Wall clock time and date at job start Tue Mar 31 2020 03:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46498 * 119.99829 * 2 1 4 4 C 1.50702 * 109.47337 * 275.00322 * 3 2 1 5 5 H 1.07993 * 119.99743 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99810 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00175 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99815 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47590 * 59.99206 * 8 6 4 10 10 H 1.48501 * 109.47166 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46897 * 299.99465 * 8 6 4 12 12 S 1.65600 * 120.00489 * 180.02562 * 2 1 3 13 13 O 1.42095 * 106.40646 * 156.45644 * 12 2 1 14 14 O 1.42106 * 106.39844 * 23.53517 * 12 2 1 15 15 N 1.65603 * 107.21655 * 270.00139 * 12 2 1 16 16 C 1.46499 * 119.99676 * 269.99668 * 15 12 2 17 17 C 1.46502 * 120.00242 * 89.99796 * 15 12 2 18 18 H 1.09004 * 110.53761 * 9.68832 * 17 15 12 19 19 C 1.54879 * 110.48646 * 132.30517 * 17 15 12 20 20 C 1.54889 * 102.74929 * 156.62259 * 19 17 15 21 21 C 1.54265 * 104.19193 * 322.05316 * 20 19 17 22 22 C 1.53868 * 106.60077 * 23.61168 * 21 20 19 23 23 H 1.09004 * 110.03188 * 119.27855 * 22 21 20 24 24 O 1.42896 * 110.03649 * 240.66432 * 22 21 20 25 25 H 1.09005 * 109.47379 * 269.99592 * 1 2 3 26 26 H 1.08995 * 109.47568 * 29.99770 * 1 2 3 27 27 H 1.09002 * 109.47138 * 149.99911 * 1 2 3 28 28 H 1.09005 * 109.47091 * 35.00331 * 3 2 1 29 29 H 1.09005 * 109.47277 * 155.00296 * 3 2 1 30 30 H 0.96998 * 119.99923 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46953 * 275.21836 * 16 15 12 32 32 H 1.08998 * 109.47412 * 35.21641 * 16 15 12 33 33 H 1.09005 * 109.47273 * 155.21767 * 16 15 12 34 34 H 1.08999 * 110.75938 * 38.30128 * 19 17 15 35 35 H 1.09007 * 110.91414 * 275.00716 * 19 17 15 36 36 H 1.09010 * 110.48567 * 203.37901 * 20 19 17 37 37 H 1.08995 * 110.48841 * 80.73082 * 20 19 17 38 38 H 1.09003 * 110.03574 * 264.32405 * 21 20 19 39 39 H 1.09005 * 110.03021 * 142.89495 * 21 20 19 40 40 H 0.96697 * 113.99893 * 297.91390 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3412 1.7658 -1.4154 5 1 1.9287 1.1936 -2.2331 6 6 3.0005 2.9505 -1.6663 7 7 3.5032 3.6470 -0.6705 8 14 3.1782 3.5670 -3.4207 9 1 1.8316 3.7734 -4.0117 10 1 3.9207 4.8530 -3.4207 11 1 3.9231 2.5648 -4.2244 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5450 14 8 1.4113 -2.4063 -0.5454 15 7 2.5381 -1.8593 1.5810 16 6 3.7453 -1.4129 2.2808 17 6 1.5478 -2.6818 2.2804 18 1 0.8067 -3.0664 1.5796 19 6 2.2420 -3.8465 3.0289 20 6 1.2184 -4.1991 4.1367 21 6 0.6536 -2.8332 4.5784 22 6 0.8630 -1.8684 3.3981 23 1 -0.0982 -1.4906 3.0496 24 8 1.7003 -0.7813 3.7970 25 1 -0.3634 -0.0001 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6500 2.0043 0.5895 29 1 3.1857 1.1177 0.4343 30 1 3.9667 4.4807 -0.8470 31 1 4.5619 -2.1045 2.0738 32 1 4.0175 -0.4155 1.9357 33 1 3.5546 -1.3866 3.3537 34 1 3.1853 -3.5178 3.4650 35 1 2.4005 -4.6963 2.3649 36 1 1.7149 -4.6945 4.9712 37 1 0.4241 -4.8287 3.7358 38 1 1.1913 -2.4726 5.4553 39 1 -0.4093 -2.9235 4.8027 40 1 1.3290 -0.2384 4.5058 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352602857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:13 Heat of formation + Delta-G solvation = -146.894999 kcal Electronic energy + Delta-G solvation = -23567.094393 eV Core-core repulsion = 20121.753533 eV Total energy + Delta-G solvation = -3445.340860 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.19226 -38.33372 -37.19678 -36.86449 -36.22568 -35.10599 -34.50235 -29.69956 -29.09380 -28.68367 -26.80994 -26.31401 -24.16182 -21.55477 -21.34603 -19.94122 -19.20917 -18.49713 -18.33918 -17.65947 -17.36893 -16.73732 -16.25673 -15.77323 -15.38486 -15.16912 -14.96521 -14.57718 -14.50331 -14.05195 -13.95134 -13.70207 -13.56293 -13.32390 -13.19373 -13.04941 -12.94427 -12.72302 -12.49841 -12.45238 -12.39967 -12.08802 -12.00388 -11.98467 -11.87261 -11.76635 -11.30647 -10.70242 -10.59695 -9.85244 -9.71557 -8.20187 -6.32779 -0.33368 1.38049 1.42061 1.49238 2.01812 2.39342 2.56630 3.09888 3.34471 3.42742 3.56940 3.70061 4.05083 4.08321 4.18736 4.42083 4.47266 4.53203 4.59815 4.68527 4.73929 4.80437 4.85381 4.92770 5.03383 5.05486 5.15913 5.19031 5.22478 5.24693 5.35766 5.44987 5.49752 5.67064 5.72408 5.98805 6.11047 6.75052 7.05258 7.35840 8.87046 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.028306 B = 0.005161 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.967940 B = 5424.134403 C = 5622.651932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.001 6.001 3 C 0.280 3.720 4 C -0.553 4.553 5 H 0.049 0.951 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.263 1.263 10 H -0.274 1.274 11 H -0.278 1.278 12 S 2.788 3.212 13 O -1.011 7.011 14 O -1.009 7.009 15 N -0.983 5.983 16 C 0.107 3.893 17 C 0.133 3.867 18 H 0.105 0.895 19 C -0.131 4.131 20 C -0.115 4.115 21 C -0.146 4.146 22 C 0.085 3.915 23 H 0.062 0.938 24 O -0.563 6.563 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.025 0.975 29 H 0.012 0.988 30 H 0.268 0.732 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.439 -13.046 14.192 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.842 5.842 3 C 0.156 3.844 4 C -0.592 4.592 5 H 0.068 0.932 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.187 1.187 10 H -0.199 1.199 11 H -0.204 1.204 12 S 2.798 3.202 13 O -0.995 6.995 14 O -0.993 6.993 15 N -0.823 5.823 16 C -0.038 4.038 17 C 0.026 3.974 18 H 0.123 0.877 19 C -0.170 4.170 20 C -0.153 4.153 21 C -0.184 4.184 22 C 0.024 3.976 23 H 0.080 0.920 24 O -0.371 6.371 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.030 0.970 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.131 0.869 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -6.679 -13.581 12.998 19.950 hybrid contribution -0.108 1.134 -0.383 1.202 sum -6.787 -12.447 12.616 18.978 Atomic orbital electron populations 1.21504 0.78345 1.03346 1.02085 1.57519 1.15550 1.21969 1.89200 1.18509 0.90092 0.80187 0.95582 1.21819 1.36496 1.06752 0.94143 0.93239 1.25748 0.94675 0.96672 1.01543 1.70008 1.37688 1.15696 1.32839 0.85641 0.78858 0.77600 0.79811 1.18750 1.19878 1.20400 1.01511 0.72321 0.72495 0.73885 1.93547 1.42764 1.85472 1.77686 1.93466 1.67498 1.60451 1.77922 1.57467 1.29986 1.64331 1.30494 1.21465 0.84342 0.97642 1.00337 1.22241 0.90399 0.90987 0.93763 0.87719 1.22858 0.99751 0.96518 0.97872 1.22264 0.98149 0.97002 0.97933 1.22848 1.02571 0.95269 0.97679 1.22864 0.92755 0.87641 0.94292 0.91966 1.86627 1.47412 1.43567 1.59465 0.91357 0.91214 0.90857 0.95730 0.97033 0.92325 0.93257 0.94250 0.86871 0.90362 0.91045 0.89779 0.90363 0.89852 0.89612 0.76457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.25 10.68 127.77 1.36 4.61 16 2 N -1.00 -43.94 3.23 -543.23 -1.75 -45.69 16 3 C 0.28 14.89 5.08 85.63 0.43 15.32 16 4 C -0.55 -32.51 9.38 25.60 0.24 -32.27 16 5 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 6 C 0.01 0.77 5.46 84.66 0.46 1.23 16 7 N -0.92 -55.30 13.29 21.45 0.28 -55.01 16 8 Si 0.96 45.65 29.54 68.60 2.03 47.67 16 9 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 12 S 2.79 119.34 6.04 -56.49 -0.34 119.00 16 13 O -1.01 -52.78 16.29 -128.00 -2.08 -54.87 16 14 O -1.01 -43.26 15.28 -128.00 -1.96 -45.21 16 15 N -0.98 -32.25 3.02 -510.91 -1.54 -33.79 16 16 C 0.11 3.36 8.06 127.77 1.03 4.39 16 17 C 0.13 3.31 3.28 46.06 0.15 3.46 16 18 H 0.10 2.71 6.90 -2.38 -0.02 2.69 16 19 C -0.13 -2.55 6.35 31.88 0.20 -2.35 16 20 C -0.12 -1.53 6.83 31.67 0.22 -1.31 16 21 C -0.15 -1.86 6.60 31.32 0.21 -1.65 16 22 C 0.09 1.65 4.20 31.32 0.13 1.79 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 24 O -0.56 -12.05 9.62 -148.98 -1.43 -13.48 16 25 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 27 H 0.07 2.40 7.02 -2.39 -0.02 2.39 16 28 H 0.02 1.33 8.11 -2.38 -0.02 1.31 16 29 H 0.01 0.67 7.24 -2.38 -0.02 0.66 16 30 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.04 1.46 7.61 -2.39 -0.02 1.44 16 33 H 0.11 2.96 5.50 -2.38 -0.01 2.94 16 34 H 0.08 1.55 6.68 -2.39 -0.02 1.53 16 35 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.96 7.96 -2.39 -0.02 0.94 16 39 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.39 5.23 9.11 -74.06 -0.67 4.55 16 Total: -1.00 -75.21 330.84 -2.00 -77.21 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.36 Total: 10.96 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 4.44 Total: -6.78 kcal Atomic # 7 Polarization: -131.48 SS G_CDS: -3.01 Total: -134.49 kcal Atomic # 8 Polarization: -108.09 SS G_CDS: -5.47 Total: -113.56 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: 119.34 SS G_CDS: -0.34 Total: 119.00 kcal Total: -75.21 -2.00 -77.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352602857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.689 kcal (2) G-P(sol) polarization free energy of solvation -75.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds