Wall clock time and date at job start Tue Mar 31 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47275 * 2 1 4 4 C 1.46493 * 120.00444 * 275.27738 * 3 2 1 5 5 C 1.50701 * 109.47177 * 274.72646 * 4 3 2 6 6 H 1.07996 * 119.99972 * 359.97438 * 5 4 3 7 7 C 1.37887 * 119.99644 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99535 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00352 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47016 * 89.99648 * 9 7 5 11 11 H 1.48490 * 109.47144 * 210.00167 * 9 7 5 12 12 H 1.48510 * 109.46829 * 330.00190 * 9 7 5 13 13 S 1.65608 * 119.99583 * 95.00419 * 3 2 1 14 14 O 1.42100 * 106.40059 * 203.54152 * 13 3 2 15 15 O 1.42096 * 106.40050 * 336.46185 * 13 3 2 16 16 N 1.65599 * 107.21718 * 90.00246 * 13 3 2 17 17 C 1.47430 * 125.64634 * 269.69173 * 16 13 3 18 18 C 1.55130 * 104.72253 * 155.81951 * 17 16 13 19 19 H 1.08998 * 110.90270 * 155.27447 * 18 17 16 20 20 O 1.42896 * 111.22473 * 279.17401 * 18 17 16 21 21 C 1.55159 * 101.48543 * 37.29234 * 18 17 16 22 22 C 1.47021 * 125.64930 * 90.00066 * 16 13 3 23 23 H 1.09002 * 109.87847 * 300.43242 * 22 16 13 24 24 C 1.52996 * 109.88698 * 61.60376 * 22 16 13 25 25 H 1.09000 * 109.46714 * 299.99336 * 1 2 3 26 26 H 1.08990 * 109.47196 * 59.99425 * 1 2 3 27 27 H 1.09005 * 109.47015 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47025 * 239.99991 * 2 1 3 29 29 H 1.09001 * 109.47382 * 120.01018 * 2 1 3 30 30 H 1.09004 * 109.46868 * 34.72321 * 4 3 2 31 31 H 1.09004 * 109.47439 * 154.72444 * 4 3 2 32 32 H 0.97001 * 119.99867 * 179.97438 * 8 7 5 33 33 H 1.08998 * 110.36241 * 274.74505 * 17 16 13 34 34 H 1.08994 * 110.36756 * 37.06935 * 17 16 13 35 35 H 0.96701 * 113.99759 * 292.21179 * 20 18 17 36 36 H 1.09000 * 110.71401 * 205.96883 * 21 18 17 37 37 H 1.08998 * 110.71781 * 82.69606 * 21 18 17 38 38 H 1.08998 * 109.46928 * 59.99815 * 24 22 16 39 39 H 1.08996 * 109.47285 * 180.02562 * 24 22 16 40 40 H 1.09000 * 109.46597 * 300.00150 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1526 2.1107 -1.2632 5 6 3.4890 1.7971 -1.8850 6 1 4.1705 1.1221 -1.3885 7 6 3.8418 2.3718 -3.0876 8 7 5.0078 2.0977 -3.6304 9 14 2.6628 3.5387 -3.9467 10 1 2.9213 4.9281 -3.4905 11 1 2.8649 3.4541 -5.4153 12 1 1.2648 3.1614 -3.6168 13 16 2.4123 2.1200 1.4288 14 8 2.3058 3.5184 1.2000 15 8 1.6870 1.4412 2.4448 16 7 4.0146 1.8135 1.7137 17 6 4.5490 0.6621 2.4636 18 6 5.9961 0.4840 1.9339 19 1 6.6219 -0.0161 2.6730 20 8 6.0092 -0.2238 0.6927 21 6 6.4371 1.9586 1.7379 22 6 5.1394 2.6477 1.2661 23 1 5.1345 2.7241 0.1788 24 6 5.0340 4.0411 1.8891 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5140 0.8899 30 1 1.3558 1.8093 -1.9433 31 1 2.0825 3.1818 -1.0735 32 1 5.2559 2.5018 -4.4767 33 1 4.5574 0.8765 3.5323 34 1 3.9581 -0.2308 2.2596 35 1 5.7406 -1.1500 0.7652 36 1 7.2118 2.0311 0.9746 37 1 6.7806 2.3867 2.6796 38 1 5.0592 3.9562 2.9755 39 1 5.8704 4.6537 1.5527 40 1 4.0971 4.5062 1.5827 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337162113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:04 Heat of formation + Delta-G solvation = -145.916237 kcal Electronic energy + Delta-G solvation = -24067.696116 eV Core-core repulsion = 20622.397698 eV Total energy + Delta-G solvation = -3445.298418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.04096 -38.39482 -37.75083 -36.92991 -36.45605 -34.62263 -32.07048 -31.81836 -30.79349 -28.90858 -26.62150 -24.58840 -23.22466 -22.74037 -21.89901 -19.75964 -19.07134 -18.67876 -18.38537 -18.29443 -17.19770 -16.30253 -15.97267 -15.70188 -15.46498 -15.19471 -14.83320 -14.64383 -14.53366 -14.18016 -13.79262 -13.68953 -13.53604 -13.48900 -13.26270 -13.09689 -12.97414 -12.78825 -12.73520 -12.62716 -12.24746 -12.14797 -12.11977 -11.97769 -11.75373 -11.54341 -11.41925 -10.91903 -10.72882 -9.91214 -9.71129 -8.22719 -6.25528 -0.34343 1.35091 1.38492 1.45306 1.93991 2.36181 2.53378 3.10077 3.18734 3.48571 3.54618 3.84464 3.91805 4.10991 4.25917 4.37974 4.42034 4.49890 4.59503 4.63715 4.67149 4.79309 4.84695 4.90668 4.94681 4.98967 5.01592 5.03711 5.13331 5.34903 5.42141 5.46060 5.47801 5.50945 5.56809 5.88725 6.37946 6.83115 7.03833 7.37235 8.92064 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.008914 C = 0.007228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.482776 B = 3140.465661 C = 3872.650060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.992 5.992 4 C 0.224 3.776 5 C -0.525 4.525 6 H 0.059 0.941 7 C 0.024 3.976 8 N -0.934 5.934 9 Si 0.917 3.083 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.246 1.246 13 S 2.806 3.194 14 O -1.006 7.006 15 O -0.999 6.999 16 N -1.006 6.006 17 C 0.086 3.914 18 C 0.096 3.904 19 H 0.115 0.885 20 O -0.575 6.575 21 C -0.112 4.112 22 C 0.147 3.853 23 H 0.047 0.953 24 C -0.179 4.179 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.389 0.611 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.184 -4.921 12.865 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.832 5.832 4 C 0.099 3.901 5 C -0.564 4.564 6 H 0.077 0.923 7 C -0.175 4.175 8 N -0.574 5.574 9 Si 0.742 3.258 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.170 1.170 13 S 2.817 3.183 14 O -0.990 6.990 15 O -0.983 6.983 16 N -0.847 5.847 17 C -0.040 4.040 18 C 0.036 3.964 19 H 0.132 0.868 20 O -0.382 6.382 21 C -0.150 4.150 22 C 0.041 3.959 23 H 0.065 0.935 24 C -0.237 4.237 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.238 0.762 36 H 0.093 0.907 37 H 0.138 0.862 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.594 -3.798 13.021 13.576 hybrid contribution -0.260 -0.028 -1.110 1.141 sum -0.854 -3.826 11.910 12.539 Atomic orbital electron populations 1.22207 0.95299 1.03509 1.01629 1.21240 0.94885 0.81185 1.03026 1.57581 1.79186 1.24047 1.22373 1.19278 0.96721 0.91682 0.82425 1.21622 1.01421 1.27707 1.05693 0.92302 1.25567 0.96313 0.97732 0.97879 1.70037 1.22458 1.45542 1.19335 0.86170 0.81330 0.80126 0.78213 1.19994 1.20554 1.16973 1.00941 0.72289 0.72594 0.72494 1.93484 1.86481 1.32655 1.86393 1.93520 1.70934 1.76467 1.57400 1.58795 1.22572 1.35607 1.67681 1.23019 0.96331 0.87944 0.96672 1.23120 0.93915 0.93092 0.86305 0.86757 1.86693 1.90756 1.28488 1.32262 1.22784 0.95364 0.93548 1.03352 1.21288 0.86140 0.90428 0.98091 0.93483 1.22471 1.03457 0.96093 1.01708 0.93303 0.92783 0.88923 0.90466 0.90115 0.93936 0.95342 0.92692 0.88478 0.90391 0.76160 0.90737 0.86212 0.90539 0.90277 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.84 10.23 71.98 0.74 -4.11 16 2 C 0.12 4.08 6.06 86.38 0.52 4.61 16 3 N -0.99 -40.62 2.82 -519.86 -1.47 -42.09 16 4 C 0.22 10.65 4.50 85.63 0.39 11.03 16 5 C -0.53 -28.73 9.49 25.60 0.24 -28.48 16 6 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 7 C 0.02 1.37 5.47 84.66 0.46 1.83 16 8 N -0.93 -56.50 13.96 21.45 0.30 -56.20 16 9 Si 0.92 43.51 27.47 68.60 1.88 45.39 16 10 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 13 S 2.81 112.36 6.27 -56.49 -0.35 112.00 16 14 O -1.01 -46.11 13.82 -128.00 -1.77 -47.88 16 15 O -1.00 -39.45 16.69 -128.00 -2.14 -41.59 16 16 N -1.01 -34.76 3.45 -483.86 -1.67 -36.43 16 17 C 0.09 2.16 6.74 86.93 0.59 2.74 16 18 C 0.10 2.24 4.43 32.06 0.14 2.39 16 19 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 20 O -0.57 -17.36 13.48 -148.98 -2.01 -19.37 16 21 C -0.11 -2.95 6.21 31.78 0.20 -2.76 16 22 C 0.15 5.18 3.67 45.34 0.17 5.34 16 23 H 0.05 2.16 7.69 -2.39 -0.02 2.14 16 24 C -0.18 -5.72 9.09 71.98 0.65 -5.07 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.05 1.60 8.13 -2.39 -0.02 1.58 16 27 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.08 2.65 8.11 -2.38 -0.02 2.63 16 29 H 0.08 2.37 7.61 -2.39 -0.02 2.35 16 30 H 0.04 1.95 7.15 -2.39 -0.02 1.93 16 31 H 0.03 1.43 6.34 -2.39 -0.02 1.42 16 32 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.39 8.11 9.12 -74.06 -0.68 7.43 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.12 2.24 7.84 -2.39 -0.02 2.22 16 38 H 0.08 2.00 8.13 -2.39 -0.02 1.98 16 39 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.06 2.17 5.72 -2.39 -0.01 2.15 16 Total: -1.00 -73.60 333.81 -2.83 -76.43 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.30 Total: 22.21 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 4.10 Total: -12.47 kcal Atomic # 7 Polarization: -131.89 SS G_CDS: -2.84 Total: -134.73 kcal Atomic # 8 Polarization: -102.92 SS G_CDS: -5.91 Total: -108.83 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal Atomic # 16 Polarization: 112.36 SS G_CDS: -0.35 Total: 112.00 kcal Total: -73.60 -2.83 -76.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337162113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.491 kcal (2) G-P(sol) polarization free energy of solvation -73.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds