Wall clock time and date at job start Tue Mar 31 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47897 * 111.00314 * 2 1 4 4 C 1.53991 * 107.05735 * 145.84362 * 3 2 1 5 5 C 1.54592 * 105.14297 * 358.77263 * 4 3 2 6 6 O 1.42904 * 110.72402 * 96.57611 * 5 4 3 7 7 C 1.53002 * 110.72815 * 219.68250 * 5 4 3 8 8 N 1.46494 * 109.47113 * 177.54764 * 7 5 4 9 9 S 1.65608 * 119.99583 * 165.00333 * 8 7 5 10 10 O 1.42102 * 104.27529 * 181.07038 * 9 8 7 11 11 O 1.42093 * 104.27575 * 308.92948 * 9 8 7 12 12 C 1.81397 * 104.44943 * 65.00070 * 9 8 7 13 13 C 1.52996 * 109.47172 * 179.97438 * 12 9 8 14 14 C 1.50702 * 109.47624 * 179.97438 * 13 12 9 15 15 H 1.08002 * 119.99509 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00407 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99811 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99892 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47305 * 90.00296 * 18 16 14 20 20 H 1.48506 * 109.47211 * 209.99880 * 18 16 14 21 21 H 1.48501 * 109.47320 * 329.99700 * 18 16 14 22 22 C 1.48740 * 111.04152 * 117.57609 * 2 1 3 23 23 H 1.08999 * 109.46811 * 59.87163 * 1 2 3 24 24 H 1.09002 * 109.47756 * 179.87653 * 1 2 3 25 25 H 1.09004 * 109.47541 * 299.87673 * 1 2 3 26 26 H 1.08996 * 109.92079 * 26.48862 * 3 2 1 27 27 H 1.09003 * 110.08081 * 265.28677 * 3 2 1 28 28 H 1.09006 * 110.31098 * 239.85438 * 4 3 2 29 29 H 1.09000 * 110.39544 * 117.73269 * 4 3 2 30 30 H 0.96696 * 113.99915 * 182.44738 * 6 5 4 31 31 H 1.09005 * 109.46728 * 57.54590 * 7 5 4 32 32 H 1.09001 * 109.46942 * 297.55531 * 7 5 4 33 33 H 0.96995 * 120.00292 * 345.27796 * 8 7 5 34 34 H 1.09002 * 109.47515 * 299.99988 * 12 9 8 35 35 H 1.08999 * 109.47173 * 59.99866 * 12 9 8 36 36 H 1.09002 * 109.47161 * 299.99950 * 13 12 9 37 37 H 1.08999 * 109.46961 * 60.00006 * 13 12 9 38 38 H 0.97004 * 119.99866 * 180.02562 * 17 16 14 39 39 H 1.08997 * 110.83391 * 81.95837 * 22 2 1 40 40 H 1.08998 * 110.58370 * 318.76901 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 3.2982 1.3658 0.8266 5 6 3.4491 -0.0930 1.3155 6 8 4.3206 -0.8277 0.4536 7 6 3.9588 -0.1309 2.7576 8 7 4.0358 -1.5214 3.2120 9 16 4.8923 -1.8999 4.5779 10 8 4.7671 -3.3110 4.6902 11 8 6.1600 -1.2906 4.3766 12 6 3.9941 -1.0724 5.9192 13 6 4.6956 -1.3503 7.2501 14 6 3.9499 -0.6623 8.3644 15 1 3.0638 -0.0850 8.1452 16 6 4.3987 -0.7699 9.6636 17 7 5.4779 -1.4725 9.9304 18 14 3.4738 0.0823 11.0448 19 1 2.4405 -0.8353 11.5885 20 1 4.4252 0.4512 12.1238 21 1 2.8206 1.3084 10.5203 22 6 2.0030 -0.6426 1.2305 23 1 -0.3633 0.5158 -0.8888 24 1 -0.3635 -1.0276 -0.0022 25 1 -0.3634 0.5119 0.8911 26 1 1.2759 2.0561 0.4571 27 1 2.2117 1.6999 -1.0203 28 1 3.2137 2.0428 1.6766 29 1 4.1479 1.6458 0.2038 30 1 4.4194 -1.7588 0.6950 31 1 3.2744 0.4239 3.3995 32 1 4.9490 0.3223 2.8049 33 1 3.5884 -2.2210 2.7106 34 1 3.9753 0.0018 5.7353 35 1 2.9731 -1.4518 5.9609 36 1 4.7140 -2.4246 7.4338 37 1 5.7168 -0.9712 7.2086 38 1 5.7934 -1.5485 10.8445 39 1 2.0092 -1.7279 1.1296 40 1 1.4244 -0.3396 2.1031 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358203122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:08 Heat of formation + Delta-G solvation = -155.110779 kcal Electronic energy + Delta-G solvation = -22088.613619 eV Core-core repulsion = 18642.916496 eV Total energy + Delta-G solvation = -3445.697123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.71911 -38.16463 -37.25616 -36.99357 -35.88625 -35.36169 -33.11776 -32.45077 -29.69362 -27.59296 -27.55338 -25.04278 -23.60833 -22.26421 -21.35733 -20.28054 -19.14690 -18.64658 -17.95081 -17.25142 -17.06212 -16.61739 -16.47409 -16.43056 -15.78162 -15.49719 -15.11693 -14.85645 -14.47573 -14.31500 -14.05732 -13.71352 -13.57301 -13.22474 -13.19585 -13.10544 -13.00267 -12.92629 -12.77349 -12.53233 -12.46247 -12.23482 -12.12953 -12.10003 -11.74099 -11.69339 -11.20089 -10.90955 -10.64241 -10.42043 -9.36850 -8.25574 -6.39484 -0.68912 1.41650 1.43142 1.54132 1.81898 2.38360 2.80219 2.97398 3.08281 3.18608 3.28534 3.51895 3.58485 3.83567 3.98436 4.14128 4.21533 4.24437 4.43996 4.49638 4.52789 4.64544 4.70876 4.75593 4.78254 4.82640 4.88955 5.02364 5.09807 5.19292 5.28651 5.29665 5.69089 5.84965 6.01963 6.06088 6.06944 6.74656 6.76713 7.30917 8.86688 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.020769 B = 0.003756 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.813089 B = 7453.048055 C = 8199.567806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.536 5.536 3 C 0.038 3.962 4 C -0.122 4.122 5 C 0.127 3.873 6 O -0.556 6.556 7 C 0.087 3.913 8 N -1.107 6.107 9 S 2.624 3.376 10 O -0.997 6.997 11 O -0.997 6.997 12 C -0.587 4.587 13 C 0.018 3.982 14 C -0.538 4.538 15 H 0.077 0.923 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.973 3.027 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.256 1.256 22 C 0.007 3.993 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.384 0.616 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.423 0.577 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.006 0.994 37 H 0.007 0.993 38 H 0.267 0.733 39 H 0.091 0.909 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.168 6.101 -19.324 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.260 5.260 3 C -0.090 4.090 4 C -0.161 4.161 5 C 0.084 3.916 6 O -0.363 6.363 7 C -0.040 4.040 8 N -0.869 5.869 9 S 2.721 3.279 10 O -0.988 6.988 11 O -0.987 6.987 12 C -0.719 4.719 13 C -0.021 4.021 14 C -0.577 4.577 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.574 5.574 18 Si 0.797 3.203 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.180 1.180 22 C -0.121 4.121 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.233 0.767 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.260 0.740 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.979 5.952 -19.883 23.029 hybrid contribution -0.973 -0.020 1.884 2.121 sum -10.952 5.931 -17.999 21.888 Atomic orbital electron populations 1.22577 0.86792 1.02670 1.01392 1.64685 1.09032 1.15504 1.36752 1.22884 0.95421 0.89737 1.00960 1.22515 0.98813 0.93396 1.01339 1.22219 0.88579 0.93621 0.87184 1.86548 1.67621 1.26841 1.55283 1.22229 1.03670 0.81731 0.96376 1.55240 1.72388 1.15675 1.43636 1.04370 0.74645 0.73616 0.75294 1.93512 1.87257 1.31239 1.86767 1.93509 1.41122 1.79104 1.84963 1.30324 1.14055 1.14720 1.12840 1.18835 0.95451 0.96730 0.91088 1.21527 1.12140 1.32063 0.91962 0.90457 1.26113 0.95950 0.96044 1.02177 1.70103 1.24601 1.41687 1.21046 0.85320 0.78090 0.79085 0.77798 1.19697 1.21017 1.18029 1.24011 0.94744 1.00912 0.92417 0.90666 0.91019 0.94673 0.92123 0.90227 0.87761 0.89894 0.76694 0.88063 0.89899 0.74009 0.83764 0.83671 0.97570 0.97498 0.92440 0.89100 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.40 127.69 1.20 1.38 16 2 N -0.54 -8.65 5.55 -908.63 -5.04 -13.69 16 3 C 0.04 0.53 6.70 86.45 0.58 1.11 16 4 C -0.12 -1.79 6.27 31.47 0.20 -1.59 16 5 C 0.13 2.15 1.04 -9.59 -0.01 2.14 16 6 O -0.56 -11.47 13.11 -148.98 -1.95 -13.42 16 7 C 0.09 1.57 5.19 86.38 0.45 2.02 16 8 N -1.11 -23.17 5.40 -187.49 -1.01 -24.18 16 9 S 2.62 86.33 5.46 -56.49 -0.31 86.02 16 10 O -1.00 -39.36 18.08 -127.65 -2.31 -41.67 16 11 O -1.00 -40.01 17.50 -127.65 -2.23 -42.24 16 12 C -0.59 -20.47 6.01 71.98 0.43 -20.04 16 13 C 0.02 0.90 4.98 29.85 0.15 1.05 16 14 C -0.54 -28.99 9.11 25.60 0.23 -28.76 16 15 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 16 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 17 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 18 Si 0.97 42.41 29.54 68.60 2.03 44.44 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 22 C 0.01 0.11 5.20 86.61 0.45 0.56 16 23 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.03 0.40 8.01 -2.38 -0.02 0.38 16 26 H 0.06 0.69 7.73 -2.39 -0.02 0.67 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.10 1.13 7.85 -2.38 -0.02 1.11 16 29 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 30 H 0.38 6.23 8.25 -74.06 -0.61 5.62 16 31 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.08 1.74 7.69 -2.39 -0.02 1.72 16 33 H 0.42 6.88 7.50 -96.75 -0.73 6.15 16 34 H 0.14 4.23 8.14 -2.39 -0.02 4.21 16 35 H 0.15 4.33 8.14 -2.39 -0.02 4.31 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.09 1.27 7.89 -2.39 -0.02 1.25 16 40 H 0.07 0.91 7.87 -2.39 -0.02 0.89 16 Total: -1.00 -77.51 340.66 -6.70 -84.20 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -0.30 Total: 18.43 kcal Atomic # 6 Polarization: -46.07 SS G_CDS: 4.14 Total: -41.92 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -5.77 Total: -93.84 kcal Atomic # 8 Polarization: -90.83 SS G_CDS: -6.49 Total: -97.33 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 86.33 SS G_CDS: -0.31 Total: 86.02 kcal Total: -77.51 -6.70 -84.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358203122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.908 kcal (2) G-P(sol) polarization free energy of solvation -77.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds