Wall clock time and date at job start Tue Mar 31 2020 02:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99956 * 2 1 4 4 C 1.38460 * 120.00191 * 179.97438 * 2 1 3 5 5 C 1.39394 * 119.53523 * 5.00655 * 4 2 1 6 6 C 1.36855 * 119.37892 * 179.97438 * 5 4 2 7 7 C 1.40356 * 118.49172 * 359.97438 * 6 5 4 8 8 C 1.47545 * 120.47441 * 180.02562 * 7 6 5 9 9 O 1.21587 * 120.00203 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99663 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99741 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47057 * 179.97438 * 11 10 8 13 13 O 1.21296 * 119.99864 * 0.02562 * 12 11 10 14 14 N 1.34768 * 120.00148 * 180.02562 * 12 11 10 15 15 C 1.37095 * 120.00352 * 180.02562 * 14 12 11 16 16 H 1.08001 * 119.99693 * 0.02562 * 15 14 12 17 17 C 1.38955 * 120.00285 * 179.97438 * 15 14 12 18 18 N 1.31411 * 119.99891 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99892 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46848 * 90.00231 * 19 17 15 21 21 H 1.48500 * 109.46949 * 209.99765 * 19 17 15 22 22 H 1.48493 * 109.47320 * 329.99951 * 19 17 15 23 23 C 1.39562 * 119.04834 * 359.97438 * 7 6 5 24 24 N 1.31679 * 120.51497 * 0.02562 * 23 7 6 25 25 H 1.09000 * 109.47086 * 270.00271 * 1 2 3 26 26 H 1.08998 * 109.46699 * 30.00069 * 1 2 3 27 27 H 1.08992 * 109.46791 * 150.00408 * 1 2 3 28 28 H 1.09001 * 109.47171 * 269.99834 * 3 2 1 29 29 H 1.09004 * 109.47653 * 29.99479 * 3 2 1 30 30 H 1.09006 * 109.47485 * 150.00037 * 3 2 1 31 31 H 1.08005 * 120.31365 * 359.97438 * 5 4 2 32 32 H 1.07999 * 120.75645 * 179.72505 * 6 5 4 33 33 H 0.96998 * 120.00209 * 359.97438 * 10 8 7 34 34 H 1.08995 * 109.47432 * 300.00643 * 11 10 8 35 35 H 1.09003 * 109.46565 * 60.00056 * 11 10 8 36 36 H 0.97009 * 119.99725 * 0.02562 * 14 12 11 37 37 H 0.96996 * 120.00299 * 179.97438 * 18 17 15 38 38 H 1.07995 * 119.73721 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1574 -1.1991 0.0005 5 6 1.4547 -2.3983 -0.1048 6 6 2.1423 -3.5816 -0.1044 7 6 3.5412 -3.5431 0.0023 8 6 4.3261 -4.7924 0.0065 9 8 3.7613 -5.8655 -0.0825 10 7 5.6690 -4.7442 0.1099 11 6 6.4483 -5.9848 0.1146 12 6 7.9139 -5.6569 0.2389 13 8 8.2722 -4.5006 0.3164 14 7 8.8265 -6.6482 0.2639 15 6 10.1598 -6.3500 0.3775 16 1 10.4788 -5.3205 0.4474 17 6 11.1007 -7.3722 0.4039 18 7 10.7124 -8.6248 0.3204 19 14 12.9173 -6.9657 0.5593 20 1 13.2929 -6.9194 1.9953 21 1 13.7187 -8.0096 -0.1285 22 1 13.1843 -5.6451 -0.0651 23 6 4.1793 -2.3060 0.1033 24 7 3.4796 -1.1904 0.0991 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3632 -0.8900 -0.5137 28 1 2.3792 1.5834 -1.0277 29 1 1.6084 2.0285 0.5138 30 1 3.1500 1.1384 0.5138 31 1 0.3777 -2.3938 -0.1859 32 1 1.6200 -4.5239 -0.1805 33 1 6.1196 -3.8882 0.1812 34 1 6.1412 -6.6036 0.9577 35 1 6.2750 -6.5261 -0.8154 36 1 8.5399 -7.5729 0.2016 37 1 11.3692 -9.3384 0.3384 38 1 5.2552 -2.2633 0.1863 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344154692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:48 Heat of formation + Delta-G solvation = -20.514359 kcal Electronic energy + Delta-G solvation = -21976.524878 eV Core-core repulsion = 18433.513093 eV Total energy + Delta-G solvation = -3543.011784 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72881 -39.24895 -38.05878 -36.66653 -34.48290 -33.70535 -32.69630 -31.41085 -30.91513 -28.61034 -27.77222 -25.80242 -24.38638 -23.48451 -22.17705 -20.28965 -19.61957 -18.35361 -17.92235 -17.32122 -16.85509 -15.71423 -15.63223 -15.22456 -15.18712 -15.11298 -14.62647 -14.42982 -13.99550 -13.99187 -13.57164 -13.31244 -13.10829 -12.99719 -12.72600 -12.47365 -12.21188 -12.14704 -11.92581 -11.62208 -11.11480 -10.44822 -10.31118 -10.25308 -10.04360 -9.98282 -9.62459 -9.43881 -8.80389 -8.62171 -8.09050 -7.84541 -6.50305 -3.92220 0.80671 1.21768 2.56914 3.03636 3.13015 3.22968 3.27541 3.40535 3.74880 3.91627 4.12686 4.21191 4.58962 4.73342 4.82103 4.88146 4.89922 4.95067 5.02234 5.11702 5.18353 5.24507 5.31226 5.50177 5.59088 5.77077 5.90817 5.98489 6.08068 6.12733 6.28078 6.54638 6.68463 6.99850 7.47329 7.81482 7.87569 7.93300 8.44006 8.48359 9.05782 9.40516 9.88339 10.66603 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.034032 B = 0.002617 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.550164 B =10697.916956 C =11493.549264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.612 5.612 3 C 0.095 3.905 4 C 0.417 3.583 5 C -0.250 4.250 6 C 0.025 3.975 7 C -0.246 4.246 8 C 0.567 3.433 9 O -0.552 6.552 10 N -0.704 5.704 11 C 0.110 3.890 12 C 0.428 3.572 13 O -0.597 6.597 14 N -0.549 5.549 15 C -0.304 4.304 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.895 5.895 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.269 1.269 23 C 0.192 3.808 24 N -0.545 5.545 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.409 0.591 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.736 13.973 -0.857 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.325 5.325 3 C -0.048 4.048 4 C 0.182 3.818 5 C -0.274 4.274 6 C -0.001 4.001 7 C -0.254 4.254 8 C 0.354 3.646 9 O -0.432 6.432 10 N -0.358 5.358 11 C -0.018 4.018 12 C 0.214 3.786 13 O -0.484 6.484 14 N -0.184 5.184 15 C -0.434 4.434 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.193 1.193 23 C 0.032 3.968 24 N -0.262 5.262 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.155 0.845 32 H 0.163 0.837 33 H 0.248 0.752 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -19.426 14.769 -0.804 24.416 hybrid contribution 0.560 -0.854 0.009 1.022 sum -18.866 13.915 -0.796 23.456 Atomic orbital electron populations 1.21775 0.78292 1.03269 1.01817 1.46182 1.05351 1.03367 1.77565 1.21636 0.97915 0.83668 1.01561 1.18526 0.88671 0.85963 0.88634 1.21132 1.01240 0.91485 1.13577 1.21140 0.92405 0.98508 0.88045 1.20622 0.95092 0.94422 1.15269 1.17870 0.81765 0.88428 0.76502 1.90748 1.70777 1.30430 1.51221 1.45606 1.05812 1.10780 1.73633 1.20964 0.90702 0.86787 1.03344 1.19743 0.86767 0.86502 0.85611 1.90495 1.80772 1.19830 1.57303 1.41794 1.06307 1.08068 1.62202 1.19733 0.80777 0.95175 1.47708 0.87649 1.25330 1.00933 0.94658 0.96837 1.69613 1.35740 0.98921 1.49220 0.85809 0.81378 0.78338 0.78485 1.20272 1.20819 1.19307 1.22801 0.99745 0.85991 0.88251 1.67238 1.05803 1.31384 1.21790 0.92669 0.90852 0.90765 0.93198 0.91787 0.89811 0.84505 0.83722 0.75216 0.89681 0.89690 0.77012 0.91597 0.81900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.27 59.85 0.61 1.09 16 2 N -0.61 -5.35 3.38 -189.70 -0.64 -6.00 16 3 C 0.10 0.71 10.49 59.85 0.63 1.34 16 4 C 0.42 4.75 7.36 -155.29 -1.14 3.61 16 5 C -0.25 -2.58 9.20 -39.65 -0.36 -2.94 16 6 C 0.03 0.30 9.65 -39.29 -0.38 -0.08 16 7 C -0.25 -3.44 5.89 -104.81 -0.62 -4.06 16 8 C 0.57 9.45 7.77 -12.46 -0.10 9.36 16 9 O -0.55 -10.60 16.41 5.29 0.09 -10.51 16 10 N -0.70 -12.05 5.48 -62.52 -0.34 -12.39 16 11 C 0.11 2.04 6.15 -5.19 -0.03 2.01 16 12 C 0.43 9.83 7.85 -10.99 -0.09 9.74 16 13 O -0.60 -15.23 15.24 5.54 0.08 -15.15 16 14 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 15 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 16 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 18 N -0.89 -23.94 13.05 55.50 0.72 -23.21 16 19 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 C 0.19 2.53 10.71 -17.12 -0.18 2.35 16 24 N -0.54 -7.09 9.04 -12.14 -0.11 -7.20 16 25 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 27 H 0.07 0.33 5.95 -51.93 -0.31 0.02 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.33 8.07 -51.93 -0.42 -0.09 16 30 H 0.08 0.75 7.28 -51.93 -0.38 0.38 16 31 H 0.14 1.01 5.99 -52.48 -0.31 0.69 16 32 H 0.15 1.63 7.73 -52.49 -0.41 1.23 16 33 H 0.41 6.78 5.49 -40.82 -0.22 6.55 16 34 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.16 1.98 6.41 -52.49 -0.34 1.65 16 LS Contribution 330.20 15.07 4.98 4.98 Total: -1.00 -32.85 330.20 -6.53 -39.38 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -4.33 Total: 13.67 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: -1.90 Total: 14.56 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.43 Total: -62.49 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: 0.17 Total: -25.66 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.85 -6.53 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344154692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.866 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds