Wall clock time and date at job start Tue Mar 31 2020 03:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34861 * 116.99920 * 2 1 4 4 N 1.31572 * 119.40922 * 0.02562 * 3 2 1 5 5 C 1.33031 * 121.66498 * 180.02562 * 4 3 2 6 6 C 1.36568 * 120.34164 * 359.97438 * 5 4 3 7 7 C 1.40449 * 118.83223 * 0.02562 * 6 5 4 8 8 N 1.33658 * 120.76999 * 179.71991 * 7 6 5 9 9 C 1.33453 * 120.00051 * 355.75669 * 8 7 6 10 10 O 1.21908 * 119.99830 * 64.92869 * 9 8 7 11 11 N 1.34770 * 120.00166 * 244.93105 * 9 8 7 12 12 C 1.46502 * 120.00069 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47022 * 185.29111 * 12 11 9 14 14 C 1.50699 * 115.54998 * 65.25019 * 13 12 11 15 15 H 1.08000 * 119.99716 * 273.26866 * 14 13 12 16 16 C 1.37877 * 120.00188 * 93.27126 * 14 13 12 17 17 N 1.31517 * 119.99662 * 4.49674 * 16 14 13 18 18 Si 1.86801 * 120.00191 * 184.49888 * 16 14 13 19 19 H 1.48508 * 109.46705 * 59.99930 * 18 16 14 20 20 H 1.48500 * 109.47224 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.46987 * 300.00313 * 18 16 14 22 22 C 1.52999 * 117.49472 * 279.57638 * 13 12 11 23 23 C 1.53002 * 117.49763 * 210.91606 * 13 12 11 24 24 N 1.35790 * 119.40839 * 179.97438 * 3 2 1 25 25 H 0.97001 * 120.24399 * 0.02562 * 24 3 2 26 26 H 1.09003 * 109.47357 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47209 * 299.99879 * 1 2 3 28 28 H 1.08998 * 109.47103 * 60.00337 * 1 2 3 29 29 H 1.07998 * 119.82544 * 180.02562 * 5 4 3 30 30 H 1.08000 * 120.58368 * 179.97438 * 6 5 4 31 31 H 0.96997 * 119.99915 * 359.97438 * 11 9 8 32 32 H 1.09003 * 109.46678 * 305.28939 * 12 11 9 33 33 H 1.09000 * 109.47556 * 65.28532 * 12 11 9 34 34 H 0.97003 * 119.99553 * 184.99711 * 17 16 14 35 35 H 1.08991 * 117.50134 * 0.02562 * 22 13 12 36 36 H 1.09003 * 117.49221 * 145.02456 * 22 13 12 37 37 H 1.08998 * 117.50388 * 214.97885 * 23 13 12 38 38 H 1.09004 * 117.49688 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2016 0.0000 4 7 1.3363 2.2976 0.0005 5 6 1.8931 3.5058 0.0000 6 6 3.2523 3.6390 -0.0005 7 6 4.0464 2.4806 -0.0011 8 7 5.3802 2.5659 -0.0072 9 6 5.9722 3.7585 -0.0984 10 8 5.8413 4.5741 0.7982 11 7 6.7146 4.0613 -1.1816 12 6 7.3649 5.3703 -1.2815 13 6 8.0289 5.5066 -2.6531 14 6 7.0892 5.5254 -3.8311 15 1 6.7715 4.5975 -4.2833 16 6 6.6351 6.7271 -4.3317 17 7 7.0901 7.8586 -3.8392 18 14 5.3738 6.7483 -5.7095 19 1 4.1386 6.0571 -5.2603 20 1 5.0526 8.1539 -6.0649 21 1 5.9271 6.0507 -6.8978 22 6 9.3921 4.8398 -2.8474 23 6 9.2929 6.3639 -2.7440 24 7 3.4209 1.2587 0.0005 25 1 3.9443 0.4420 0.0005 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.2670 4.3858 0.0009 30 1 3.7085 4.6180 -0.0013 31 1 6.8190 3.4122 -1.8949 32 1 6.6197 6.1563 -1.1587 33 1 8.1206 5.4611 -0.5013 34 1 6.7185 8.7026 -4.1400 35 1 9.8157 4.3037 -1.9982 36 1 9.6095 4.4150 -3.8274 37 1 9.4451 6.9411 -3.6560 38 1 9.6512 6.8311 -1.8267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338459805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:09 Heat of formation + Delta-G solvation = 38.572376 kcal Electronic energy + Delta-G solvation = -22824.302086 eV Core-core repulsion = 19283.852495 eV Total energy + Delta-G solvation = -3540.449591 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.68298 -39.47515 -38.41128 -36.68772 -35.25425 -33.58726 -33.12057 -31.86788 -30.12234 -28.15262 -26.39275 -25.25842 -24.59176 -23.65338 -21.09352 -20.38394 -19.40275 -18.99950 -18.28335 -17.98595 -17.00894 -16.94672 -15.97171 -15.53608 -15.24072 -14.93058 -14.65938 -14.45054 -14.06622 -13.96815 -13.27221 -12.97106 -12.65295 -12.46181 -12.20684 -11.85384 -11.71089 -11.46206 -10.97427 -10.87036 -10.68106 -10.50498 -10.29355 -10.15895 -10.08629 -9.44775 -9.06338 -9.04680 -8.37849 -8.20143 -8.00920 -7.83548 -6.03662 -4.12478 0.52654 1.28541 1.38397 3.05947 3.23309 3.28534 3.34149 3.35822 3.52065 3.81877 4.24850 4.38851 4.56747 4.71993 4.81082 5.02725 5.19401 5.22610 5.28047 5.48218 5.53708 5.84032 6.03844 6.13989 6.30822 6.42396 6.53676 6.61698 6.77903 6.83106 6.97722 7.20626 7.39648 7.46156 7.47896 7.67431 7.83102 7.84273 8.39503 8.50514 8.88384 9.21914 9.53544 11.03326 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017147 B = 0.004115 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.547990 B = 6802.136548 C = 7735.893636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.311 6.311 3 C 0.574 3.426 4 N -0.589 5.589 5 C 0.179 3.821 6 C -0.283 4.283 7 C 0.490 3.510 8 N -0.647 5.647 9 C 0.680 3.320 10 O -0.598 6.598 11 N -0.696 5.696 12 C 0.173 3.827 13 C 0.018 3.982 14 C -0.494 4.494 15 H 0.057 0.943 16 C 0.073 3.927 17 N -0.876 5.876 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.214 4.214 23 C -0.133 4.133 24 N -0.586 5.586 25 H 0.428 0.572 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.173 0.827 30 H 0.164 0.836 31 H 0.400 0.600 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.261 0.739 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.598 -14.508 6.196 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.212 6.212 3 C 0.273 3.727 4 N -0.331 5.331 5 C 0.037 3.963 6 C -0.311 4.311 7 C 0.229 3.771 8 N -0.393 5.393 9 C 0.379 3.621 10 O -0.477 6.477 11 N -0.346 5.346 12 C 0.049 3.951 13 C 0.018 3.982 14 C -0.532 4.532 15 H 0.076 0.924 16 C -0.130 4.130 17 N -0.512 5.512 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.251 4.251 23 C -0.171 4.171 24 N -0.217 5.217 25 H 0.268 0.732 26 H 0.126 0.874 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.190 0.810 30 H 0.182 0.818 31 H 0.234 0.766 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.596 -14.257 6.802 20.842 hybrid contribution 0.028 0.160 -1.041 1.054 sum -13.568 -14.096 5.761 20.396 Atomic orbital electron populations 1.23494 0.72242 1.04024 1.04151 1.86265 1.25875 1.22537 1.86505 1.20242 0.79921 0.87011 0.85564 1.68228 1.35686 0.97527 1.31645 1.22219 0.92965 0.93300 0.87765 1.22555 0.94872 0.99757 1.13884 1.18038 0.89473 0.82294 0.87341 1.67760 1.06080 1.28602 1.36881 1.16676 0.81047 0.81261 0.83121 1.90924 1.67181 1.49607 1.39986 1.45516 1.51646 1.18310 1.19118 1.20995 0.95376 0.82388 0.96308 1.19059 0.86499 1.00098 0.92579 1.20300 1.27842 0.92298 1.12750 0.92450 1.24966 0.96047 0.95649 0.96387 1.70007 1.40247 0.97258 1.43728 0.86728 0.82076 0.77018 0.82574 1.20322 1.21220 1.20249 1.23067 1.05367 0.96533 1.00174 1.22444 1.02566 0.90880 1.01229 1.41827 1.04475 1.10449 1.64915 0.73210 0.87422 0.90725 0.90645 0.81007 0.81819 0.76642 0.91511 0.94601 0.92886 0.91805 0.90435 0.88896 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 10.47 101.05 1.06 1.30 16 2 O -0.31 -2.33 10.63 -16.31 -0.17 -2.50 16 3 C 0.57 5.74 8.60 -88.79 -0.76 4.98 16 4 N -0.59 -6.29 9.19 -14.57 -0.13 -6.42 16 5 C 0.18 2.08 11.18 -17.64 -0.20 1.88 16 6 C -0.28 -4.29 9.08 -39.35 -0.36 -4.65 16 7 C 0.49 7.58 7.66 -155.10 -1.19 6.39 16 8 N -0.65 -12.07 10.61 -15.95 -0.17 -12.23 16 9 C 0.68 14.92 6.89 -88.10 -0.61 14.32 16 10 O -0.60 -14.78 15.83 5.00 0.08 -14.70 16 11 N -0.70 -15.21 5.46 -65.51 -0.36 -15.56 16 12 C 0.17 4.14 5.51 -4.04 -0.02 4.12 16 13 C 0.02 0.45 1.60 -155.66 -0.25 0.20 16 14 C -0.49 -13.15 8.77 -34.44 -0.30 -13.46 16 15 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 16 C 0.07 1.97 5.41 -17.82 -0.10 1.88 16 17 N -0.88 -24.56 11.93 55.43 0.66 -23.90 16 18 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.21 -4.72 9.96 -26.69 -0.27 -4.98 16 23 C -0.13 -3.18 8.86 -26.69 -0.24 -3.42 16 24 N -0.59 -6.53 5.40 -13.41 -0.07 -6.60 16 25 H 0.43 3.79 8.94 -40.82 -0.36 3.42 16 26 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.07 0.31 8.11 -51.93 -0.42 -0.11 16 28 H 0.07 0.33 8.11 -51.93 -0.42 -0.09 16 29 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.16 2.92 6.37 -52.49 -0.33 2.59 16 31 H 0.40 8.31 8.56 -40.82 -0.35 7.96 16 32 H 0.07 1.77 8.13 -51.93 -0.42 1.34 16 33 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 34 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 37 H 0.09 2.39 7.65 -51.93 -0.40 1.99 16 38 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -33.44 334.61 -8.16 -41.60 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -4.79 Total: 10.86 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -3.23 Total: 8.56 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -0.07 Total: -64.72 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.09 Total: -17.21 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.44 -8.16 -41.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338459805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.175 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds