Wall clock time and date at job start Tue Mar 31 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47088 * 2 1 4 4 C 1.46497 * 119.99972 * 84.99961 * 3 2 1 5 5 C 1.50694 * 109.47115 * 84.99899 * 4 3 2 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 S 1.65601 * 119.99689 * 264.99811 * 3 2 1 14 14 O 1.42095 * 106.40327 * 23.54214 * 13 3 2 15 15 O 1.42104 * 106.39941 * 156.46006 * 13 3 2 16 16 N 1.65595 * 107.21482 * 269.99791 * 13 3 2 17 17 C 1.47425 * 125.65138 * 269.68939 * 16 13 3 18 18 C 1.55130 * 104.72209 * 155.82194 * 17 16 13 19 19 H 1.09004 * 111.19266 * 279.19496 * 18 17 16 20 20 O 1.42899 * 110.90780 * 155.27800 * 18 17 16 21 21 C 1.55156 * 101.48785 * 37.29772 * 18 17 16 22 22 H 1.09004 * 110.87229 * 82.76305 * 21 18 17 23 23 C 1.52998 * 110.72466 * 205.96875 * 21 18 17 24 24 C 1.47025 * 125.64677 * 90.00526 * 16 13 3 25 25 H 1.08997 * 109.47368 * 300.00184 * 1 2 3 26 26 H 1.09005 * 109.47070 * 60.00066 * 1 2 3 27 27 H 1.08997 * 109.47210 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47368 * 239.99816 * 2 1 3 29 29 H 1.09000 * 109.46671 * 119.99700 * 2 1 3 30 30 H 1.09007 * 109.47078 * 324.99538 * 4 3 2 31 31 H 1.09003 * 109.46733 * 205.00261 * 4 3 2 32 32 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 33 33 H 1.08995 * 110.36920 * 274.75185 * 17 16 13 34 34 H 1.09004 * 110.36428 * 37.07783 * 17 16 13 35 35 H 0.96707 * 113.99714 * 67.97277 * 20 18 17 36 36 H 1.08994 * 109.47363 * 174.97724 * 23 21 18 37 37 H 1.09002 * 109.46942 * 294.97850 * 23 21 18 38 38 H 1.09001 * 109.46913 * 54.97473 * 23 21 18 39 39 H 1.08998 * 109.88481 * 300.43952 * 24 16 13 40 40 H 1.09000 * 109.88059 * 61.60166 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4947 1.7888 1.8823 6 1 4.1720 1.1111 1.3840 7 6 3.8524 2.3606 3.0849 8 7 3.0274 3.1856 3.6920 9 14 5.5088 1.9635 3.8518 10 1 5.6506 2.7010 5.1330 11 1 5.5984 0.5036 4.1080 12 1 6.5943 2.3708 2.9239 13 16 2.4122 2.1202 -1.4287 14 8 1.6869 1.4415 -2.4448 15 8 2.3057 3.5186 -1.1999 16 7 4.0144 1.8136 -1.7136 17 6 5.1420 2.6535 -1.2703 18 6 6.3544 1.6875 -1.2129 19 1 6.3512 1.1055 -0.2912 20 8 7.5832 2.4019 -1.3608 21 6 6.0863 0.7815 -2.4436 22 1 6.4439 1.2536 -3.3587 23 6 6.7342 -0.5918 -2.2564 24 6 4.5477 0.6622 -2.4562 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3616 1.8098 1.9453 31 1 2.0921 3.1803 1.0755 32 1 3.2790 3.5875 4.5382 33 1 5.3248 3.4530 -1.9883 34 1 4.9408 3.0682 -0.2825 35 1 7.7932 2.9815 -0.6157 36 1 6.4596 -1.2396 -3.0888 37 1 7.8181 -0.4808 -2.2246 38 1 6.3867 -1.0332 -1.3223 39 1 4.2438 -0.2651 -1.9705 40 1 4.1827 0.6821 -3.4831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336937870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:11 Heat of formation + Delta-G solvation = -154.401486 kcal Electronic energy + Delta-G solvation = -23636.673806 eV Core-core repulsion = 20191.007441 eV Total energy + Delta-G solvation = -3445.666366 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09216 -38.38938 -37.68767 -36.94608 -36.58606 -34.69260 -33.31081 -31.54540 -29.46115 -28.48304 -26.90747 -24.94992 -23.50081 -23.12607 -21.32956 -20.00755 -18.86326 -18.72156 -18.30488 -18.17346 -17.31425 -16.54685 -16.16313 -15.75545 -15.30878 -15.06089 -14.77574 -14.62961 -14.56062 -14.20027 -13.83548 -13.65662 -13.46879 -13.38388 -13.27091 -13.22270 -13.07753 -12.92928 -12.75275 -12.67791 -12.43206 -12.24639 -12.13634 -11.93042 -11.76320 -11.61769 -11.34351 -11.02986 -10.56787 -10.03055 -9.77525 -8.15772 -6.30001 -0.40453 1.43649 1.45758 1.53415 1.91668 2.42490 2.51769 3.13438 3.16840 3.20280 3.58704 3.76147 3.93878 4.04731 4.26620 4.41271 4.41806 4.44680 4.50464 4.57680 4.68720 4.77066 4.85200 4.91327 4.96422 5.03299 5.10789 5.13314 5.22106 5.25656 5.37257 5.41407 5.43762 5.55585 5.76069 5.96624 6.11135 6.78228 6.81838 7.40024 8.92312 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.011159 B = 0.009623 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.628189 B = 2909.046053 C = 4435.438792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.995 5.995 4 C 0.261 3.739 5 C -0.537 4.537 6 H 0.073 0.927 7 C 0.010 3.990 8 N -0.930 5.930 9 Si 0.957 3.043 10 H -0.292 1.292 11 H -0.268 1.268 12 H -0.257 1.257 13 S 2.809 3.191 14 O -0.997 6.997 15 O -1.015 7.015 16 N -1.013 6.013 17 C 0.091 3.909 18 C 0.103 3.897 19 H 0.074 0.926 20 O -0.564 6.564 21 C -0.086 4.086 22 H 0.096 0.904 23 C -0.137 4.137 24 C 0.118 3.882 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.020 0.980 31 H 0.013 0.987 32 H 0.265 0.735 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.395 0.605 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.581 -8.530 -9.645 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.836 5.836 4 C 0.137 3.863 5 C -0.577 4.577 6 H 0.091 0.909 7 C -0.189 4.189 8 N -0.570 5.570 9 Si 0.782 3.218 10 H -0.218 1.218 11 H -0.193 1.193 12 H -0.181 1.181 13 S 2.820 3.180 14 O -0.981 6.981 15 O -0.999 6.999 16 N -0.855 5.855 17 C -0.036 4.036 18 C 0.043 3.957 19 H 0.092 0.908 20 O -0.371 6.371 21 C -0.105 4.105 22 H 0.115 0.885 23 C -0.194 4.194 24 C -0.006 4.006 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.038 0.962 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.245 0.755 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.882 -8.220 -10.595 14.643 hybrid contribution 0.491 0.576 1.694 1.856 sum 6.373 -7.643 -8.901 13.351 Atomic orbital electron populations 1.22197 0.95889 1.03338 1.01277 1.21272 0.94672 0.81194 1.03276 1.57723 1.78881 1.24171 1.22776 1.18727 0.96803 0.90597 0.80168 1.21758 1.02426 1.27559 1.05915 0.90851 1.25840 1.00873 0.94656 0.97527 1.70074 1.38179 1.31175 1.17546 0.85621 0.79970 0.78512 0.77729 1.21808 1.19256 1.18127 1.00843 0.72263 0.72348 0.72559 1.93516 1.70692 1.76313 1.57605 1.93520 1.86426 1.33484 1.86486 1.58733 1.22692 1.35524 1.68531 1.22728 0.86609 0.94204 1.00035 1.23038 0.82129 0.91705 0.98870 0.90780 1.86397 1.38717 1.62676 1.49291 1.22189 0.93007 0.97242 0.98098 0.88547 1.21744 1.00881 0.94035 1.02777 1.22042 0.94005 0.87912 0.96676 0.93429 0.93523 0.88870 0.89615 0.90008 0.96175 0.96849 0.92651 0.90930 0.91561 0.75506 0.90314 0.91627 0.92339 0.90242 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.11 10.24 71.98 0.74 -4.37 16 2 C 0.12 4.01 6.06 86.38 0.52 4.54 16 3 N -0.99 -40.84 2.82 -519.84 -1.47 -42.31 16 4 C 0.26 13.06 5.43 85.63 0.47 13.52 16 5 C -0.54 -27.06 9.38 25.60 0.24 -26.82 16 6 H 0.07 3.45 7.81 -2.91 -0.02 3.42 16 7 C 0.01 0.55 5.46 84.66 0.46 1.01 16 8 N -0.93 -53.07 13.29 21.45 0.28 -52.78 16 9 Si 0.96 40.04 29.54 68.60 2.03 42.07 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 12 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 13 S 2.81 114.08 6.31 -56.49 -0.36 113.73 16 14 O -1.00 -40.13 16.69 -128.00 -2.14 -42.27 16 15 O -1.01 -49.52 16.27 -128.00 -2.08 -51.60 16 16 N -1.01 -34.01 3.75 -506.00 -1.90 -35.91 16 17 C 0.09 2.95 6.72 86.93 0.58 3.53 16 18 C 0.10 2.74 3.89 32.06 0.12 2.86 16 19 H 0.07 2.05 8.04 -2.38 -0.02 2.03 16 20 O -0.56 -13.62 13.47 -148.98 -2.01 -15.63 16 21 C -0.09 -1.91 3.28 -9.60 -0.03 -1.94 16 22 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 23 C -0.14 -2.40 9.13 71.98 0.66 -1.74 16 24 C 0.12 3.02 6.58 86.73 0.57 3.59 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.09 2.42 7.61 -2.39 -0.02 2.40 16 29 H 0.08 2.67 8.11 -2.39 -0.02 2.65 16 30 H 0.02 1.07 8.11 -2.38 -0.02 1.05 16 31 H 0.01 0.77 6.91 -2.39 -0.02 0.75 16 32 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.40 7.17 9.12 -74.05 -0.68 6.49 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 39 H 0.08 1.81 7.82 -2.39 -0.02 1.80 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -67.35 342.89 -2.96 -70.31 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.35 Total: 20.23 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 4.33 Total: -5.83 kcal Atomic # 7 Polarization: -127.92 SS G_CDS: -3.08 Total: -131.00 kcal Atomic # 8 Polarization: -103.27 SS G_CDS: -6.23 Total: -109.50 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Atomic # 16 Polarization: 114.08 SS G_CDS: -0.36 Total: 113.73 kcal Total: -67.35 -2.96 -70.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336937870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.092 kcal (2) G-P(sol) polarization free energy of solvation -67.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds