Wall clock time and date at job start Tue Mar 31 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47088 * 2 1 4 4 C 1.46497 * 119.99972 * 84.99961 * 3 2 1 5 5 C 1.50694 * 109.47115 * 84.99899 * 4 3 2 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 S 1.65601 * 119.99689 * 264.99811 * 3 2 1 14 14 O 1.42095 * 106.40327 * 23.54214 * 13 3 2 15 15 O 1.42104 * 106.39941 * 156.46006 * 13 3 2 16 16 N 1.65595 * 107.21482 * 269.99791 * 13 3 2 17 17 C 1.47425 * 125.65138 * 269.68939 * 16 13 3 18 18 C 1.55130 * 104.72209 * 155.82194 * 17 16 13 19 19 H 1.09004 * 111.19266 * 279.19496 * 18 17 16 20 20 O 1.42899 * 110.90780 * 155.27800 * 18 17 16 21 21 C 1.55156 * 101.48785 * 37.29772 * 18 17 16 22 22 H 1.09004 * 110.87229 * 82.76305 * 21 18 17 23 23 C 1.52998 * 110.72466 * 205.96875 * 21 18 17 24 24 C 1.47025 * 125.64677 * 90.00526 * 16 13 3 25 25 H 1.08997 * 109.47368 * 300.00184 * 1 2 3 26 26 H 1.09005 * 109.47070 * 60.00066 * 1 2 3 27 27 H 1.08997 * 109.47210 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47368 * 239.99816 * 2 1 3 29 29 H 1.09000 * 109.46671 * 119.99700 * 2 1 3 30 30 H 1.09007 * 109.47078 * 324.99538 * 4 3 2 31 31 H 1.09003 * 109.46733 * 205.00261 * 4 3 2 32 32 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 33 33 H 1.08995 * 110.36920 * 274.75185 * 17 16 13 34 34 H 1.09004 * 110.36428 * 37.07783 * 17 16 13 35 35 H 0.96707 * 113.99714 * 67.97277 * 20 18 17 36 36 H 1.08994 * 109.47363 * 174.97724 * 23 21 18 37 37 H 1.09002 * 109.46942 * 294.97850 * 23 21 18 38 38 H 1.09001 * 109.46913 * 54.97473 * 23 21 18 39 39 H 1.08998 * 109.88481 * 300.43952 * 24 16 13 40 40 H 1.09000 * 109.88059 * 61.60166 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4947 1.7888 1.8823 6 1 4.1720 1.1111 1.3840 7 6 3.8524 2.3606 3.0849 8 7 3.0274 3.1856 3.6920 9 14 5.5088 1.9635 3.8518 10 1 5.6506 2.7010 5.1330 11 1 5.5984 0.5036 4.1080 12 1 6.5943 2.3708 2.9239 13 16 2.4122 2.1202 -1.4287 14 8 1.6869 1.4415 -2.4448 15 8 2.3057 3.5186 -1.1999 16 7 4.0144 1.8136 -1.7136 17 6 5.1420 2.6535 -1.2703 18 6 6.3544 1.6875 -1.2129 19 1 6.3512 1.1055 -0.2912 20 8 7.5832 2.4019 -1.3608 21 6 6.0863 0.7815 -2.4436 22 1 6.4439 1.2536 -3.3587 23 6 6.7342 -0.5918 -2.2564 24 6 4.5477 0.6622 -2.4562 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3616 1.8098 1.9453 31 1 2.0921 3.1803 1.0755 32 1 3.2790 3.5875 4.5382 33 1 5.3248 3.4530 -1.9883 34 1 4.9408 3.0682 -0.2825 35 1 7.7932 2.9815 -0.6157 36 1 6.4596 -1.2396 -3.0888 37 1 7.8181 -0.4808 -2.2246 38 1 6.3867 -1.0332 -1.3223 39 1 4.2438 -0.2651 -1.9705 40 1 4.1827 0.6821 -3.4831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336937870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:11 Heat of formation + Delta-G solvation = -130.142551 kcal Electronic energy + Delta-G solvation = -23635.621860 eV Core-core repulsion = 20191.007441 eV Total energy + Delta-G solvation = -3444.614419 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.94314 -36.69887 -36.04231 -35.47327 -35.23291 -32.77357 -32.22662 -29.96708 -28.23486 -26.64438 -25.88161 -23.17520 -22.20007 -21.62352 -20.28215 -18.48722 -17.53325 -17.08858 -16.88527 -16.32693 -15.73909 -15.10446 -14.64810 -14.40862 -13.84310 -13.80181 -13.53295 -13.23838 -13.11592 -12.92186 -12.38344 -12.13160 -12.07190 -11.99125 -11.79716 -11.70961 -11.53844 -11.37462 -11.36728 -11.09748 -11.03147 -10.85434 -10.53519 -10.45428 -10.28207 -10.13381 -9.92543 -9.78891 -8.69090 -8.54588 -8.09015 -6.16751 -4.23681 1.19411 3.17332 3.24632 3.25982 3.43047 4.06803 4.26263 4.29360 4.47013 4.72960 5.01549 5.12183 5.17501 5.36273 5.40002 5.45733 5.57112 5.59560 5.74270 5.78264 5.82767 5.88127 6.00751 6.05380 6.12390 6.15246 6.29290 6.31166 6.44552 6.58403 6.64262 6.74780 7.31856 7.40619 7.62139 7.70820 7.80458 8.10478 8.81030 9.41799 10.91175 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.011159 B = 0.009623 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.628189 B = 2909.046053 C = 4435.438792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.990 5.990 4 C 0.245 3.755 5 C -0.540 4.540 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.286 1.286 11 H -0.277 1.277 12 H -0.276 1.276 13 S 2.798 3.202 14 O -0.994 6.994 15 O -0.974 6.974 16 N -1.013 6.013 17 C 0.095 3.905 18 C 0.096 3.904 19 H 0.079 0.921 20 O -0.562 6.562 21 C -0.093 4.093 22 H 0.090 0.910 23 C -0.141 4.141 24 C 0.129 3.871 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.265 0.735 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.382 0.618 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.714 -6.360 -8.688 11.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.832 5.832 4 C 0.123 3.877 5 C -0.579 4.579 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.212 1.212 11 H -0.202 1.202 12 H -0.202 1.202 13 S 2.808 3.192 14 O -0.978 6.978 15 O -0.958 6.958 16 N -0.852 5.852 17 C -0.031 4.031 18 C 0.036 3.964 19 H 0.097 0.903 20 O -0.367 6.367 21 C -0.113 4.113 22 H 0.108 0.892 23 C -0.199 4.199 24 C 0.003 3.997 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.230 0.770 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.019 -6.026 -9.615 12.038 hybrid contribution 1.097 -0.103 1.461 1.830 sum 5.116 -6.129 -8.154 11.412 Atomic orbital electron populations 1.22205 0.96874 1.01413 1.02407 1.20978 0.93707 0.82917 1.02013 1.57811 1.78118 1.22974 1.24288 1.19193 0.97324 0.92204 0.79015 1.21505 1.02283 1.28036 1.06075 0.92040 1.24967 0.97203 0.94873 0.96871 1.69923 1.35968 1.29648 1.17052 0.86656 0.84020 0.78504 0.78753 1.21183 1.20234 1.20175 1.01421 0.71647 0.73343 0.72801 1.93532 1.69965 1.76552 1.57780 1.93576 1.85468 1.30754 1.86005 1.59007 1.23634 1.34209 1.68322 1.22646 0.85687 0.93343 1.01458 1.23138 0.82909 0.92237 0.98116 0.90323 1.86412 1.39572 1.62428 1.48297 1.22175 0.94122 0.96251 0.98727 0.89203 1.21761 1.00902 0.95230 1.02001 1.21697 0.92923 0.88784 0.96344 0.92051 0.92653 0.92317 0.92043 0.90244 0.94345 0.93232 0.92485 0.91397 0.88749 0.77009 0.92285 0.92006 0.92177 0.91601 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.24 37.16 0.38 -2.29 16 2 C 0.13 2.24 6.06 -4.04 -0.02 2.22 16 3 N -0.99 -20.24 2.82 -115.66 -0.33 -20.56 16 4 C 0.24 5.93 5.43 -5.20 -0.03 5.91 16 5 C -0.54 -13.51 9.38 -34.44 -0.32 -13.84 16 6 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 9 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 13 S 2.80 56.68 6.31 -107.50 -0.68 56.00 16 14 O -0.99 -20.47 16.69 -57.17 -0.95 -21.43 16 15 O -0.97 -22.96 16.27 -57.17 -0.93 -23.89 16 16 N -1.01 -17.49 3.75 -111.29 -0.42 -17.91 16 17 C 0.09 1.57 6.72 -2.41 -0.02 1.56 16 18 C 0.10 1.38 3.89 -24.46 -0.10 1.28 16 19 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 20 O -0.56 -7.46 13.47 -35.23 -0.47 -7.94 16 21 C -0.09 -1.18 3.28 -88.78 -0.29 -1.47 16 22 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 23 C -0.14 -1.50 9.13 37.16 0.34 -1.16 16 24 C 0.13 1.81 6.58 -3.06 -0.02 1.79 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.94 7.61 -51.93 -0.40 0.55 16 29 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 30 H 0.04 0.97 8.11 -51.92 -0.42 0.55 16 31 H 0.05 1.34 6.91 -51.93 -0.36 0.98 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 35 H 0.38 3.88 9.12 45.56 0.42 4.29 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 39 H 0.07 0.86 7.82 -51.93 -0.41 0.45 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 342.89 15.07 5.17 5.17 Total: -1.00 -31.11 342.89 -8.85 -39.96 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.78 Total: 4.24 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.18 Total: -4.43 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.01 Total: -62.43 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -2.36 Total: -53.25 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 56.68 SS G_CDS: -0.68 Total: 56.00 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.11 -8.85 -39.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336937870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.185 kcal (2) G-P(sol) polarization free energy of solvation -31.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds