Wall clock time and date at job start Tue Mar 31 2020 03:01:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46502 * 120.00062 * 2 1
4 4 C 1.50695 * 109.47115 * 84.99992 * 3 2 1
5 5 H 1.07995 * 120.00143 * 0.02562 * 4 3 2
6 6 C 1.37877 * 119.99827 * 179.97438 * 4 3 2
7 7 N 1.31512 * 119.99998 * 0.02562 * 6 4 3
8 8 Si 1.86803 * 119.99994 * 180.02562 * 6 4 3
9 9 H 1.48496 * 109.47037 * 0.02562 * 8 6 4
10 10 H 1.48503 * 109.47150 * 120.00254 * 8 6 4
11 11 H 1.48499 * 109.47304 * 240.00318 * 8 6 4
12 12 S 1.65606 * 120.00003 * 180.02562 * 2 1 3
13 13 O 1.42098 * 106.40010 * 203.53824 * 12 2 1
14 14 O 1.42094 * 106.39890 * 336.45188 * 12 2 1
15 15 N 1.65596 * 107.21969 * 89.99706 * 12 2 1
16 16 C 1.46495 * 120.00156 * 89.99975 * 15 12 2
17 17 C 1.46502 * 119.99713 * 269.99848 * 15 12 2
18 18 H 1.08994 * 109.52358 * 359.87790 * 17 15 12
19 19 C 1.53174 * 109.52131 * 239.68782 * 17 15 12
20 20 C 1.53173 * 109.03607 * 183.11743 * 19 17 15
21 21 C 1.53097 * 109.16762 * 56.97933 * 20 19 17
22 22 O 1.42903 * 109.40981 * 302.39368 * 21 20 19
23 23 C 1.42905 * 114.09763 * 61.15796 * 22 21 20
24 24 H 1.09002 * 109.47391 * 89.99876 * 1 2 3
25 25 H 1.09001 * 109.46813 * 329.99933 * 1 2 3
26 26 H 1.09004 * 109.47041 * 210.00060 * 1 2 3
27 27 H 1.08999 * 109.47026 * 205.00489 * 3 2 1
28 28 H 1.09005 * 109.46953 * 325.00115 * 3 2 1
29 29 H 0.97008 * 119.99992 * 179.97438 * 7 6 4
30 30 H 1.09006 * 109.47014 * 89.99927 * 16 15 12
31 31 H 1.09002 * 109.47259 * 209.99691 * 16 15 12
32 32 H 1.09002 * 109.47274 * 330.00413 * 16 15 12
33 33 H 1.09004 * 109.54583 * 302.97985 * 19 17 15
34 34 H 1.08994 * 109.54885 * 63.24600 * 19 17 15
35 35 H 1.09004 * 109.52248 * 297.07098 * 20 19 17
36 36 H 1.09001 * 109.57574 * 176.91287 * 20 19 17
37 37 H 1.08993 * 109.48457 * 182.40816 * 21 20 19
38 38 H 1.09002 * 109.47554 * 62.37173 * 21 20 19
39 39 H 1.09001 * 109.47714 * 178.85859 * 23 22 21
40 40 H 1.09000 * 109.49058 * 58.82845 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.3414 1.7657 1.4154
5 1 1.9289 1.1935 2.2331
6 6 3.0007 2.9503 1.6663
7 7 3.5034 3.6468 0.6705
8 14 3.1797 3.5660 3.4209
9 1 2.5322 2.6062 4.3508
10 1 4.6208 3.6862 3.7587
11 1 2.5290 4.8948 3.5481
12 16 2.2930 -1.4342 -0.0006
13 8 3.5759 -1.1570 0.5439
14 8 1.4114 -2.4067 0.5435
15 7 2.5381 -1.8581 -1.5826
16 6 3.7451 -1.4112 -2.2821
17 6 1.5477 -2.6800 -2.2825
18 1 0.7260 -2.9152 -1.6060
19 6 2.2058 -3.9776 -2.7613
20 6 1.1823 -4.7924 -3.5581
21 6 0.6586 -3.9436 -4.7196
22 8 0.0873 -2.7382 -4.2071
23 6 1.0099 -1.9127 -3.4932
24 1 -0.3634 0.0000 -1.0277
25 1 -0.3633 0.8900 0.5139
26 1 -0.3633 -0.8900 0.5139
27 1 3.1857 1.1177 -0.4344
28 1 1.6501 2.0043 -0.5895
29 1 3.9669 4.4805 0.8471
30 1 4.5354 -2.1507 -2.1517
31 1 3.5278 -1.2951 -3.3439
32 1 4.0705 -0.4555 -1.8711
33 1 3.0584 -3.7408 -3.3978
34 1 2.5414 -4.5556 -1.9003
35 1 0.3531 -5.0714 -2.9079
36 1 1.6569 -5.6922 -3.9496
37 1 -0.1015 -4.5030 -5.2648
38 1 1.4817 -3.6990 -5.3910
39 1 0.5028 -1.0092 -3.1549
40 1 1.8376 -1.6414 -4.1486
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000352286916.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:01:32
Heat of formation + Delta-G solvation = -119.644364 kcal
Electronic energy + Delta-G solvation = -23278.450928 eV
Core-core repulsion = 19834.291744 eV
Total energy + Delta-G solvation = -3444.159184 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 292.129 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.65730 -36.69244 -36.09339 -35.49150 -35.16661 -32.97609 -32.44020 -30.04306
-27.78333 -26.27954 -25.18799 -25.06429 -23.05532 -22.24070 -20.15710 -18.58404
-17.45043 -16.79733 -16.65189 -16.36708 -16.05268 -15.67338 -15.00200 -14.74478
-14.32698 -14.09832 -13.56341 -13.37044 -13.27456 -13.18801 -12.79007 -12.39286
-12.30386 -12.15532 -11.82926 -11.66347 -11.55172 -11.37526 -11.18490 -11.14655
-11.09435 -10.81455 -10.70564 -10.59998 -10.52023 -10.05251 -9.83432 -9.73160
-8.80708 -8.45383 -8.06086 -6.07904 -4.11676 1.14194 3.30491 3.33140
3.38166 3.44043 3.78982 4.06246 4.43962 4.55695 4.65809 4.71038
4.74625 4.94019 5.04224 5.19793 5.23381 5.27407 5.43245 5.49500
5.58586 5.61978 5.63734 5.71126 5.78652 5.90122 5.96114 6.01873
6.05586 6.19829 6.33378 6.50810 6.70421 7.05065 7.20500 7.38751
7.59180 7.89982 8.19106 8.91112 9.53798 11.00691
Molecular weight = 292.13amu
Principal moments of inertia in cm(-1)
A = 0.030926 B = 0.004662 C = 0.004588
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 905.168201 B = 6005.114262 C = 6101.654558
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.095 3.905
2 N -0.996 5.996
3 C 0.257 3.743
4 C -0.528 4.528
5 H 0.060 0.940
6 C 0.062 3.938
7 N -0.896 5.896
8 Si 0.897 3.103
9 H -0.272 1.272
10 H -0.282 1.282
11 H -0.283 1.283
12 S 2.778 3.222
13 O -0.959 6.959
14 O -0.995 6.995
15 N -1.008 6.008
16 C 0.093 3.907
17 C 0.117 3.883
18 H 0.106 0.894
19 C -0.130 4.130
20 C -0.154 4.154
21 C 0.057 3.943
22 O -0.378 6.378
23 C 0.051 3.949
24 H 0.038 0.962
25 H 0.078 0.922
26 H 0.065 0.935
27 H 0.036 0.964
28 H 0.035 0.965
29 H 0.263 0.737
30 H 0.054 0.946
31 H 0.066 0.934
32 H 0.079 0.921
33 H 0.069 0.931
34 H 0.073 0.927
35 H 0.075 0.925
36 H 0.075 0.925
37 H 0.094 0.906
38 H 0.050 0.950
39 H 0.101 0.899
40 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.113 -13.160 -11.807 18.152
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.052 4.052
2 N -0.839 5.839
3 C 0.135 3.865
4 C -0.568 4.568
5 H 0.079 0.921
6 C -0.140 4.140
7 N -0.535 5.535
8 Si 0.724 3.276
9 H -0.196 1.196
10 H -0.208 1.208
11 H -0.209 1.209
12 S 2.787 3.213
13 O -0.943 6.943
14 O -0.979 6.979
15 N -0.847 5.847
16 C -0.053 4.053
17 C 0.010 3.990
18 H 0.124 0.876
19 C -0.169 4.169
20 C -0.193 4.193
21 C -0.019 4.019
22 O -0.296 6.296
23 C -0.027 4.027
24 H 0.057 0.943
25 H 0.097 0.903
26 H 0.084 0.916
27 H 0.054 0.946
28 H 0.053 0.947
29 H 0.073 0.927
30 H 0.072 0.928
31 H 0.085 0.915
32 H 0.098 0.902
33 H 0.088 0.912
34 H 0.092 0.908
35 H 0.094 0.906
36 H 0.094 0.906
37 H 0.112 0.888
38 H 0.068 0.932
39 H 0.119 0.881
40 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -3.912 -13.412 -11.121 17.857
hybrid contribution 0.424 0.634 0.613 0.978
sum -3.488 -12.778 -10.509 16.908
Atomic orbital electron populations
1.21356 0.80112 1.03484 1.00218 1.57683 1.14356 1.23327 1.88505
1.19065 0.90867 0.78834 0.97726 1.21531 1.35992 1.06305 0.92947
0.92136 1.24925 0.95081 0.96479 0.97500 1.69925 1.37405 1.15310
1.30872 0.86459 0.78005 0.78511 0.84589 1.19633 1.20789 1.20940
1.02136 0.73521 0.72843 0.72766 1.93627 1.40442 1.84851 1.75342
1.93509 1.67415 1.60442 1.76520 1.58264 1.28875 1.64787 1.32737
1.21442 0.85729 1.00391 0.97735 1.21444 0.91428 0.90651 0.95504
0.87618 1.21940 0.98423 0.95901 1.00628 1.22216 0.99765 0.98976
0.98339 1.22617 0.98578 0.85884 0.94869 1.87969 1.36641 1.32857
1.72128 1.22995 0.93557 0.93667 0.92479 0.94293 0.90335 0.91631
0.94577 0.94703 0.92741 0.92782 0.91537 0.90197 0.91203 0.90848
0.90628 0.90602 0.88832 0.93188 0.88124 0.92461
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.64 10.68 59.85 0.64 2.28 16
2 N -1.00 -20.63 3.23 -123.05 -0.40 -21.03 16
3 C 0.26 6.36 5.08 -5.19 -0.03 6.34 16
4 C -0.53 -14.81 9.38 -34.44 -0.32 -15.13 16
5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16
6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16
7 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16
8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16
9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16
12 S 2.78 55.55 6.01 -107.50 -0.65 54.91 16
13 O -0.96 -22.88 16.18 -57.18 -0.93 -23.80 16
14 O -0.99 -20.75 15.31 -57.18 -0.88 -21.62 16
15 N -1.01 -15.34 3.14 -114.46 -0.36 -15.69 16
16 C 0.09 1.24 9.29 59.84 0.56 1.79 16
17 C 0.12 1.52 2.71 -67.79 -0.18 1.34 16
18 H 0.11 1.51 6.91 -51.93 -0.36 1.15 16
19 C -0.13 -1.40 5.35 -26.55 -0.14 -1.54 16
20 C -0.15 -1.36 6.14 -26.59 -0.16 -1.52 16
21 C 0.06 0.51 6.84 37.21 0.25 0.76 16
22 O -0.38 -4.49 10.77 -35.23 -0.38 -4.87 16
23 C 0.05 0.61 6.15 37.20 0.23 0.83 16
24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
25 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16
26 H 0.07 1.08 7.02 -51.93 -0.36 0.72 16
27 H 0.04 0.94 7.26 -51.93 -0.38 0.56 16
28 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16
29 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16
30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16
31 H 0.07 0.70 6.39 -51.93 -0.33 0.37 16
32 H 0.08 1.22 7.44 -51.93 -0.39 0.83 16
33 H 0.07 0.68 7.58 -51.93 -0.39 0.28 16
34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16
36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
37 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16
38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
39 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16
40 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16
LS Contribution 332.46 15.07 5.01 5.01
Total: -1.00 -33.22 332.46 -8.43 -41.65
By element:
Atomic # 1 Polarization: 3.32 SS G_CDS: -6.32 Total: -3.00 kcal
Atomic # 6 Polarization: -3.93 SS G_CDS: 0.74 Total: -3.19 kcal
Atomic # 7 Polarization: -61.88 SS G_CDS: -0.02 Total: -61.90 kcal
Atomic # 8 Polarization: -48.11 SS G_CDS: -2.18 Total: -50.29 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal
Atomic # 16 Polarization: 55.55 SS G_CDS: -0.65 Total: 54.91 kcal
Total LS contribution 5.01 Total: 5.01 kcal
Total: -33.22 -8.43 -41.65 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000352286916.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -77.993 kcal
(2) G-P(sol) polarization free energy of solvation -33.217 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.210 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.644 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds