Wall clock time and date at job start Tue Mar 31 2020 03:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.50701 * 109.46892 * 274.99996 * 3 2 1 5 5 H 1.08001 * 120.00365 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00124 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99899 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00292 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46788 * 120.00285 * 8 6 4 11 11 H 1.48495 * 109.47645 * 240.00017 * 8 6 4 12 12 S 1.65599 * 119.99727 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40241 * 156.45875 * 12 2 1 14 14 O 1.42096 * 106.40379 * 23.53497 * 12 2 1 15 15 N 1.65608 * 107.21718 * 269.99659 * 12 2 1 16 16 C 1.46494 * 119.99583 * 90.00246 * 15 12 2 17 17 C 1.53001 * 109.47275 * 95.00419 * 16 15 12 18 18 O 1.42891 * 109.47198 * 64.99460 * 17 16 15 19 19 C 1.46493 * 119.99916 * 269.72928 * 15 12 2 20 20 C 1.52997 * 109.47398 * 95.00006 * 19 15 12 21 21 C 1.53005 * 117.49989 * 243.61967 * 20 19 15 22 22 C 1.52997 * 60.00061 * 252.50806 * 21 20 19 23 23 H 1.09004 * 109.46955 * 270.00024 * 1 2 3 24 24 H 1.09003 * 109.47115 * 30.00071 * 1 2 3 25 25 H 1.08994 * 109.47486 * 150.00176 * 1 2 3 26 26 H 1.08997 * 109.47561 * 34.99712 * 3 2 1 27 27 H 1.09003 * 109.47156 * 155.00554 * 3 2 1 28 28 H 0.96993 * 119.99941 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.47101 * 215.00381 * 16 15 12 30 30 H 1.09001 * 109.47746 * 334.99625 * 16 15 12 31 31 H 1.09001 * 109.47362 * 184.99732 * 17 16 15 32 32 H 1.09001 * 109.46440 * 304.99124 * 17 16 15 33 33 H 0.96703 * 113.99838 * 179.97438 * 18 17 16 34 34 H 1.09004 * 109.46868 * 214.99641 * 19 15 12 35 35 H 1.09004 * 109.47439 * 334.99764 * 19 15 12 36 36 H 1.08997 * 115.54840 * 29.32534 * 20 19 15 37 37 H 1.09002 * 117.49693 * 0.02562 * 21 20 19 38 38 H 1.09000 * 117.49634 * 145.01940 * 21 20 19 39 39 H 1.09001 * 117.50089 * 252.51283 * 22 21 20 40 40 H 1.09003 * 117.50184 * 107.48619 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9289 1.1934 -2.2333 6 6 3.0006 2.9503 -1.6666 7 7 3.5042 3.6464 -0.6708 8 14 3.1796 3.5659 -3.4211 9 1 2.5310 2.6066 -4.3508 10 1 2.5289 4.8947 -3.5481 11 1 4.6206 3.6861 -3.7590 12 16 2.2929 -1.4342 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4112 -2.4063 -0.5454 15 7 2.5381 -1.8594 1.5810 16 6 1.5478 -2.6817 2.2803 17 6 1.9598 -4.1531 2.2020 18 8 3.1824 -4.3441 2.9167 19 6 3.7481 -1.4181 2.2790 20 6 3.4506 -0.1317 3.0520 21 6 4.2034 1.1333 2.6347 22 6 4.5595 0.4284 3.9451 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3634 -0.8899 -0.5138 26 1 1.6502 2.0043 0.5894 27 1 3.1858 1.1177 0.4342 28 1 3.9683 4.4796 -0.8475 29 1 1.4930 -2.3749 3.3248 30 1 0.5720 -2.5522 1.8121 31 1 1.1798 -4.7730 2.6441 32 1 2.1008 -4.4358 1.1587 33 1 3.5038 -5.2561 2.9095 34 1 4.0697 -2.1936 2.9743 35 1 4.5389 -1.2308 1.5525 36 1 2.4222 -0.0159 3.3940 37 1 4.9103 1.0491 1.8093 38 1 3.6702 2.0816 2.7022 39 1 4.2605 0.9128 4.8746 40 1 5.5010 -0.1197 3.9821 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352282851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:51 Heat of formation + Delta-G solvation = -95.547504 kcal Electronic energy + Delta-G solvation = -23521.854354 eV Core-core repulsion = 20078.740089 eV Total energy + Delta-G solvation = -3443.114265 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.01351 -37.02424 -36.41071 -35.39998 -35.11339 -34.57813 -32.38650 -29.46497 -27.72288 -25.81202 -24.99098 -22.54736 -22.34011 -21.76300 -20.19979 -18.42413 -17.70007 -17.00550 -16.72922 -16.31931 -16.11078 -15.16394 -14.97257 -14.47075 -14.10271 -13.74135 -13.51772 -13.40216 -13.17854 -12.68984 -12.44412 -12.22855 -12.09577 -11.72200 -11.53415 -11.49231 -11.18487 -11.09023 -11.07167 -11.02962 -10.98775 -10.65983 -10.47614 -10.05333 -9.99498 -9.94520 -9.71625 -9.45511 -8.75528 -8.39621 -7.97495 -6.02609 -4.05531 1.24760 3.32566 3.40335 3.45154 3.49414 4.07352 4.20213 4.27961 4.47716 4.93303 4.99535 5.08290 5.20644 5.29776 5.31638 5.34888 5.41567 5.48794 5.67753 5.71175 5.83531 5.89587 5.98150 6.01848 6.15184 6.27079 6.38826 6.54880 6.58510 6.61848 6.70521 6.90782 7.33043 7.50009 7.56827 7.68877 7.95323 8.26562 8.96529 9.58937 11.05590 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018948 B = 0.006414 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.405111 B = 4364.335818 C = 5195.698762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.995 5.995 3 C 0.255 3.745 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.778 3.222 13 O -0.962 6.962 14 O -1.001 7.001 15 N -1.001 6.001 16 C 0.129 3.871 17 C 0.056 3.944 18 O -0.567 6.567 19 C 0.151 3.849 20 C -0.178 4.178 21 C -0.161 4.161 22 C -0.182 4.182 23 H 0.037 0.963 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.030 0.970 27 H 0.050 0.950 28 H 0.262 0.738 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.374 0.626 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 -11.666 10.321 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.838 5.838 3 C 0.133 3.867 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.787 3.213 13 O -0.946 6.946 14 O -0.985 6.985 15 N -0.837 5.837 16 C 0.002 3.998 17 C -0.023 4.023 18 O -0.372 6.372 19 C 0.026 3.974 20 C -0.198 4.198 21 C -0.198 4.198 22 C -0.220 4.220 23 H 0.055 0.945 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.220 0.780 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.822 -11.339 9.697 15.185 hybrid contribution -0.087 0.152 -0.690 0.712 sum -2.909 -11.188 9.007 14.654 Atomic orbital electron populations 1.21333 0.80480 1.03327 1.00009 1.57652 1.14086 1.23483 1.88547 1.19166 0.91588 0.78598 0.97336 1.21567 1.35862 1.06239 0.93121 0.92381 1.24895 0.95217 0.96521 0.97274 1.69921 1.37402 1.15275 1.30658 0.86510 0.77968 0.78469 0.84904 1.19745 1.21033 1.20831 1.02100 0.73460 0.72826 0.72959 1.93602 1.40472 1.84879 1.75611 1.93498 1.67531 1.60539 1.76930 1.58093 1.29239 1.64047 1.32371 1.21193 0.91057 0.88365 0.99136 1.22744 0.86288 0.97348 0.95936 1.86501 1.41042 1.33080 1.76580 1.20941 0.85844 0.94244 0.96393 1.22807 0.97362 0.95819 1.03783 1.23128 1.03059 0.96322 0.97327 1.22901 0.99179 1.04783 0.95145 0.94472 0.90475 0.91782 0.95156 0.93217 0.92863 0.89979 0.89164 0.92970 0.92961 0.77967 0.89042 0.89365 0.87957 0.88027 0.88186 0.89367 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.65 10.68 59.85 0.64 2.29 16 2 N -1.00 -20.97 3.23 -123.05 -0.40 -21.37 16 3 C 0.25 6.34 5.08 -5.19 -0.03 6.31 16 4 C -0.53 -14.90 9.38 -34.44 -0.32 -15.22 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 8 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 S 2.78 56.87 6.02 -107.50 -0.65 56.22 16 13 O -0.96 -23.49 15.66 -57.17 -0.90 -24.39 16 14 O -1.00 -20.84 15.71 -57.17 -0.90 -21.74 16 15 N -1.00 -16.08 2.83 -114.39 -0.32 -16.40 16 16 C 0.13 1.63 5.80 -4.04 -0.02 1.61 16 17 C 0.06 0.63 7.39 37.16 0.27 0.91 16 18 O -0.57 -6.21 11.96 -35.23 -0.42 -6.64 16 19 C 0.15 2.37 5.80 -4.05 -0.02 2.35 16 20 C -0.18 -2.70 6.01 -90.62 -0.54 -3.25 16 21 C -0.16 -2.76 8.28 -26.73 -0.22 -2.98 16 22 C -0.18 -2.48 10.25 -26.73 -0.27 -2.75 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 25 H 0.06 1.05 7.02 -51.93 -0.36 0.68 16 26 H 0.03 0.77 8.11 -51.93 -0.42 0.35 16 27 H 0.05 1.28 5.31 -51.93 -0.28 1.00 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 30 H 0.09 1.06 7.61 -51.93 -0.40 0.67 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.37 2.44 9.12 45.56 0.42 2.85 16 34 H 0.09 1.30 6.58 -51.93 -0.34 0.96 16 35 H 0.09 1.55 6.65 -51.93 -0.35 1.21 16 36 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.10 1.95 7.82 -51.93 -0.41 1.54 16 38 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 341.18 15.07 5.14 5.14 Total: -1.00 -33.56 341.18 -8.82 -42.39 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.48 Total: 3.79 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -0.62 Total: -9.05 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 0.02 Total: -62.64 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -2.21 Total: -52.76 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 56.87 SS G_CDS: -0.65 Total: 56.22 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.56 -8.82 -42.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352282851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.160 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds