34 H 0.06 2.21 7.70 -2.39 -0.02 2.19 16 35 H 0.06 1.77 7.87 -2.39 -0.02 1.75 16 36 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.08 1.97 7.53 -2.39 -0.02 1.95 16 Total: -1.00 -67.10 336.11 -2.25 -69.34 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.24 Total: 21.82 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 4.09 Total: -10.30 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -2.29 Total: -127.89 kcal Atomic # 8 Polarization: -96.35 SS G_CDS: -5.96 Total: -102.31 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 16 Polarization: 106.44 SS G_CDS: -0.35 Total: 106.10 kcal Total: -67.10 -2.25 -69.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336917884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.102 kcal (2) G-P(sol) polarization free energy of solvation -67.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds