Wall clock time and date at job start Tue Mar 31 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47897 * 111.00314 * 2 1 4 4 C 1.53991 * 107.05735 * 145.84362 * 3 2 1 5 5 C 1.54592 * 105.14297 * 358.77263 * 4 3 2 6 6 O 1.42904 * 110.72402 * 96.57611 * 5 4 3 7 7 C 1.53002 * 110.72815 * 219.68250 * 5 4 3 8 8 N 1.46494 * 109.47113 * 177.54764 * 7 5 4 9 9 S 1.65608 * 119.99583 * 165.00333 * 8 7 5 10 10 O 1.42102 * 104.27529 * 181.07038 * 9 8 7 11 11 O 1.42093 * 104.27575 * 308.92948 * 9 8 7 12 12 C 1.81397 * 104.44943 * 65.00070 * 9 8 7 13 13 C 1.52996 * 109.47172 * 179.97438 * 12 9 8 14 14 C 1.50702 * 109.47624 * 179.97438 * 13 12 9 15 15 H 1.08002 * 119.99509 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00407 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99811 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99892 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47305 * 90.00296 * 18 16 14 20 20 H 1.48506 * 109.47211 * 209.99880 * 18 16 14 21 21 H 1.48501 * 109.47320 * 329.99700 * 18 16 14 22 22 C 1.48740 * 111.04152 * 117.57609 * 2 1 3 23 23 H 1.08999 * 109.46811 * 59.87163 * 1 2 3 24 24 H 1.09002 * 109.47756 * 179.87653 * 1 2 3 25 25 H 1.09004 * 109.47541 * 299.87673 * 1 2 3 26 26 H 1.08996 * 109.92079 * 26.48862 * 3 2 1 27 27 H 1.09003 * 110.08081 * 265.28677 * 3 2 1 28 28 H 1.09006 * 110.31098 * 239.85438 * 4 3 2 29 29 H 1.09000 * 110.39544 * 117.73269 * 4 3 2 30 30 H 0.96696 * 113.99915 * 182.44738 * 6 5 4 31 31 H 1.09005 * 109.46728 * 57.54590 * 7 5 4 32 32 H 1.09001 * 109.46942 * 297.55531 * 7 5 4 33 33 H 0.96995 * 120.00292 * 345.27796 * 8 7 5 34 34 H 1.09002 * 109.47515 * 299.99988 * 12 9 8 35 35 H 1.08999 * 109.47173 * 59.99866 * 12 9 8 36 36 H 1.09002 * 109.47161 * 299.99950 * 13 12 9 37 37 H 1.08999 * 109.46961 * 60.00006 * 13 12 9 38 38 H 0.97004 * 119.99866 * 180.02562 * 17 16 14 39 39 H 1.08997 * 110.83391 * 81.95837 * 22 2 1 40 40 H 1.08998 * 110.58370 * 318.76901 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 3.2982 1.3658 0.8266 5 6 3.4491 -0.0930 1.3155 6 8 4.3206 -0.8277 0.4536 7 6 3.9588 -0.1309 2.7576 8 7 4.0358 -1.5214 3.2120 9 16 4.8923 -1.8999 4.5779 10 8 4.7671 -3.3110 4.6902 11 8 6.1600 -1.2906 4.3766 12 6 3.9941 -1.0724 5.9192 13 6 4.6956 -1.3503 7.2501 14 6 3.9499 -0.6623 8.3644 15 1 3.0638 -0.0850 8.1452 16 6 4.3987 -0.7699 9.6636 17 7 5.4779 -1.4725 9.9304 18 14 3.4738 0.0823 11.0448 19 1 2.4405 -0.8353 11.5885 20 1 4.4252 0.4512 12.1238 21 1 2.8206 1.3084 10.5203 22 6 2.0030 -0.6426 1.2305 23 1 -0.3633 0.5158 -0.8888 24 1 -0.3635 -1.0276 -0.0022 25 1 -0.3634 0.5119 0.8911 26 1 1.2759 2.0561 0.4571 27 1 2.2117 1.6999 -1.0203 28 1 3.2137 2.0428 1.6766 29 1 4.1479 1.6458 0.2038 30 1 4.4194 -1.7588 0.6950 31 1 3.2744 0.4239 3.3995 32 1 4.9490 0.3223 2.8049 33 1 3.5884 -2.2210 2.7106 34 1 3.9753 0.0018 5.7353 35 1 2.9731 -1.4518 5.9609 36 1 4.7140 -2.4246 7.4338 37 1 5.7168 -0.9712 7.2086 38 1 5.7934 -1.5485 10.8445 39 1 2.0092 -1.7279 1.1296 40 1 1.4244 -0.3396 2.1031 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358203122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:08 Heat of formation + Delta-G solvation = -123.112023 kcal Electronic energy + Delta-G solvation = -22087.226049 eV Core-core repulsion = 18642.916496 eV Total energy + Delta-G solvation = -3444.309553 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.01868 -36.70859 -36.44296 -35.50330 -34.41607 -33.93927 -31.77371 -31.21075 -28.98671 -26.86996 -25.64949 -24.32484 -21.80009 -21.55475 -20.62029 -19.00561 -17.84571 -17.28362 -16.62327 -16.20952 -15.83744 -15.58593 -15.35518 -14.88081 -14.61420 -14.55246 -14.22177 -13.66898 -13.50587 -13.27314 -12.77141 -12.53753 -12.38825 -12.03220 -11.95486 -11.84199 -11.78481 -11.65342 -11.56798 -11.46577 -11.11961 -11.00764 -10.92480 -10.47290 -10.43485 -10.14059 -9.87629 -9.59059 -9.10330 -8.76434 -8.54081 -6.16136 -4.22052 0.70858 3.02290 3.23125 3.29558 3.31874 3.59508 3.85345 4.17075 4.22342 4.26965 4.34347 4.48449 4.68179 4.80772 4.93783 5.06355 5.06741 5.19065 5.21496 5.27970 5.34499 5.44430 5.49412 5.53703 5.56520 5.59916 5.69211 5.79385 5.86706 6.42429 6.45492 6.64182 6.88776 7.25517 7.31529 7.46031 7.76415 8.13114 8.81233 9.42954 10.94882 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.020769 B = 0.003756 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.813089 B = 7453.048055 C = 8199.567806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.516 5.516 3 C 0.038 3.962 4 C -0.120 4.120 5 C 0.127 3.873 6 O -0.538 6.538 7 C 0.094 3.906 8 N -1.129 6.129 9 S 2.594 3.406 10 O -0.965 6.965 11 O -0.963 6.963 12 C -0.589 4.589 13 C 0.027 3.973 14 C -0.522 4.522 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.007 3.993 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.029 0.971 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.377 0.623 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.409 0.591 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.265 0.735 39 H 0.087 0.913 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 4.703 -18.807 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.240 5.240 3 C -0.090 4.090 4 C -0.158 4.158 5 C 0.084 3.916 6 O -0.343 6.343 7 C -0.033 4.033 8 N -0.887 5.887 9 S 2.691 3.309 10 O -0.956 6.956 11 O -0.953 6.953 12 C -0.722 4.722 13 C -0.012 4.012 14 C -0.561 4.561 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.728 3.272 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.121 4.121 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.225 0.775 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.242 0.758 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.722 4.560 -19.356 21.332 hybrid contribution -1.668 0.416 1.835 2.514 sum -9.390 4.975 -17.521 20.491 Atomic orbital electron populations 1.22551 0.87728 1.02350 1.00830 1.64697 1.07994 1.14899 1.36420 1.22868 0.95348 0.89833 1.00961 1.22438 0.98877 0.93812 1.00706 1.22145 0.88349 0.92964 0.88149 1.86561 1.67084 1.26094 1.54591 1.21968 1.03352 0.82877 0.95142 1.55842 1.72928 1.14274 1.45625 1.05580 0.75285 0.74982 0.75034 1.93561 1.86864 1.29181 1.85978 1.93551 1.38792 1.78680 1.84282 1.30437 1.13431 1.12506 1.15855 1.18970 0.96030 0.98728 0.87436 1.20988 1.11700 1.32265 0.91149 0.92085 1.25067 0.95084 0.95308 0.99010 1.69952 1.22598 1.39814 1.20388 0.86465 0.79521 0.79765 0.81488 1.20460 1.20969 1.19790 1.23997 0.95400 1.00671 0.92039 0.91231 0.91174 0.95247 0.93438 0.89969 0.89532 0.89124 0.77478 0.90716 0.88826 0.75761 0.86359 0.86108 0.94799 0.94764 0.92481 0.89427 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.40 60.06 0.56 0.67 16 2 N -0.52 -4.74 5.55 -238.55 -1.32 -6.07 16 3 C 0.04 0.31 6.70 -2.76 -0.02 0.29 16 4 C -0.12 -1.01 6.27 -25.38 -0.16 -1.17 16 5 C 0.13 1.21 1.04 -88.76 -0.09 1.12 16 6 O -0.54 -5.91 13.11 -35.23 -0.46 -6.37 16 7 C 0.09 0.97 5.19 -4.04 -0.02 0.95 16 8 N -1.13 -12.96 5.40 -10.61 -0.06 -13.01 16 9 S 2.59 43.53 5.46 -107.50 -0.59 42.94 16 10 O -0.97 -19.10 18.08 -57.54 -1.04 -20.14 16 11 O -0.96 -19.29 17.50 -57.54 -1.01 -20.30 16 12 C -0.59 -10.67 6.01 37.16 0.22 -10.45 16 13 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 14 C -0.52 -14.15 9.11 -34.44 -0.31 -14.47 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 18 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 22 C 0.01 0.06 5.20 -1.78 -0.01 0.05 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.03 0.21 8.01 -51.93 -0.42 -0.21 16 26 H 0.05 0.34 7.73 -51.93 -0.40 -0.07 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.60 7.85 -51.93 -0.41 0.19 16 29 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.38 3.29 8.25 45.56 0.38 3.67 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.07 7.69 -51.93 -0.40 0.67 16 33 H 0.41 3.78 7.50 -34.48 -0.26 3.52 16 34 H 0.12 1.89 8.14 -51.92 -0.42 1.47 16 35 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.09 0.72 7.89 -51.93 -0.41 0.31 16 40 H 0.06 0.50 7.87 -51.93 -0.41 0.09 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -35.63 340.66 -9.36 -44.99 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.67 Total: 3.32 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -0.06 Total: -20.94 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.64 Total: -44.52 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -2.51 Total: -46.80 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 43.53 SS G_CDS: -0.59 Total: 42.94 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.63 -9.36 -44.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358203122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.120 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds